XLOC_033146 (rhoca)


Basic Information

Item Value
gene id XLOC_033146
gene name rhoca
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 48382697 ~ 48418021 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064409
GCTGATCCTCCGCCTCCTCCAGTGCACACCGAGCGGCGAGTCAGATTCCCATTACTGCGGGCGGGTCTCCAGCGATAACAACGAGAAATTCATACACATTCAGCCCAAAACTCGGACGCGACAGGCAGTTAGGCACCTAAGAGCAAACAGGAGCTATGGCGGCTATCAGGAAAAAGCTGGTGATCGTGGGAGATGGAGCATGTGGGAAGACCTGTCTACTCATAGTGTTCAGCAAAGACCAGTTTCCAGAAGTCTACGTGCCTACTGTGTTCGAGAACTACATTGCTGACATTGAAGTCGACAGCAAACAGGTGGAGCTGGCATTGTGGGACACAGCAGGACAGGAGGACTATGACCGTCTCAGACCTCTGTCTTACCCAGACACAGATGTCATCCTCATGTGCTTCTCCATAGACAGTCCCGACAGTTTAgAGAATATCCCAGAAAAGTGGACGCCGGAGGTAAAGCACTTCTGCCCCAACGTTCCCATAATCCTGGTGGGCAATAAGAGAGATCTGCGTACTGATGAGAACACACGGAGGGAGCTGACTAAGatgaagcagGAGCCAGTTAAAATAGAAGAGGGCAGGGACATGGCTAACCGCATTAGCGCCTTCGGCTACCTGGAATGCTCAGCTAAGACTAAGGATGGCGTGAGGGAAGTTTTTGAAATGGCCACCAGAGCGGCGCTGCAGGTTCgcaagaggaagaagaggagcgGGTGCTCACTGTTGTGAGAGAAGCTTCCGGTATTTTCCAGAATGATCTCTCAGATGACCAGGAAATACcaaactctacacacacacacacacacacacacacacacacaaaaaatatgtcTTGACCAAACAACATAAATACACTGGACTGTATGTCACATTTCATGCAAACCCACAGGTGGAAACGgaggaaagtaaataaaatatgcattaaacAGGATGGCAGGATATACACGCACATATAGGTATACGTTTTCCTGTTTTTTAGAATAACTTGTTTTCCAGTTTGTACTGTATGGATGGCATCAGTCATAATGGTAtgtatttttgcacatttatCAACTGACCATTATAACTGAATCTGGTAAGaggacatttttacattttaatgtaatcaaaaCTAATATCACAAAATGGAAATCTCTTAATAGCACAGAATAATTTGGTAATAAAAACAGTGCCTTCATGATCATTCCCTCCACAATTTGAATGTATAAAAAAGTGCAAGTTTTGAGCTTCTCCTTGACTTTAAAACTCTTTTCTAGTAGTGAATAACTCTATGAGccaattaaatgtgtttaaaggTGCAAGCTATCCTGTAATAAAGAGTATTTCTAGCTTTTGCATTACCCTAAGTAAATACCAATTACATGTCATCACATTTTGAAAGCTTGGTGAGGTCTAAAAAACCATCTGCTAACCGGTGGTGTgacatttttcttttatattttctgtttgtcGTCCACACGGGCGTAAACATACATGTGTGCATGTGGATTGAGCTGTGTAGATCCTAAACTGGTTGAACCTGCCTGAATACTCGTCACTGAGCTCATGCTGTCACATAATCTGACTTATTGTTCTCACATTAGccgtcttaaagggacagttcaccaaaaatgagaatgtgctgtttatttatttacttcaggccatccaagatgaaGGTGCTTTTTTTCTTGAGTGGAACATCAAAGGTTTTTTGCTGAAAAtggctgccaaaaaaaaaaaaaaaattacctttggATATTGATGATACCATTAAGGTTGGTTtataatgctttttatttaatcCTAAAAACTCCTCAATGTTCTTCTGAATAAAATGTCATCATCTTTTCAAATGGCCAGAGGGAAGTGGTAACCGTTCACTAAATCCTAGAACAGGGATTCTCAAACTCTGtcctggtgtcctgcaaagttttgctccaaccccaatcagacatcGGGGCTAGTTAATCAAGCTCATTATCCCTGATCACACTGCACTCTTCACCCCATAGACTTACGCATGCAAATGCGGCAGATCgtgtgacaagtttcgcagttcactgcatttgtaagttcaagtttggtgaactctgatctgTGAAATTGCATTATATGaatgcgtgagaccaatcgaagatcaaaacatgacctctttgggcaaaaatgtaaaatatggaccagtcACTTGCTTTGTAAATGTCTGATCATCTTGCTTAATCCAGTTTCTTTTCGCAGCTATACAACAGAATTtagcacacacaaactctaatgTGTAGCATtaataggctttctagaaacatccttgcaggggtgttgaggcaagttggagctaaaatctgcaggacactcgTCCTCCTTGTCCAAGTTTGATAGCCCCTTACCTAGAACGGCAAAATTCCCTGTGAACATGCAAATAACAACAGCATTACTGAACAATGAACCCACAGTACACCTAAACAGTGCATGATGaccttttaaacataataatagtgAACAGTGTTATATTAAAAACAAGTCTTTTCTTGTTGTTCCAAccttttgttttgttagttttaagtgtaaagaaataaaataaataagacgctatattaaattatatactattattattattaatattattattactttagttTTTCTGCTGTCATTCCCCATATTTAGATGTTACATTTAAACATGTTCAAGAGTTGTTACTAATGGGTTAATGTGCTTATCCaagtaaagtcaaataaaatattttatttatacaccCTCA

Function

symbol description
rhoca Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; skeletal muscle satellite cell migration; and wound healing, spreading of cells. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and neuron projection. Is expressed in hindbrain; notochord; and rhombomere. Orthologous to human RHOC (ras homolog family member C).

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:1902766 skeletal muscle satellite cell migration biological_process
GO:0030865 cortical cytoskeleton organization biological_process
GO:0044319 wound healing, spreading of cells biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005938 cell cortex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1337 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; skeletal muscle satellite cell migration; and wound healing, spreading of cells. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and neuron projection. Is expressed in hindbrain; notochord; and rhombomere. Orthologous to human RHOC (ras homolog family member C).

Ensembl:

ensembl_id ENSDARG00000021309

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064409 True 2745 mRNA 0.40 5 48382697 48418021

Neighbor

gene id symbol gene type direction distance location
XLOC_033145 CU469362.1 coding downstream 1474 48380245 ~ 48381223 (-)
XLOC_033144 capza1a coding downstream 34973 48322250 ~ 48347724 (-)
XLOC_033143 st7l coding downstream 65135 48290125 ~ 48317562 (-)
XLOC_033142 slc2a1b coding downstream 288355 48068695 ~ 48094342 (-)
XLOC_033141 NA coding downstream 321038 47979305 ~ 48061659 (-)
XLOC_033147 ppm1j coding upstream 7345 48425366 ~ 48473694 (-)
XLOC_033148 CU137649.1 coding upstream 194013 48612034 ~ 48612150 (-)
XLOC_033149 NA coding upstream 496847 48914868 ~ 48949515 (-)
XLOC_033150 si:ch211-105j21.9 coding upstream 643056 49061077 ~ 49063085 (-)
XLOC_033151 slc5a8l coding upstream 645268 49063289 ~ 49078702 (-)
XLOC_033138 AL929512.1 non-coding downstream 779982 47602599 ~ 47602715 (-)
XLOC_033135 CABZ01055240.1 non-coding downstream 1226281 47156302 ~ 47156416 (-)
XLOC_033123 CU041346.1 non-coding downstream 2072686 46294361 ~ 46310011 (-)
XLOC_033152 NA non-coding upstream 682858 49100879 ~ 49104192 (-)
XLOC_033155 BX569793.1 non-coding upstream 892887 49310908 ~ 49322532 (-)
XLOC_033163 NA non-coding upstream 1342334 49760355 ~ 49771639 (-)

Expression


Co-expression Network