XLOC_033163


Basic Information

Item Value
gene id XLOC_033163
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 49760355 ~ 49771639 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065231
ttttttttgacaatcattcattcaaacatttaCTCGGAAAAGATTTCATCATTCACAATCCATATTCTTCACCTGCCACACTAACAAAATTGGCATTAAGTGGATTTTGCTGGCAGCACTCATTTagcgccaaaaaaaaaaaacaattaccaaACAAAGACACCGTGATCATGTCATCATTCATGTCTggaatgaaaatcaaatgattgcATTAAACATATTCTGATCAGAAAAAACCAACAACAGTATTTGCAGAGAGATATTTCACGTGCCTCCTCTCATCCCTGAAACATTTCTTATGGCAACTACAAACTGTGAACGAGAACATTACAAAACATCAAGACGATCTTCAACTTTTATTTCATTCATAACCGTGTATACAGGGCTGCTTATTACTTTGTACTTCCGATGGAGCAGAGGAAGGAGTGTACGAGTCTAATGGATGCAACGTTTGTACAAGGCGTGattaatattaaactttttttttttagtggttAAGAACAGTCTGTACTGATCTCAGACCAGTCTCCTCC
>TCONS_00064435
AAAGCAACTAGTTAGCAGCTGTTATCCACGTGAGCGGATGGGATGGCAGATCAAAGTCCAGCCAAAAAAGTAAAATGTCAAGTCAAGGGTTTCCTTTCTGAAGTGAGCCCTATAAAAAACACAAAGGCTCCATATTTTGATGCCGTTCTTCAACATGAAGGTGAATGCAGCAAAATTGTGTCCTTTAGACCAGAGGATCACATGCACTTCCACAATGCTGAAAGCACGCGGAGTCTGGTGACACTAGAGGATGTCGTATTACAGCCGTCCACCAAGTCCAGCAGAAAAATGAACGTGTTTTACACACACCGCTCCAAAATGTCCTGCGTTCGCGACCTGAGAGAAGCATTCAAACACATCCCGTCTGCTGGACCACGAGATATACAGGTGTCTGAACTTCTAAAACGGGATACAAAACCAAATAAGGTCAATATTAATGTGAAGATCATCCAGGAGGTGTGCAAAGGGAACAAAGTTGTCTGGGATGGAAGCTACCTTCCTAAAACTGAGTATATAGTAGCGGACACTACAGGATCCATCAGTCTGACGGTCTGGCGTGAACACAACATTACTGTCGGAGACTGGTACACCATCACTAATGTCTCTGCGAAAGAATTCAGAGGCAAAGCAACTCTATCGACCACCAGAAACACACAGATCCTCAACATACCATCTCGAGGGACAGCGGCTGCTGCTGAAGTGCCGACGCAGACTATAAAATGTGACATCATTGGTGCAAACATTGAAAGTCTTATCATTTGTCCACATTTACATGAACTCAAGAGTGTGACATCATCAAAATCCACTGTGTATTGTTTTTCATGCAACACGTATTACAAAACCACTGCCATTGTCACAAAGTTTAGTGGTCATCTGAATCTTAAAGCAGAATCGGGGAAGGTTGTGAGGGCCAGGATTGAAGATGAGCTGATCAGATCAGTGGTCAGAGTGGAGGACGCTGCGTCTCCACAGGACATCATTCAGAGATTAATTGAGCTGCCGCCCATGCAGATTACCATCCGTGAAAACAACATTGTGAAGATTGAAGATGTTCCTAAAAACACTGAAATCAAGGCTGAAGCTGAAGCAGAGCTGCCTGTTAAAATGGAGCCTGTGGAAGAATCTGACGACTTCTGTTCACCACCAGACCATGGGGTTTTATTCAGTTCACAATCCAGAAAAAGACCATTTACTGACTGAATCTGATCATCGAAGATCACTTAAACTTAAAAAAGCTAAACTCAACTTAAAAAGCATTTTAGTTACAAGTACAAGATGCAAAAACATATCAATATatgcagcatttttttaaatgaaaattaaccatagttttatatatatatataatatatatatatatatatatatatatataaaactttaacccccggtttcacaaacaaggtttaaggctagtcaggattaaattgcatgtttgagctgtctcaacttaaaaataacttgcggtgagatgtcttaaaatatgtcagtgtaattttttttgtctccaggtgcctaccagtaatatttttttaaggccatttttataaatgagTCTTAAATAACCttatttaactaaggcctagtcctggcttaatctaagtcatgtttgtgaaactgggcctaaATATGATAAAACCATAGCAGGCTAAGAAGTCGCACACAAAATATCGTTTGGCTACACTAGCCATAGTTTAACTATGATATTAGCTGTGGTTTTACTATTAGTAGTCAGTGCACGCATCCAAAAAGTCATGGTGAATgcaatttttatataataaacctGTGGATACTTTTCATAAGGGTTGGCAAAGCATATGCTAACTAGAGTAGCCTAATGCTTTTCTAAATTAGTTACCACACATTACATTAAAGCACAAGGCCCGCTATACTTTTATGGTTAGTGTGTACACAAAGGACACATTCCTGAATTATCTTCTAGAAGAGTGACCTGGTGCTTTGCTTTTAATGTGAACTTATGATGGATATAAACTACAAATATGTCAGTTTTGGAGAAAAGTTAATGACATACGTCTGATGATATTTGTCTTAACGTTAATTTAATAACTTTGATGTGTGTTTCTTATGATAAAAAGATTCCTGTTAAAAAAAAGCCAAAGAAGAACTGTgcattttacatttatacaaatacacgtatttatttgttactttaatATGTTATAAtgataaaaagtaaatatttaacaatgttGAGGAGTAGGCTACAGTCTTACCGTTTTAACCAGCGTTTCCAGGGCAGCCATTGCGAAAGTGGCCTTCGCTATTTCTTCGCTATTTCTTCTGCCATTCAGCGAATGGAGTTATTCGCTGAAAACAGAGACAGAATGGCCTTAAAAGTTCATCTGATTGAGCTCAAATTGTTTTTATGcggtaaaaaaatgttttttctttcctGTTGACAGCAAAAGGGCGTCTCGAAAATCTATTTTATACAGTCTATGCTCAAAATTAATGGTGAATGACGACGCTAGCATTAACGTTACACCTGcagattacattaaaaataaatcaaacgtGTTATTTGTTAGCCGAACACACATTACATAAAATAGTTTTGATAATATATCGAATATTTTTTGTTGCTAAAGCTATAAACTACGAGTTCTCACAGCCCTGTGGGGAATTATTAATGTAAATGAGCAGTATGTCAGATTGTCCATTAAAATAAGCACAAAAAAACAACTTTAACAATGTTATTTGAAGACCTATGTATGTGAGCCTACTTACCGCATCTCAAATTCTCAAAAGAATATTAAAATCCAGAGAAATTTGCCTTTTAAACACATGACAGACCGTCGTCTCGCCATCACTAGTCTATTACGTCACAAACTCTCGATTTTAGGTTTTGCTGTGAAAAAACAGGATCGCTGATTCATACTGATTGCTTGTCGAATGTTCTGATATGTGCCAATGTTTTACCATAGTAGTTGTATATTGCTGATAAATTATCAATTTCAGATGACTTACAGCAAATAAGACAAACATGAgtctaaaacaaattaaacaaacccATTTTTAAGACGCAGCTGTTAATCAGTATTTGTGCATGTCAGTGTTGTGATTTTAAGGTTTACATTAtgttgtggtttatttataactTATTGTGATGTATGTTTCTTCTCTTTGAATTAAAACcctctaaatcagtggttctcaaacgtttttcatcaagtaccacctcagaaa
>TCONS_00065232
GTTGAATCTCAGGCGGTCATATGATCATCACACGGGGCTGCACTGCGGGTTTATTCTGCCTGTCTGCCTGGAGGCGTGGAGGAAACATCGAAACTAACTTTCTTATTGGGCGAAGATctgttaagaagaaaaaaaaagcgctTGCTAATGTCAGGCGTATTCCTGCCTTAACTGACGGTAAATTTGACGGTGCACGGGAAGTCGAACCCGCAGGTAAAGCCCATTGAGATCTTCTGTTTCGGAAAAAGAGAACAGAGCAAGGGGTGTTTATCATAAAAGTTTAACCTCCAAAAGCAACTAGTTAGCAGCTGTTATCCACGTGAGCGGATGGGATGGCAGATCAAAGTCCAGCCAAAAAAGTAAAATGTCAAGTCAAGGGTTTCCTTTCTGAAGTGAGCCCTATAAAAAACACAAAGGCTCCATATTTTGATGCCGTTCTTCAACATGAAGGTGAATGCAGCAAAATTGTGTCCTTTAGACCAGAGGATCACATGCACTTCCACAATGCTGAAAGCACGCGGAGTCTGGTGACACTAGAGGATGTCGTATTACAGCCGTCCACCAAGTCCAGCAGAAAAATGAACGTGTTTTACACACACCGCTCCAAAATGTCCTGCGTTCGCGACCTGAGAGAAGCATTCAAACACATCCCGTCTGCTGGACCACGAGATATACAGGTGTCTGAACTTCTAAAACGGGATACAAAACCAAATAAGGTCAATATTAATGTGAAGATCATCCAGGAGGTGTGCAAAGGGAACAAAGTTGTCTGGGATGGAAGCTACCTTCCTAAAACTGAGTATATAGTAGCGGACACTACAGGATCCATCAGTCTGACGGTCTGGCGTGAACACAACATTACTGTCGGAGACTGGTACACCATCACTAATGTCTCTGCGAAAGAATTCAGAGGCAAAGCAACTCTATCGACCACCAGAAACACACAGATCCTCAACATACCATCTCGAGGGACAGCGGCTGCTGCTGAAGTGCCGACGCAGACTATAAAATGTGACATCATTGGTGCAAACATTGAAAGTCTTATCATTTGTCCACATTT

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0034440 lipid oxidation biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006635 fatty acid beta-oxidation biological_process
GO:0009056 catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044242 cellular lipid catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0019395 fatty acid oxidation biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-110411-157 Predicted to enable DNA binding activity. Predicted to be involved in double-strand break repair via homologous recombination and response to ionizing radiation. Predicted to be part of SOSS complex.

Ensembl:

ensembl_id ENSDARG00000095783

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065231 False 533 lncRNA 0.36 2 49760355 49762940
TCONS_00064435 False 3207 mRNA 0.37 3 49761229 49769100
TCONS_00065232 True 1060 lncRNA 0.45 4 49763666 49771639

Neighbor

gene id symbol gene type direction distance location
XLOC_033162 apcdd1l coding downstream 86879 49650170 ~ 49673476 (-)
XLOC_033160 BX323459.2 coding downstream 105120 49585461 ~ 49655235 (-)
XLOC_033161 BX323459.1 coding downstream 125568 49628431 ~ 49634787 (-)
XLOC_033159 ppp4r1l coding downstream 212675 49541278 ~ 49547680 (-)
XLOC_033158 FO704848.1 coding downstream 222709 49529014 ~ 49537646 (-)
XLOC_033164 nelfcd coding upstream 10245 49781884 ~ 49801173 (-)
XLOC_033165 gnas coding upstream 40192 49811831 ~ 49873020 (-)
XLOC_033166 atp5f1e coding upstream 121849 49893488 ~ 49902140 (-)
XLOC_033167 BX629346.2 coding upstream 146615 49918254 ~ 49926317 (-)
XLOC_033168 BX629346.1 coding upstream 148297 49919936 ~ 49921857 (-)
XLOC_033155 BX569793.1 non-coding downstream 437823 49310908 ~ 49322532 (-)
XLOC_033152 NA non-coding downstream 656163 49100879 ~ 49104192 (-)
XLOC_033149 NA non-coding downstream 810840 48914868 ~ 48949515 (-)
XLOC_033148 CU137649.1 non-coding downstream 1148205 48612034 ~ 48612150 (-)
XLOC_033145 CU469362.1 non-coding downstream 1379132 48380245 ~ 48381223 (-)
XLOC_033171 CU928043.1 non-coding upstream 363680 50135319 ~ 50135437 (-)
XLOC_033172 NA non-coding upstream 588018 50359657 ~ 50380212 (-)
XLOC_033174 NA non-coding upstream 686329 50457968 ~ 50505438 (-)

Expression


Co-expression Network