Item | Value |
---|---|
gene id | LOC110487340 |
gene name | LOC106595892 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048581.1 |
NCBI id | CM023235.2 |
chromosome length | 95212422 |
location | 3890766 ~ 3955806 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
PREDICTED: E3 ubiquitin-protein ligase RBBP6-like, partial |
id | name | namespace |
---|---|---|
GO:0005634 | nucleus | cellular_component |
GO:0008270 | zinc ion binding | molecular_function |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036948661.1 | False | 7813 | mRNA | 0.56 | 17 | 3915378 | 3955805 |
XM_036948662.1 | False | 7811 | mRNA | 0.56 | 17 | 3915378 | 3955806 |
XM_036948663.1 | False | 1739 | mRNA | 0.46 | 7 | 3940465 | 3955805 |
XM_036948664.1 | False | 1517 | mRNA | 0.46 | 4 | 3944929 | 3955800 |
XM_036948665.1 | False | 2347 | mRNA | 0.43 | 3 | 3949005 | 3955786 |
XM_036948666.1 | False | 2302 | mRNA | 0.43 | 4 | 3949005 | 3955793 |
TU1618439 | False | 1273 | lncRNA | 0.48 | 2 | 3890766 | 3916975 |
TU1618442 | False | 1423 | TUCP | 0.61 | 3 | 3922582 | 3926352 |
TU1618443 | True | 821 | TUCP | 0.63 | 4 | 3926600 | 3932591 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110487179 | LOC106594366 | coding | downstream | 249871 | 3648092 ~ 3665507 (-) |
LOC110487181 | NA | coding | downstream | 267404 | 3641738 ~ 3647974 (-) |
trnai-uau-5 | NA | coding | downstream | 274837 | 3640448 ~ 3640541 (-) |
LOC118940206 | NA | coding | downstream | 282421 | 3620424 ~ 3632957 (-) |
LOC110487183 | NA | coding | downstream | 312419 | 3599591 ~ 3602959 (-) |
LOC118940062 | LOC106594488 | coding | upstream | 5220 | 3961026 ~ 3967368 (-) |
LOC110510730 | prkcb | coding | upstream | 41486 | 3997292 ~ 4107497 (-) |
LOC110534555 | LOC106591133 | coding | upstream | 515895 | 4471701 ~ 4481285 (-) |
LOC118940221 | LOC106595417 | coding | upstream | 577382 | 4533188 ~ 4538525 (-) |
LOC118940225 | NA | coding | upstream | 719466 | 4675272 ~ 4676129 (-) |
G1415450 | LOC106594479 | non-coding | downstream | 1079 | 3776397 ~ 3914299 (-) |
G1415502 | NA | non-coding | downstream | 21205 | 3893155 ~ 3894173 (-) |
G1415501 | NA | non-coding | downstream | 22556 | 3891915 ~ 3892822 (-) |
G1415460 | NA | non-coding | downstream | 52216 | 3849922 ~ 3863162 (-) |
G1415461 | NA | non-coding | downstream | 108909 | 3794485 ~ 3806469 (-) |
G1415540 | NA | non-coding | upstream | 16003 | 3971809 ~ 3972075 (-) |
G1415517 | NA | non-coding | upstream | 26881 | 3982687 ~ 3984725 (-) |
G1415520 | NA | non-coding | upstream | 29079 | 3984885 ~ 3985580 (-) |
G1415514 | NA | non-coding | upstream | 38276 | 3994082 ~ 3995078 (-) |
G1415547 | NA | non-coding | upstream | 42011 | 3997817 ~ 3998227 (-) |
LOC110500804 | NA | other | downstream | 524042 | 3388852 ~ 3391857 (-) |
LOC110519887 | NA | other | downstream | 802284 | 3107213 ~ 3113094 (-) |
LOC118936352 | LOC106593206 | other | downstream | 1105028 | 2801377 ~ 2810350 (-) |
LOC110516478 | LOC106564555 | other | downstream | 1123789 | 2782336 ~ 2792008 (-) |
G1415689 | NA | other | upstream | 604406 | 4560212 ~ 4565337 (-) |
LOC118940216 | LOC106593434 | other | upstream | 779609 | 4734750 ~ 4764159 (-) |
LOC110518928 | LOC106593877 | other | upstream | 1039436 | 4995034 ~ 5004514 (-) |
G1415835 | NA | other | upstream | 1041865 | 4997671 ~ 4998596 (-) |
G1415381 | LOC106594474 | non-coding | downstream | 86970 | 3609001 ~ 3803796 (-) |
G1415440 | NA | non-coding | downstream | 129835 | 3758399 ~ 3760931 (-) |
G1415287 | NA | non-coding | downstream | 248150 | 3620541 ~ 3642616 (-) |
G1415507 | NA | non-coding | upstream | 2339 | 3919314 ~ 3919603 (-) |
G1415508 | NA | non-coding | upstream | 3075 | 3920050 ~ 3920268 (-) |
G1415512 | NA | non-coding | upstream | 10298 | 3927273 ~ 3931483 (-) |
G1415503 | NA | non-coding | upstream | 17112 | 3934087 ~ 3934709 (-) |
G1415533 | NA | non-coding | upstream | 22892 | 3939867 ~ 3940076 (-) |
LOC110487340 | LOC106595892 | other | upstream | 5607 | 3890766 ~ 3955806 (-) |
G1415535 | NA | non-coding | upstream | 20019 | 3952610 ~ 3953759 (-) |