LOC110511216 (LOC106564015)


Basic Information

Item Value
gene id LOC110511216
gene name LOC106564015
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 6586931 ~ 6595236 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947930.1
ccgtgacgtataatggactggacggacgcttcttcaggaacaacaaggcggctactctttcaaccacctctttagcttgctagacaacataaaactgaaagattgacGCTTTAGATCATCTTAATGTACATTATctaatctcagtgttttaaacaCAAATCTGTTGACGCATTAACTGGTTAACTGTAACCTAATTTGCAAACTTGTTATATATTGATACTGAGGTTAGCACTAGGCAAGTCGCTAataatagctaactagctagctagctaccatcccTTACCATGAGCTCACTAAACTACTCATCCCCTGCTAAAGAAGAGGAGGTTTGCCGtccggagaaagaagctctggcgctgaacattgtcgtggaagatgaagaggaggatgttacagtgaaagaagagaaagaaccttttagaatgaaaaaggaggaagatgagactgttatagtgaaggaagaagatgctgttatagtgaaagaagagaaagaatatttcagaatgaaaaaggaggaagaggaggctgttatagtgaaagaagatAATGAACATTTTGGAGAGGAAGGGGATCCTATCTCAATAAAGGTGAAGGGGGAAGACGTTTTGgcagtgaaagaggaagagacagaatatcagattaacaccagagagagacatgactatcgtggatcctctgggaagcctcaacaacatcctgatgctggcAAGGctgagaagagtctctccagatcagaacaccagatggacaacgctagcccttcctccctcctggaGTCCCCGTGTCATGCCTTTCCCGGTAGCGCCTTACTGCTGGGTAtaaagaggttgtctgtgctgctggtggactgcaggaaaacaacggggctgagtggaactgtgagaggaggagaagagaagaaaggatcagatttgacacatcaaagagaaagaccagactcagaggaaccagagccagggacgtccaaaccagcaagacgaCACCAGTGCTCCCAGTGTGAAAAGAGTTTTAACCACATACGTAACCTGAAAACAcataagagaatacacacaggggagaagccttaccactgctcccagtgtggaacgGGTTGTAACCGGTTAAGGGACCTGAaacaacacgagagaatacacacaggggagaagccttaccactgctcccggtgtggaaagagttttacccagttatgtaacctgaaaacacatgagcgtatacacacaggggagaagcgttaccactgctcccagtgtggaaagagttatACAACATTTGGGAGCCTGAAAATacatgagagaatacatacaggagaaaagctgtaccactgctcccagtgtggaaagagttttaaccagaAAGGATACCTGAAACAACATgcgagaatacacacaggggagaagccttaccactgctcccagtgtggaaagagttttaaccagaAAGCCCACCTGAaccaacatgagagaatacacacaggggagaagcctcaCCACGGCTCCCAGTTTGAAAAGGGTTTTAACAAGTTAAGGGacctgaaacgacatgagagaatacagaCGGGGGAGAAGCctcaccactgctcccagtgtggaaagagttttacaatGTTGGGGAGCCTGAAAATACATGAGCGGATGCATACAGGAGAAAAGCCGTACCactgctcccattgtggaaagagttttacccactTAAGTAACCTGAAAACACACgatagaatacacacaggggagaagccctaCAACTGCTCCCAGTGTAGAAAGAGTTTTACCCACTTGTGTAACCTGAAAACTCATGaacgaatacacacaggggagaagccttaccactgctcccattgtGAAAAGAGTTTTACAGAGTTAGGTAACATGAGAAAACATGAGATAAAACACAGAGGAGATCAAGATGTTGGCTTCTGAACAGCATGACATCGGGAAGATGAAGGCTTCTGAACAGTGGGACAGATAAAGGTCCAATACATGGTGGGTCAGTAGTCCCCAGAGACTCTGAATGTGTCTTGACTTTCCAGTGTTTTCCGTACTCCGTATATCATATTTTGTATATCGTACTCTGTCCtcaatttgagagaaaaaaatccaattaGAGCAGTTTTTCCTCAACTCGGTCCTTGGGGGATGATCAGCTTTACTATTGATCATAGATTGTagattccatcaatgtaattgtctgcatcatttccaattacccatatattttgggggggtAAATGTACATATATACTGTTATCTCAGAATGATGTTGGGGATAATTAGGTAGTAAACTCCACCAGAAATACATTAACATGTATGACTTTACGTTAAACAATCATTTTCACTCATGACTACTGGTTTCAATTGACATTTTCATCAAACTAACAAGCAAATATTTTATGAATTTATTGTTACAAATCAACTTGCAAGGTTTCTAGCTAACTAGCCTtaccagcctgctaacgttagccttaccagcctgctaacgttagccttaccaacctgctaacgttagccttaccaacctgctaacgttagccttaCCAGCCTGCTACTGTTCAAAACTTTTAGAACACCTAATTTTTTCATGTACTCTGAAATTAAAGCATCGAACAAATAAACAATTGGAGacaaaatgaataaataatggAATCTTTTTATTTATCAAAATGTAATCAACATTTTTTGACTCAGAGCCGcacatcagggtataatcacccTCTAGGAGctccaagctgtcttcatcagggtataatcacactctaggagctccaagctgtcttcatcagggtataat

Function

NR:

description
zinc finger protein 345-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947930.1 True 2784 mRNA 0.43 4 6586931 6595236

Neighbor

gene id symbol gene type direction distance location
LOC118940005 LOC106593103 coding upstream 8049 6523504 ~ 6578882 (+)
LOC118940019 NA coding upstream 71368 6514024 ~ 6515563 (+)
LOC118940067 NA coding upstream 118368 6449002 ~ 6468563 (+)
LOC118940066 NA coding upstream 147162 6430118 ~ 6439769 (+)
LOC118940008 NA coding upstream 167674 6403459 ~ 6419257 (+)
LOC110514652 NA coding downstream 25935 6621171 ~ 6632046 (+)
LOC110514651 LOC106595305 coding downstream 40870 6636106 ~ 6660778 (+)
LOC118940231 NA coding downstream 51371 6646607 ~ 6648168 (+)
LOC118940233 NA coding downstream 59232 6654467 ~ 6656974 (+)
LOC118940246 NA coding downstream 770700 7365617 ~ 7381649 (+)
G1416394 NA non-coding upstream 19548 6566940 ~ 6567383 (+)
G1416346 NA non-coding upstream 248402 6337839 ~ 6338529 (+)
G1416342 NA non-coding upstream 257241 6328428 ~ 6329690 (+)
G1416338 NA non-coding upstream 284884 6301763 ~ 6302047 (+)
LOC118940064 LOC106608470 non-coding upstream 290415 6292497 ~ 6298972 (+)
G1416405 NA non-coding downstream 9767 6605003 ~ 6613302 (+)
G1416429 NA non-coding downstream 82546 6677782 ~ 6683556 (+)
G1416439 NA non-coding downstream 109886 6705122 ~ 6706588 (+)
G1416451 NA non-coding downstream 124335 6719571 ~ 6720681 (+)
G1416180 LOC106594343 other upstream 369678 6216219 ~ 6217253 (+)
G1416304 NA other upstream 417384 6168395 ~ 6169547 (+)
LOC110493338 LOC106590982 other upstream 521474 6056654 ~ 6066070 (+)
G1415943 NA other upstream 1417358 5168936 ~ 5169573 (+)
G1416413 NA other downstream 22947 6618183 ~ 6650197 (+)
G1416452 NA other downstream 124551 6719787 ~ 6720394 (+)
G1416462 NA other downstream 157566 6752802 ~ 6769590 (+)
G1416559 NA other downstream 732819 7328055 ~ 7334299 (+)
G1417359 LOC106594003 other downstream 1007519 7602755 ~ 7606668 (+)

Expression


Co-expression Network