LOC118940211


Basic Information

Item Value
gene id LOC118940211
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 4115570 ~ 4119613 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948680.1
TCCGACATTGCCGCTTGTGTAACTGTCATTGGATGCGATTTTGAATGATTAAGCCTGACTGGGTACATACACTGTCAATCAAATGAAACCGGAAGAAAGAAAGGTTCCATATGAAAACAATGTGTACGGATAGCGGTGTGTCCTTACCGAGCCGTTCCGCCATGCCAACTTCCCCGGTAAAGACGCGGATCCCGCTCACGAGCTTCGGTCATCTGATCACCGAGGTGAAGAGACAGTTGTTTGGTATGGAGGCTCCAGCCACTGTTAACCTGACTGGATGGAGGAGACATTTCAACAGCTACACACTACAGGGGAGACGCAActttgtCCTGGCTACCTATGGTGTCCTAGCGTTGTCGGCAGCAGCCTATATGATACGCCATCGGAGTAAAGAGGACCCAAGAGTAGCCAGCCCCACTGCCTGACTGAAAAGACCCTCTCTCAATATCCCAACGCTTTATTGGCCTGATATTCACATTGATTTCCAATAA
>XM_036948681.1
CATACACTGTCAATCAAATGAAACCGGAAGAAAGAAAGGTTCCATATGAAAACAATGTGTACGGATAGCGCCATGCCAACTTCCCCGGTAAAGACGCGGATCCCGCTCACGAGCTTCGGTCATCTGATCACCGAGGTGAAGAGACAGTTGTTTGGTATGGAGGCTCCAGCCACTGTTAACCTGACTGGATGGAGGAGACATTTCAACAGCTACACACTACAGGGGAGACGCAActttgtCCTGGCTACCTATGGTGTCCTAGCGTTGTCGGCAGCAGCCTATATGATACGCCATCGGAGTAAAGAGGACCCAAGAGTAGCCAGCCCCACTGCCTGACTGAAAAGACCCTCTCTCAATATCCCAACGCTTTATTGGCCTGATATTCACATTGATTTCCAATAA
>TU1617146
AAGAAAGAAAGGTTCCATATGAAAACAATGTGTACGGATAGCGGTGTGTCCTTACCGAGCCGTTCCGCCATGCCAACTTCCCCGGTAAAGACGCGGATCCCGCTCACGAGCTTCGGTCATCTGATCACCGAGGTGAAGAGACAGTTGTTTGGTATGGAGGCTCCAGCCACTGTTAACCTGACTGGATGGAGGAGACATTTCAACAGCTACACACTACAGGGGAGACGCAActttgtCCTGGCTACCTATGGTGTCCTAGCGTTGTCGGCAGCAGCCTATATGATACGCCATCGGAGTAAAGAGGACCCAAGAGTAGCCAGCCCCACTGCCTGACTGAAAAGACCCTCTCTCAATATCC

Function

NR:

description
PREDICTED: up-regulated during skeletal muscle growth protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948680.1 False 491 mRNA 0.49 4 4115570 4119613
XM_036948681.1 False 402 mRNA 0.49 4 4115635 4119613
TU1617146 True 358 TUCP 0.52 4 4115662 4119572

Neighbor

gene id symbol gene type direction distance location
LOC118940212 NA coding upstream 118456 3994040 ~ 3997114 (+)
LOC118940213 NA coding upstream 155222 3959983 ~ 3960348 (+)
LOC118940214 NA coding upstream 156361 3958864 ~ 3959209 (+)
LOC110487309 LOC106594479 coding upstream 201276 3893460 ~ 3914294 (+)
LOC110487310 LOC106594479 coding upstream 227480 3837784 ~ 3888090 (+)
LOC110495002 LOC106593218 coding downstream 60179 4179792 ~ 4185824 (+)
LOC110493327 LOC106563993 coding downstream 74962 4194575 ~ 4200219 (+)
LOC118940063 LOC106593486 coding downstream 88107 4207720 ~ 4219834 (+)
LOC118940215 LOC106563992 coding downstream 118439 4238052 ~ 4414577 (+)
LOC118940224 NA coding downstream 358818 4478431 ~ 4478806 (+)
G1414635 NA non-coding upstream 766 4114590 ~ 4114804 (+)
G1414623 NA non-coding upstream 31069 4084012 ~ 4084501 (+)
G1414622 NA non-coding upstream 31614 4082810 ~ 4083956 (+)
G1414620 NA non-coding upstream 36791 4077644 ~ 4078779 (+)
G1414614 NA non-coding upstream 49320 4065205 ~ 4066250 (+)
G1414637 NA non-coding downstream 53949 4173562 ~ 4173836 (+)
G1414639 NA non-coding downstream 57420 4177033 ~ 4294945 (+)
G1414609 NA non-coding downstream 76364 4195977 ~ 4196842 (+)
G1414648 NA non-coding downstream 103727 4223340 ~ 4224742 (+)
G1414650 NA non-coding downstream 114746 4234359 ~ 4234947 (+)
G1414190 NA other upstream 222350 3890763 ~ 3893220 (+)
LOC118940205 LOC106585892 other upstream 439549 3670220 ~ 3678312 (+)
G1414430 NA other upstream 522655 3587244 ~ 3592915 (+)
LOC110506850 LOC106593733 other upstream 589584 3519620 ~ 3526117 (+)
LOC118940198 LOC106593831 other upstream 757876 3355122 ~ 3359173 (+)
LOC118940222 NA other downstream 367013 4486626 ~ 4489118 (+)
LOC110533195 LOC106591134 other downstream 372553 4489324 ~ 4500670 (+)
radil LOC106592570 other downstream 512073 4631686 ~ 4726137 (+)
G1414786 NA other downstream 532160 4651773 ~ 4652894 (+)
G1414801 NA other downstream 610318 4729387 ~ 4734664 (+)

Expression


Co-expression Network