LOC110533195 (LOC106591134)


Basic Information

Item Value
gene id LOC110533195
gene name LOC106591134
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 4489324 ~ 4500670 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948695.1
CGCGCGCTGGACTTTCGGCCAAgaaaggtcgagggttcgagtcctgcttccctgcctgtttcattacactggtgtcagaagtgggatcggACCCTTGCAGCCACGACAGTGCGCGTGCTTGGCCGGTGAGAGTGTGCGCGCGCGCGTTCCTGTAAAAAGACGTAGTGTTCGCAAGCTAGCGCGAGGACGCGCTCTTTGAAAATGGAGGGATGAGTGTAACGAACCCTGGGGTTTAATTAATaagggctagaaggtcgagggttcgagacctgcttcATTACAATACGAACGGATGTCTAAGCCCCAGAATGGTGAGTCAGGCAGCCCAGCAGCAGATGATCCAGAGGTGATGTTCCAGGTACCTGGTCCAACCGTCTCCTTCTCCAGACTACACTACTCTGTCATGGAGAGCAATGGACTCTGCCACAAGACAGGACCTgagaaacacatcctcagagacGTCAGCGGCATCATGAGACCAGGGATGAACGCCATCATGGGGCCAACAGGAAGTGGAAAAACATCtcTCCTGGATGTGATAGCAGGTCGTAAGGACCCAGCAGGGTTGAAGTTTGGTCAGGTTCTGATCGATGGGAAGATGGTGGACTCTGACCTCCGACTCATATCTGCCTACGTGGTGCagGATGATATATTGATGGGAACCCTGTCAGTGAGAGAGAACTTGTTGTTCAGTGTGAACCTGAGACTAGACCCTAGACATTATTCTGCAGCTGACAAACAGCAGAGAGTGGACAGCATCATAGATGACCTGGGTCTACAGGACTGTGCCCACACCAAGGTCAGCCGTACACACCTGCAGAGGTCTGGTCTGGTTAGCCTGTTGAACTAGAGGCTTTAGAGGCACACACATTCTAGAGGCACac
>XM_036948694.1
tgctactacatttattaatgtctacacctctactgtggggttctgttactacatttattaatgtctacacctctactgtgtggCTCTGTTACTACTAAATACACTAGATGACCGATAGGGGGTGCTGTAGtgaagccaccgtgcctccatcttggtaTTCCTCCTTCACTGGAAGCTAATAGAAATtaatttattaatgtctacattcgcTTTTGACACGTTTATTCTGTAGATACCTTAATggatacttttaaattatattatgataaacattaaaataacaaatatacatatatatagtaTTTAAGCATTTTCCTTTTAAGTATCTGAGTATATAATTCTGTCATTGAAAAATGTAATTCCagtcattcctatggaggactgctcctaccgGGGAGttccaatatggccgaccggtcgCTTCAAGCCACTCAGTTGCAAATACATAGCGTCAGCAATCTAGAGTTTATATATACATCATTGGTGAAGACAGGTGTTTGTTGCACGTGCTCTCCTGTTATCAATGCCCCTGCGCTGTCAAGGCCAAGGTTCAAAGTTCAACATCCTGCCCTCTGGTAGGGCGTGGCCACACCCATGCCCCTGTGTGATTGGTTGACAGGGGGCGTAAAGAGGCTTGGGCAGGGCAATCTGGGATACGTTACCTTGAAGTTAGAACATAGGTTAGATAGCTACTGCAGCagacaactcctctctctctgtctgtctctttatctaTCTAACATCATTTCTTCTCcgttcccttctttctctctctctctgtctgtctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctctctctctctctctctctctctctctccctgtctctctctctgtctctctctctctctctctgtctctctctctctctctacctcctctctctctatctccctgtctctctgtctctctccttccctctctctcggtGAGGAGGATGTCTAAGCCCCAGAATGGTGAGTCAGGCAGCCCAGCAGCAGATGATCCAGAGGTGATGTTCCAGGTACCTGGTCCAACCGTCTCCTTCTCCAGACTACACTACTCTGTCATGGAGAGCAATGGACTCTGCCACAAGACAGGACCTgagaaacacatcctcagagacGTCAGCGGCATCATGAGACCAGGGATGAACGCCATCATGGGGCCAACAGGAAGTGGAAAAACATCtcTCCTGGATGTGATAGCAGGTCGTAAGGACCCAGCAGGGTTGAAGTTTGGTCAGGTTCTGATCGATGGGAAGATGGTGGACTCTGACCTCCGACTCATATCTGCCTACGTGGTGCagGATGATATATTGATGGGAACCCTGTCAGTGAGAGAGAACTTGTTGTTCAGTGTGAACCTGAGACTAGACCCTAGACATTATTCTGCAGCTGACAAACAGCAGAGAGTGGACAGCATCATAGATGACCTGGGTCTACAGGACTGTGCCCACACCAAGGTCAGCCGTACACACCTGCAGAGGTCTGGTCTGGTTAGCCTGTTGAACTAGAGGCTTTAGAGGCACACACATTCTAGAGGCACacacatt
>TU1617231
GTTAGAACATAGGTTAGATAGCTACTGCAGCagacaactcctctctctctgtctgtctctttatctaTCTAACATCATTTCTTCTCcgttcccttctttctctctctctctgtctgtctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctctctctctctctctctctctctctctccctgtctctctctctgtctctctctctctctctctgtctctctctctctctctacctcctctctctctatctccctgtctctctgtctctctccttccctctctctcggtGAGGAGGATGTCTAAGCCCCAGAATGGTGAGTCAGGCAGCCCAGCAGCAGATGATCCAGAGGTGATGTTCCAGGTACCTGGTCCAACCGTCTCCTTCTCCAGACTACACTACTCTGTCATGGAGAGCAATGGACTCTGCCACAAGACAGGACCTgagaaacacatcctcagagacGTCAGCGGCATCATGAGACCAGGGATGAACGCCATCATGGGGCCAACAGGAAGTGGAAAAACATCtcTCCTGGATGTGATAGCAGGTCGTAAGGACCCAGCAGGGTTGAAGTTTGGTCAGGTTCTGATCGATGGGAAGATGGTGGACTCTGACCTCCGACTCATATCTGCCTACGTGGTGCagGATGATATATTGATGGGAACCCTGTCAGTGAGAGAGAACTTGTTGTTCAGTGTGAACCTGAGACTAGACCCTAGACATTATTCTGCAGCTGACAAACAGCAGAGAGTGGACAGCATCATAGATGACCTGGGTCTACAGGACTGTGCCCAC

Function

NR:

description
PREDICTED: ATP-binding cassette sub-family G member 2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948695.1 False 884 mRNA 0.53 5 4489324 4500665
XM_036948694.1 False 1572 mRNA 0.46 4 4491498 4500670
TU1617231 True 808 TUCP 0.50 4 4492166 4500574

Neighbor

gene id symbol gene type direction distance location
LOC118940222 NA coding upstream 206 4486626 ~ 4489118 (+)
LOC118940224 NA coding upstream 10518 4478431 ~ 4478806 (+)
LOC118940215 LOC106563992 coding upstream 74747 4238052 ~ 4414577 (+)
LOC118940063 LOC106593486 coding upstream 269490 4207720 ~ 4219834 (+)
LOC110493327 LOC106563993 coding upstream 289105 4194575 ~ 4200219 (+)
LOC110517082 NA coding downstream 92 4500762 ~ 4520671 (+)
LOC118940223 NA coding downstream 21654 4522324 ~ 4523128 (+)
LOC110514597 arpc1a coding downstream 47823 4548493 ~ 4565339 (+)
LOC118940219 arc1b coding downstream 65952 4566622 ~ 4582980 (+)
LOC118940220 LOC106591432 coding downstream 85202 4585872 ~ 4623975 (+)
G1414660 LOC106591133 non-coding upstream 8995 4476241 ~ 4480329 (+)
G1414749 NA non-coding upstream 27660 4458337 ~ 4461664 (+)
G1414747 NA non-coding upstream 41586 4447200 ~ 4447738 (+)
G1414738 NA non-coding upstream 62847 4425918 ~ 4426477 (+)
G1414730 NA non-coding upstream 93830 4395009 ~ 4395494 (+)
G1414759 NA non-coding downstream 25410 4526080 ~ 4526314 (+)
G1414760 NA non-coding downstream 26298 4526968 ~ 4527273 (+)
G1414761 NA non-coding downstream 29360 4530030 ~ 4534088 (+)
LOC118940211 NA other upstream 369752 4115570 ~ 4119613 (+)
G1414190 NA other upstream 596104 3890763 ~ 3893220 (+)
LOC118940205 LOC106585892 other upstream 813303 3670220 ~ 3678312 (+)
G1414430 NA other upstream 896409 3587244 ~ 3592915 (+)
radil LOC106592570 other downstream 131016 4631686 ~ 4726137 (+)
G1414786 NA other downstream 151103 4651773 ~ 4652894 (+)
G1414801 NA other downstream 229261 4729387 ~ 4734664 (+)
G1414826 NA other downstream 298853 4799523 ~ 4853325 (+)
LOC110514795 LOC106591899 other downstream 444766 4945436 ~ 4974798 (+)

Expression


Co-expression Network