Fish Transcriptome and Expression Database

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model fish

XLOC_033161 (BX323459.1)

Basic Information

Item	Value
gene id	XLOC_033161
gene name	BX323459.1
gene type	coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007117.7
NCBI id	CM002890.2
chromosome length	60270059
location	49628431 ~ 49634787 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064432
atgtccttccagctgcaacccaCGGGCATGTCAAAGACACATCTCAGCTTGGAGTCCATCAGATCTTCAGGCTTGGCATCAGCACTCACCACTCCCTCAGTGTCGGTCATGTCAGGCGGAGCCAGCAGAGACTGTACCATAAACTTGTGTTTGCTTTTCTCATTCGGGTCATAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000109508

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00064432	True	174	mRNA	0.51	3	49628431	49634787

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_033159	ppp4r1l	coding	downstream	80751	49541278 ~ 49547680 (-)
XLOC_033158	FO704848.1	coding	downstream	90785	49529014 ~ 49537646 (-)
XLOC_033157	rps26l	coding	downstream	101921	49520124 ~ 49526510 (-)
XLOC_033156	rplp2	coding	downstream	117878	49508805 ~ 49510553 (-)
XLOC_033155	BX569793.1	coding	downstream	305899	49310908 ~ 49322532 (-)
XLOC_033162	apcdd1l	coding	upstream	15383	49650170 ~ 49673476 (-)
XLOC_033163	NA	coding	upstream	125568	49760355 ~ 49771639 (-)
XLOC_033164	nelfcd	coding	upstream	147097	49781884 ~ 49801173 (-)
XLOC_033165	gnas	coding	upstream	177044	49811831 ~ 49873020 (-)
XLOC_033166	atp5f1e	coding	upstream	258701	49893488 ~ 49902140 (-)
XLOC_033152	NA	non-coding	downstream	524239	49100879 ~ 49104192 (-)
XLOC_033149	NA	non-coding	downstream	678916	48914868 ~ 48949515 (-)
XLOC_033148	CU137649.1	non-coding	downstream	1016281	48612034 ~ 48612150 (-)
XLOC_033145	CU469362.1	non-coding	downstream	1247208	48380245 ~ 48381223 (-)
XLOC_033167	BX629346.2	non-coding	upstream	283467	49918254 ~ 49926317 (-)
XLOC_033168	BX629346.1	non-coding	upstream	285149	49919936 ~ 49921857 (-)
XLOC_033171	CU928043.1	non-coding	upstream	500532	50135319 ~ 50135437 (-)
XLOC_033172	NA	non-coding	upstream	724870	50359657 ~ 50380212 (-)

Expression

Co-expression Network