Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_033166 |
| gene name | atp5f1e |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 49893488 ~ 49902140 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| atp5f1e | Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP synthesis coupled proton transport. Predicted to be part of mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1). Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency nuclear type 3. Orthologous to several human genes including ATP5F1E (ATP synthase F1 subunit epsilon). |
| id | name | namespace |
|---|---|---|
| GO:0015986 | ATP synthesis coupled proton transport | biological_process |
| GO:0005743 | mitochondrial inner membrane | cellular_component |
| GO:0000275 | mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) | cellular_component |
| GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | molecular_function |
| GO:0016887 | ATPase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-110411-22 | Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP synthesis coupled proton transport. Predicted to be part of mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1). Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency nuclear type 3. Orthologous to several human genes including ATP5F1E (ATP synthase F1 subunit epsilon). |
| ensembl_id | ENSDARG00000095897 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00064439 | False | 404 | mRNA | 0.48 | 3 | 49893488 | 49898881 |
| TCONS_00064440 | True | 958 | processed_transcript | 0.45 | 3 | 49893488 | 49902140 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_033165 | gnas | coding | downstream | 20468 | 49811831 ~ 49873020 (-) |
| XLOC_033164 | nelfcd | coding | downstream | 92315 | 49781884 ~ 49801173 (-) |
| XLOC_033163 | NA | coding | downstream | 121849 | 49760355 ~ 49771639 (-) |
| XLOC_033162 | apcdd1l | coding | downstream | 220012 | 49650170 ~ 49673476 (-) |
| XLOC_033160 | BX323459.2 | coding | downstream | 238253 | 49585461 ~ 49655235 (-) |
| XLOC_033167 | BX629346.2 | coding | upstream | 16114 | 49918254 ~ 49926317 (-) |
| XLOC_033168 | BX629346.1 | coding | upstream | 17796 | 49919936 ~ 49921857 (-) |
| XLOC_033169 | asip1 | coding | upstream | 73770 | 49975910 ~ 49983329 (-) |
| XLOC_033170 | raly | coding | upstream | 119270 | 50021410 ~ 50204262 (-) |
| XLOC_033171 | CU928043.1 | coding | upstream | 233179 | 50135319 ~ 50135437 (-) |
| XLOC_033155 | BX569793.1 | non-coding | downstream | 570956 | 49310908 ~ 49322532 (-) |
| XLOC_033152 | NA | non-coding | downstream | 789296 | 49100879 ~ 49104192 (-) |
| XLOC_033149 | NA | non-coding | downstream | 943973 | 48914868 ~ 48949515 (-) |
| XLOC_033148 | CU137649.1 | non-coding | downstream | 1281338 | 48612034 ~ 48612150 (-) |
| XLOC_033172 | NA | non-coding | upstream | 457517 | 50359657 ~ 50380212 (-) |
| XLOC_033174 | NA | non-coding | upstream | 555828 | 50457968 ~ 50505438 (-) |
