XLOC_033153 (tspan2a)


Basic Information

Item Value
gene id XLOC_033153
gene name tspan2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 49107048 ~ 49159207 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064416
TTGATGTGTTTGGAAAACGCGGGAAAACAGCCCAATCCTCGCCCCGTCGTCCTGCTGGACCAATGGGCGGAGCTGGTCACGCTGAcggagtgaacacacacacacacacacacacactgctgctgctgctgctgttgacGGACTGCGAGTGGATTGTGTCTGAATAATAATATTCCTGACCTACATCTCTCACACAGGCCCGCACATTTGCGCAAACATTTTGGTCGACACGGCGAGCGCGCGCAACGAAACGGCAGGCAGGATGAGCGAAGTCCAGGGCTGCATGAAATGTGTCAAATACCTGCTGTTCGTCTTCAACTTCATATTCTGGCTTTCGGGCTCTCTGGTGTTGGCTGTGGGATTATGGTTGAGGTTTGACCCAGACACCACCAGCCTCTTATCCGAAAATGACGCACCTGAAAACTTCTTCATTGCGGTGTATATCCTGATCGGAGCAGGTGGGATCATGATGATAGTGGGCTTTTTCGGCTGTTTCGGGGCCGTGAGGGAGTCACAGTGTCTTCTGGGATCGTTCTTCGCTTGTCTCTTGTTGATCTTTGGTGCAGAAGTCGCTGCTGGAGTCTTTGGCTTTCTTAATAAAGATCAGATCATTAAAGAGGTCCAAAACTACTATGAATCAGCTACAAAGATGGAGAACGGAACTGTTATCACCTCCGCGTTTCACTCTGTGCTGGATTGCTGCGGGACCGAGTCTTCTCCGATTGAGACGTGCACTGAAGGCAATAAAGATTGTGTTCAGGCTATAGAAGATTTCTTCAATGAAAAGCTCTTCATAATTGGATATGTTGGCATTGGCATCGCTGGAGTTATGgtgATCGGCATGATCTTCAGCATGGTCTTATGCTGCGCTATCAGAAACAGCAGAGAGGTCATTTAGGACCATCTGGTTTTCCCGCTCGCCCACTTGGACTGTTTCAGAGCCCATCCGGATCTCCCATAAGGCCGTGCGGCGTTCAGCATTCTGTCTCCGATCCTTTCTGTCTTTCTGTTCTTGCATTGAAGATCAGCTCCACTGCATGGACGCCTGCTGTAACCACATTAACCAGTACTTTAATTTCCTCTTCCATTATTTATTACTGAAGCAGCACACGGGGAACATTCCACACAGCGCAGTACTGTTCTTTAATTTAAACCTGATCTCTCTTAAAGGGACACTTCACCCAAAATAACTCAAAATGGCTTCCAATATGTAGATCACTTTTTTTAGTTTAAACAAATCAAGGATATAGGCCTggagtgcccaaactcggtcccggATTGCCGGTgtgctgcaaagtttagtttcaattCCAATCAGACACGcatgaactagctaatcaagctctatctagagcacaggtgtcaaactcagttccaaagggccgcagctctgcagtttagttccaaccctaattaaacacacctgatcaaactaattgagtccttcaggcttgtatgaaacctacaggtaagtgtgttggagaagggttggaactaaactgtgcagggcttcggccctccaagaattgagtttgacagcCCTGATctagactttctagaaacatccttatcggtgtgttgagacaagttggagttaaaatctactggacaacggccctccaggaccgagtttggacaccccctgATATAGGCCTAACAATATGAACACTTTCTTgactgattgtttttatttttagcattaaagTGCCATTTTATGAAGACGGTTTACCCTAAAATCATTTCTGTTCTACTAAAGATAAACCTCCATCTTGGCTAGTCTGTGGATAATGAAGTAAACTGCATTTTGAGGGAGGGTTTGCTCAATTTAGGGTTGAAATATGCCTTTAATATagagattttgtgtgtgtgtgtcctgagtCTTGAATTAATTTCAGACTTTTATTGTTTGGACTTTTACTCACTGATGTAAATACGCTTTTCACTGATCGCCCGCTTCTCCtcttcttttaattatttattgagtGAACTAGACCGTTTTCTGCGCTAATAGATGTTGATGGGTCATATGTTGATTGTGTTTCGCTGGTTATTAATAATTGGTTCTTGTAATTTTGCCTCATCATATATAGATACTGAATGAAGCCAAGGATTGAGCATGAGAAAGATGCCTCAAGTCAACTTGAACTCAGAGTAAAACACTTGATTTTGTaagttttgtaaatgtttttaatcaaAACGATGTTATTTATGATGTTGCAGATATCTAATCGGTGATTGgttaatattaataaagaaaaatatggcCTACAAGACGTATAAATAGCCATTTAAGACATTGCAAAAAGTAATGATACATGTAGTAGGActgcatattaaaataatcaaacaGTGCGATATTTTTGTTATTCTGCGttttatattgtgatatgaatacaatttcactacaTGAGCTGAATAAACATTTGGAAACAATTTcaaatttagattgattgggatgattctgtatatgagtgcataaattataataaacaatctacaagttcaataaagaaaaagaaactaattaaataaacagggtttttattgttttctgaggAGTGGAAATGTATTCAGGTgtacagtaactgaataatcagatgtaaaataatactgcatagtcttgaTTTCAATTGGATCTTTTTTCTGATTGTATTTATAGACttaatgcatgaaaatactcacaacacatgcaaatacagaaatgcactgcaaatagcaacGTGTCGGGAGACCCTTAAAAAAAAGGTAGAGATTGTCTGTTAGATTTGATGGAGatcactcccactgcagaatcatcacaattgaacattataaattctttcctaATAGAGATTCAGTCTGGTCAAGttgtatttatatcgcaaaatcaaaaaatatcacaatgtcagatttttccaatatcatgcagccctaatcgTAACAATTGCAGCGCTGAAAATAAAAAGCTGCTTATAGAAAACTGAATATTCAGACTTCAAAATATGTTggtccatcaaaaaaaaaaaaaagttgattaatTTTGACTCAAGCATCGCCCTTGTAATCTTTTTGTTTGGTGTGCAAATCGGGGACCTTGTTTATAAAATAGTGCATAAACTGCAGCTCATGTGTGAAGCTTTGACTCGAGAGCGGCCAGACGAGGCTCCTGGGTAATGCGTGTTATTTTCCACAAGTGGCTGATTTTGCATCTGTTAAAGTTGAAGCAGCAGTTTATTACTGGGAGATCAAACATATCTTACACTGTTTTTCCCTTTTTATATTTTGCTTCTGTGAGTTTTGAGTAATGTTTGACCCACTAGTAGTCATGTGCCTTTATAACTGACAAAAGCCCCGTTATAAACATGTTTGCAGTTTTGGGTTCATGCTTATTTTTATAGCACCGCGTTGCATGTAAATAGCTTTGAAATGAGGAAATATGGTCAAACAATAAAACagctcacacaaa
>TCONS_00064417
acactgctgctgctgctgctgttgacGGACTGCGAGTGGATTGTGTCTGAATAATAATATTCCTGACCTACATCTCTCACACAGGCCCGCACATTTGCGCAAACATTTTGGTCGACACGGCGAGCGCGCGCAACGAAACGGCAGGCAGGATGAGCGAAGTCCAGGGCTGCATGAAATGTGTCAAATACCTGCTGTTCGTCTTCAACTTCATATTCTGGCTTTCGGGCTCTCTGGTGTTGGCTGTGGGATTATGGTTGAGGTTTGACCCAGACACCACCAGCCTCTTATCCGAAAATGACGCACCTGAAAACTTCTTCATTGCGGTGTATATCCTGATCGGAGCAGGTGGGATCATGATGATAGTGGGCTTTTTCGGCTGTTTCGGGGCCGTGAGGGAGTCACAGTGTCTTCTGGGATCGGTGGGTAAGAACTGTGCAACAGGAAATCAACAAACACACCTCTTTGATGATTCTCATCTGC

Function

symbol description
tspan2a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in olfactory placode and peripheral olfactory organ. Orthologous to human TSPAN2 (tetraspanin 2).

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-511 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in olfactory placode and peripheral olfactory organ. Orthologous to human TSPAN2 (tetraspanin 2).

Ensembl:

ensembl_id ENSDARG00000003754

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064416 False 3445 mRNA 0.40 8 49107048 49159207
TCONS_00064417 True 480 processed_transcript 0.51 3 49116019 49159094

Neighbor

gene id symbol gene type direction distance location
XLOC_033152 NA coding downstream 2856 49100879 ~ 49104192 (-)
XLOC_033151 slc5a8l coding downstream 28346 49063289 ~ 49078702 (-)
XLOC_033150 si:ch211-105j21.9 coding downstream 43963 49061077 ~ 49063085 (-)
XLOC_033149 NA coding downstream 157533 48914868 ~ 48949515 (-)
XLOC_033148 CU137649.1 coding downstream 494898 48612034 ~ 48612150 (-)
XLOC_033154 ngfb coding upstream 10213 49169420 ~ 49215827 (-)
XLOC_033155 BX569793.1 coding upstream 151701 49310908 ~ 49322532 (-)
XLOC_033156 rplp2 coding upstream 349598 49508805 ~ 49510553 (-)
XLOC_033157 rps26l coding upstream 360917 49520124 ~ 49526510 (-)
XLOC_033158 FO704848.1 coding upstream 369807 49529014 ~ 49537646 (-)
XLOC_033145 CU469362.1 non-coding downstream 725825 48380245 ~ 48381223 (-)
XLOC_033141 NA non-coding downstream 1045389 47979305 ~ 48061659 (-)
XLOC_033163 NA non-coding upstream 601148 49760355 ~ 49771639 (-)
XLOC_033167 BX629346.2 non-coding upstream 759047 49918254 ~ 49926317 (-)
XLOC_033168 BX629346.1 non-coding upstream 760729 49919936 ~ 49921857 (-)
XLOC_033171 CU928043.1 non-coding upstream 976112 50135319 ~ 50135437 (-)

Expression


Co-expression Network