LOC110515089 (LOC106595012)


Basic Information

Item Value
gene id LOC110515089
gene name LOC106595012
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 6372353 ~ 6376902 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947960.1
AATGCTTCttgtgtgacgtataatctagtggacgagATGGGCAGCTTCTTCACCAgcaacaacatgctgatttaacCACGCGGTAGCTTGCTAGTTAACATAAAACCGAAACATTGAAGCTTTTTAGACCAATCTTGTGTATATTACTCTTAGTGTTTAGAACAAAAATGTGTTTACGTTTTTACTAGTTAATTTAAACGTAATTTGCTTGTTAAAtttgcaaatgtgttaaattgaTACTGCACTAAGCTAATCGTCCGGATCATGAGGTCACTAACCTCGACGGAGAAAGAAGCTGtgatgaaaggagaggaagaagctttcagaatgaaaaaggaggaagaggatgatattacagtgaaagaggtTGTCAAAAAGGAGGAAGATGCCATAACATTGGAAGAACATTTTAGagtaaaagaggaagaggaggctatcTCAATAAAAGAGAAGaaggaagacgttttgggagtgaaaaAGGAGGAGACTGAATATCAGATTAAGACCAGAGAGATACATTACTATTATGGATCccctggggagcctcaacaacatcctgatgctgacgaggcagagaagagtctctccagatcagaacaccagatggacaatgctagcccttcctccctcctggaGTCCCCGTGTCGTGCCTCTCCTGttagcaccttactgctgggtatgaagaggttgtctgtgctgctggtggactgcaggaaaacaacggggctgagtggaactgtgagaggaggagaagagaagaaaagatcagatttgacacatcaaaGAGGAAAACCAAACTTGGAGAAACCAGAAacgtccaaaccagcaagacAACACctctgctcccactgtggaaagagttttaaccagtTCGTTAGCATGAgaagacatgagagaatacacacaggggagaagccacaCCATTGCAcacagtgtggaaagagttttaaccagtTAGGAAACATGAAATCTCACGaacgaatacacacaggggagaagcctttccattgctcccagtgtggaaagagttttggaGAGTCAGGAAACCTGAATGCTCACGAGCGaatgcacacaggggagaagccttaccactgctcccactgcGGAAAGCGTTTTAACCATTCAGGAAAGCTGAAAGAACACATGAGACTGCACAAAGAGGAGAACCCTTACAAATGCTCAGACTGTGGGAAGACATATTACTCATCATGGTCACTTAAACGTCATGTGAGAATCCACACGGGAGAATAATTACTTCTCTTAGGTTTTTCACATCACGTTGacttaaaattcatcagagaacatacacagtggtcccgttgtcttatattgttgactgaGAATGTGTTTACCTGTTTATACCAGATGAAATTGAATTGTACAAAGTATACTTAAACAtatatttgtgtgtttttattagaAAACATGAATTGAGTATGTAAGTTTGAATAGAGAGTtgtatattattttttaaactctttgtgtgtgtttatctgggtgtgtcattcctccagcactacagataatcaagtgatatttggatgtgatgcattagttccattgttgacatttgcattgttggcccactgatgatttaatgaaatgaaaatgttcagactctgtaatggaaaatgttaattgtttgtgtgtccacATAACTGAGTATGTGACTAACCTTGTGAAACTGTCCTATTATAATCTCCTGTTCTTGGGAGTATCATTCTGTGTTGCAAACCAGCTGCACCTGCATCCTTGTATGAATAAAGTCCCGCCCAGGAACAGGAAACTATAAAGATATGTGCTCATCACCCAATGCTTCAGGAATTCAGACTGTCTACACTGcgctgtgtaactctgttattctctctgagctcagaaataaagaatcttggtttga

Function

NR:

description
zinc finger protein 345-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947960.1 True 1897 mRNA 0.41 4 6372353 6376902
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Neighbor

gene id symbol gene type direction distance location
LOC110516175 LOC106591075 coding downstream 170628 6193283 ~ 6201725 (-)
LOC110516679 LOC106591074 coding downstream 185444 6177918 ~ 6186909 (-)
LOC110495005 LOC106593039 coding downstream 416491 5929810 ~ 5955862 (-)
LOC118940013 LOC106595148 coding downstream 830829 5528929 ~ 5541524 (-)
LOC118940012 LOC106595237 coding downstream 847187 5522090 ~ 5525166 (-)
LOC118940007 LOC106592670 coding upstream 6501 6383403 ~ 6387459 (-)
LOC118940068 LOC106588149 coding upstream 256909 6633811 ~ 6635952 (-)
LOC118940232 NA coding upstream 266647 6643549 ~ 6646057 (-)
LOC118940230 NA coding upstream 275455 6652357 ~ 6653918 (-)
LOC118940235 LOC106593103 coding upstream 310927 6687829 ~ 6703507 (-)
G1417022 NA non-coding downstream 7396 6364343 ~ 6364957 (-)
G1416991 NA non-coding downstream 19796 6262352 ~ 6352557 (-)
G1417011 NA non-coding downstream 61109 6310781 ~ 6311244 (-)
G1416994 NA non-coding downstream 86769 6268893 ~ 6285584 (-)
G1416936 NA non-coding downstream 115840 6213913 ~ 6256513 (-)
G1417077 LOC106590736 non-coding upstream 137125 6514027 ~ 6514599 (-)
G1417085 NA non-coding upstream 160219 6537121 ~ 6537804 (-)
G1417111 NA non-coding upstream 229259 6606161 ~ 6606955 (-)
G1417117 NA non-coding upstream 241085 6617987 ~ 6620111 (-)
G1417123 LOC106595205 non-coding upstream 252319 6629221 ~ 6630660 (-)
G1416942 LOC106591698 other downstream 280323 6091441 ~ 6092030 (-)
G1416889 NA other downstream 371766 5999311 ~ 6000587 (-)
G1416869 NA other downstream 467826 5903158 ~ 5904527 (-)
G1416765 NA other downstream 911108 5460597 ~ 5461245 (-)
G1417032 NA other upstream 358126 6735028 ~ 6766126 (-)
LOC118940071 LOC106593103 other upstream 477542 6852581 ~ 6965513 (-)
G1417206 NA other upstream 540406 6917308 ~ 6918256 (-)
LOC118940245 LOC106564023 other upstream 833287 7209499 ~ 7245761 (-)
LOC110515395 LOC106595531 other upstream 1143241 7519528 ~ 7537366 (-)

Expression

LOC110515089(LOC106595012) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110515089(LOC106595012) Expression in each Bioproject

Bar chart with 21 bars.
LOC110515089(LOC106595012) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network