XLOC_033149


Basic Information

Item Value
gene id XLOC_033149
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 48914868 ~ 48949515 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065224
CACATGGTGCTCAGAGGATCAGCGATGAAACTCCCTGAACAAATGCGCACGAGGGGTGACCGCGTTCGGGTCGTGGgagcagcagtctcaggagagaaccttaaacttccctctccccagacacttcctccagttcCTCCGGGGGAACCAGAGGCATTCACAGGCAAGCTGAGATACATAGtacctccagcgtgtcctgggacTTCCTTGAGGCCTCCTTCTGGACACCGCTAAGTAAGTGAAGTCAGCCCAAACTGGAAGAGCAGCTGTGGAGAAGAGTCATGCGCTGAGAGGAGAAGCCTGGAATACTTATTATCTGCAAGAAAAtggaaggaaaaaaaagagcagTTTTACAAGGTAATCTGGttttgaaagaaaagaaaagcttcCATGTtcatttataaaccaagcaacaCTATTTTAATGATCTGTAGTCAGCCCCAAAGACACAAACTGCTCATCCCATTTACCTAAACCCATATATTTCTTTAACACATGCTTTGTATGCTTAACAGGAAATCAATTGTtccatttaaaacatttgatcACTGGATTTTTAAGAGTTCTGGAATTACATTACACACCCTTCTAAGTAAACAATAAAGGATTTTCCCCAAAGCAATGCTTTTATGTCTGGAACACAATAGATTTAAAGATAAATTTGTGCTTAATAGAGATATTAAGATTGTATTTTAAGGTTGAAattaataatgtgttttaatgCAGGTTGTGATTAAAATTTTTGCATAATTTAGCAAAAACAATTAGCAGAATAATGCACATCAATCACTTTTCTGATGCACATTATTGTGTTTTCACTGCAGTTTGTGCATTGTTTTACATTGGTTGTTATAGTTATTACACTAATACCAAAGCCATAAACCCAAACCCATTTGTTGCTTGGCAAAAACTAAGCCTAATTTGTCTTCCACATCATCACACATTTGCATAATAAGCTGATATTTAATACTGAAGCAGTTTTAACTTGTGCATAACTTATGCAGAATTTaatgtatgcaaaaaaaaaaaaaagcatgaagaCAATCAATCACTTTGCTGATCGCACATTAGTGCACATTTTCTGTTTGCACTGCAATTTATACACGTTGTTTTACATGGTTAAATATGGTAAACAAAAACTAATAccaaagttataataataataatgaaaccaTAATTTTACAATTCAATCACTATATAAGACTAAAACTAttacaaaatgacaaaaacacaacaaaccgacaaagaaaattaaaactgaacatgtaaatgtaaaaataaaaacatatgtaaACGATTCATAAAAACAGTATCTTAATGAtgttaaactattttttataaatgtttttagaatatctaaatattttatacaattcTTCAAATGTTGGTTCAAATAATGAATTTTGATAATGAATTTTCAAGTAatgatttttctaaataaatgttcCATTAACAATCCAGATAATTGCACATATCCccacaatatataaaaaacaaaatcaatgtacttatttgattaattaaataatttttttatatacaaaaattattttatataaatgttttctgATAATGTGCATTCATAATGTATTTTGTCTTTCTGGCAGATTTGAGTAAAATCTAGCTAAAATTAGAGAAAGTAATAAAGGTAAAGtattacaaaatgttttaatatatcatCCTAGATATCTGTGCATATATATATGAACAGCTAAACAGCTAAAAGTCCCCAATAGTACCCAGGTTAGTAAAGTCCAATAAAGGAGGTTAAGCTTTTTCATGTATGTCTCCTAAACTCTAGAATAGCCATCCTGATAATGTCACAGCCACACTCTCTTAGTTAAGAAACTAGAttaaaaacatattgttttagtaaagcatacacacaatgcattacatgcaggtgagtgggtttgactaATCACCTCTAGAACACGCTCCTCCTGCCTTAATGCAGCAGGCATTTTGTTAGaaatatttaaatgctttatATGGTTGTTTCTATGCTTGTTTATATAACTGCTATATTTTGAttcatagcattcatttttaCATTGATATTAAACATCTCTTGTTCAAATAAATTATGAACAGCAGctttgctaattattttctttgttctctatttccaTTTGGGAATACTCATCCGAGGTCTCTAgggatccaagacctgtgaagagatgatgatGCCAAGCATCAAGGACCTCAAGGACAACACaaatgaagagatgatgccaaccatagaggattttgaggacaacacatacaaTACAAAGAGATGATGTTA
>TCONS_00065225
CGCCAATGCAATATGAGACGTGCACATGGTGCTCAGAGGATCAGCGATGAAACTCCCTGAACAAATGCGCACGAGGGGTGACCGCGTTCGGGTCGTGGgagcagcagtctcaggagagaaccttaaacttccctctccccagacacttcctccagttcCTCCGGGGGAACCAGAGGCATTCACAGGCAAGCTGAGATACATAGtacctccagcgtgtcctgggacTTCCTTGAGGCCTCCTTCTGCACCCATGGTCCCCTGGCACAGCAGCAAATGGGTGTACCTGATTTGCCACATGTGAAAATATCCATCAGTGCATGCGGTTCATGGTTTCCCAGCAGATCATTGCCCAAAGCATCACACTCTCTCCGACAGCTTGTCGTTATCCCACAGTGCATCTTGGTGCCAACACTCACCCAGGTAAATGCTGCAGCACATCCGCAATGTAAAAGCAAAAATGACTCACCaaacaaaacaacttttttcCCACTGCTCCTGTTCCAATACTTGGGTGCTTATTGTAAAGGTTTTCTAAAGTACACTCCAAAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065224 False 2287 lncRNA 0.33 3 48914868 48949493
TCONS_00065225 True 550 lncRNA 0.51 3 48922587 48949515

Neighbor

gene id symbol gene type direction distance location
XLOC_033148 CU137649.1 coding downstream 302718 48612034 ~ 48612150 (-)
XLOC_033147 ppm1j coding downstream 441174 48425366 ~ 48473694 (-)
XLOC_033146 rhoca coding downstream 496847 48382697 ~ 48418021 (-)
XLOC_033145 CU469362.1 coding downstream 533645 48380245 ~ 48381223 (-)
XLOC_033144 capza1a coding downstream 567144 48322250 ~ 48347724 (-)
XLOC_033150 si:ch211-105j21.9 coding upstream 111562 49061077 ~ 49063085 (-)
XLOC_033151 slc5a8l coding upstream 113774 49063289 ~ 49078702 (-)
XLOC_033152 NA coding upstream 151364 49100879 ~ 49104192 (-)
XLOC_033153 tspan2a coding upstream 157533 49107048 ~ 49159207 (-)
XLOC_033154 ngfb coding upstream 219905 49169420 ~ 49215827 (-)
XLOC_033141 NA non-coding downstream 853209 47979305 ~ 48061659 (-)
XLOC_033138 AL929512.1 non-coding downstream 1312153 47602599 ~ 47602715 (-)
XLOC_033135 CABZ01055240.1 non-coding downstream 1758452 47156302 ~ 47156416 (-)
XLOC_033155 BX569793.1 non-coding upstream 361393 49310908 ~ 49322532 (-)
XLOC_033163 NA non-coding upstream 810840 49760355 ~ 49771639 (-)
XLOC_033167 BX629346.2 non-coding upstream 968739 49918254 ~ 49926317 (-)
XLOC_033168 BX629346.1 non-coding upstream 970421 49919936 ~ 49921857 (-)

Expression


Co-expression Network