LOC110514651 (LOC106595305)


Basic Information

Item Value
gene id LOC110514651
gene name LOC106595305
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 6636106 ~ 6660778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472149.2
AGTCAATCAACGAAGAACCGATCCAATCGTTGGTGCGCAATTAGGTCATTGTTTGCTGGGTTCAAATCACTTCCTTTCGGTCAATATGTCCCGGAAAAGAACCATGCTGTTTGTTCTACTAACAAACAGAGGACTGCAATGAGACCAAACATGACTCGATAAACGTCATTTTAGATTGAGTAATTACATCGAACGTTACATCCAAAGTTGGAGGACACGGAATTGACTACACAAGCCATTTACAAAATGTTTCAGTTAGGCTATAGAAATGGATTATATGAACAAAACAACACTTTATTGTTTCGTCGTGACCTTTAGTGTTGCCAAAAGAAgaagatattcaaagCAGGGGAGAGACCAGACACAGACTCTCACTGTGACAGCTTGAAGAGTGCTTCAGGGGAACCAGACCCAGAGACGTCCAAACCAGAAAGACGACgacactgctctcagtgtggaaagagttttagctGGTTTGGGAacctgaaacgacatgagaggacacacacaaagGAGAGACCCTACCAATGCATTCAGTGTGGAAAGAATTTTAATTCATCAGAATATatgaaaaaacatgaaaaaatacactctaagccttaccactgctcccagtgtgaaaGAAGTTTTACCCAACGGGGggacctgaaatcacatgagaggacacacacaggagagaagccttaccactgctcacaGTGTGAAAGGAATTTTTTCTCATCGGGGTCCTTGAAAAGACATGAGGGGACACACTCTGTGGAAAAACCTTTCCACTGTTCTCATTGTGAAAAGAGTTTTAGGAATTTATGGAACCTGAAAGAACATGAGCAAAGACACACAATGGAGAAGCCTTTCCAATGCTCCCACTGTGGAATTAAATTTACATGGTTTCAACAACTTAAAGAGCATGAAAGAATCCACATTGTAGAGAAAAGTTATCAGTGCCTCCGGTGTGGAAAGATATTTATGCAGTTAGGGCACCTGAAAGTCcatgaggtaacacacacaggggagaagccataccaATGCTCCGAGTGTGGAAAGAGATATAGCACCTCACATGGACTTAAAATTCATCAGAAAACACACATTGTGCTCCCACAATTGTCTCATATTTTTGACTgagaatgtgtttttgtttatgcTATACATGAAATCTAATTATAGAAAGTGGActcaaaaatacatttctatgatttatttattttattttgaaatatAAATTAAATATGGAGTGAGTAAGTGCATGGCTTTCCCAGATTTCTATGACgtataattaattacaatatgagtgaaatcaTTTTCCCAAAAAATGGTAATTAAGTACATTAAAAAAGgtagcttttctgtgttggaacgGTGTGCATATCCAGACTACAGAATGTTGTGGGCGTATACAagtcattaaagggatactttgtgaTTTTGGCaacgaggccctttatctacctCACCAGAGTCCGATGAACTCGTGGATATTATTTTTTTAGGTGTCCGTGTCCAGTATGGGGGAAGTTTGAGGTAGGTTTGTGAGTCAGTGCTAACTAGATGGAATAGATGAATCCACTCATTTTGAAGGGGTAATCTTACATACACTATAAATACAAAATGATGTTGCATGTCTTAACCCATATTCCCACTATTGATGAATAATATAATGATGTAGGTACTTCAACAGTTGTTCCATCCTCGAGCCCAACGTGCCcagttcaataaataaataaaggagaA
>XR_005036760.1
GTCAATCAACGAAGAACCGATCCAATCGTTGGTGCGCAATTAGGTCATTGTTTGCTGGGTTCAAATCACTTCCTTTCGGTCAATATGTCCCGGAAAAGAACCATGCTGTTTGTTCTACTAACAAACAGAGGACTGCAATGAGACCAAACATGACTCGATAAACGTCATTTTAGATTGAGTAATTACATCGAACGTTACATCCAAAGTTGGAGGACACGGAATTGACTACACAAGCCATTTACAAAATGTTTCAGTTAGGCTATAGAAATGGATTATATGAACAAAACAACACTTTATTGTTTCGTCGTGACCTTTAGTGTTGCCAAAAGAAgaagatattcaaagGGGAGAGACCAGACACAGACTCTCACTGTGACAGCTTGAAGAGTGCTTCAGGGGAACCAGACCCAGAGACGTCCAAACCAGAAAGACGACgacactgctctcagtgtggaaagagttttagctGGTTTGGGAacctgaaacgacatgagaggacacacacaaagGAGAGACCCTACCAATGCATTCAGTGTGGAAAGAATTTTAATTCATCAGAATATatgaaaaaacatgaaaaaatacactctaagccttaccactgctcccagtgtgaaaGAAGTTTTACCCAACGGGGggacctgaaatcacatgagaggacacacacaggagagaagccttaccactgctcacaGTGTGAAAGGAATTTTTTCTCATCGGGGTCCTTGAAAAGACATGAGGGGACACACTCTGTGGAAAAACCTTTCCACTGTTCTCATTGTGAAAAGAGTTTTAGGAATTTATGGAACCTGAAAGAACATGAGCAAAGACACACAATGGAGAAGCCTTTCCAATGCTCCCACTGTGGAATTAAATTTACATGGTTTCAACAACTTAAAGAGCATGAAAGAATCCACATTGTAGAGAAAAGTTATCAGTGCCTCCGGTGTGGAAAGATATTTATGCAGTTAGGGCACCTGAAAGTCcatgaggtaacacacacaggggagaagccataccaATGCTCCGAGTGTGGAAAGAGATATAGCACCTCACATGGACTTAAAATTCATCAGAAAACACACATTGTGCTCCCACAATTGTCTCATATTTTTGACTgagaatgtgtttttgtttatgcTATACATGAAATCTAATTATAGAAAGTGGActcaaaaatacatttctatgatttatttattttattttgaaatatAAATTAAATATGGAGTGAGTAAGTGCATGGCTTTCCCAGATTTCTATGACgtataattaattacaatatgagtgaaatcaTTTTCCCAAAAAATGGTAATTAAGTACATTAAAAAAGgtagcttttctgtgttggaacgGTGTGCATATCCAGACTACAGAATGTTGTGGGCGTATACAagtcattaaagggatactttgtgaTTTTGGCaacgaggccctttatctacctCACCAGAGTCCGATGAACTCGTGGATATTATTTTTTTAGGTGTCCGTGTCCAGTATGGGGGAAGTTTGAGGTAGGTTTGTGAGTCAGTGCTAACTAGATGGAATAGATGAATCCACTCATTTTGAAGGGGTAATCTTACATACACTATAAATACAAAATGATGTTGCATGTCTTAACCCATATTCCCACTATTGATGAATAATATAATGATGTAGGTACTTCAACAGTTGTTCCATCCTCGAGCCCAACGTGCCcagttcaataaataaataaaggagaA
>XM_021593942.2
TCTTCAACAACAACACGGCTACTGATTCAACCACTTCGCTAGCTTGCAAGCAAACACAAAACCTGAACATTGAAGCTCTTTCGACCATTTCTGTTAATATGaatctcagtgttttaaacaCAATTCTGTTTACATATACACTCCTTAACTTACATGCAATTTGCTTGTTTACTTAAATAAGCATATTTGTTAAATTCGTACTGAGTTTAGCACTAGGCTAgttgctaatgctaactagctagctaatatgaGTTCACTAAGCTACTGCCCCCCTGCTAAAGAAGAGGATGTCtactggacggagaaagaagctctggggCTGAACATTATTGTAAAACAAGAAGAggaggatattacagtgaaaggagaggaagaagcttTCAGAATAAAACAGGAGGAAGAAGAGGCTGTTATagggaaagaagagaaggaaccttttggagaggaagaggggatagaggctgtcacagaggaagaggaggatgtagaaGCTTTCAGAATGATAAAGGAGGAAGAGGCCATAACATTGAAAGAAGAGAAGGAACCTTTTGGagtaaaagaggaagaggaggctatctcaataaaagaggaagaggaggctatgACAGAGGAGGATGAaaatggagaggaggaagagactgAAGATCCTGttaacaccaCAGGGGAGAGACCAGACACAGACTCTCACTGTGACAGCTTGAAGAGTGCTTCAGGGGAACCAGACCCAGAGACGTCCAAACCAGAAAGACGACgacactgctctcagtgtggaaagagttttagctGGTTTGGGAacctgaaacgacatgagaggacacacacaaagGAGAGACCCTACCAATGCATTCAGTGTGGAAAGAATTTTAATTCATCAGAATATatgaaaaaacatgaaaaaatacactctaagccttaccactgctcccagtgtgaaaGAAGTTTTACCCAACGGGGggacctgaaatcacatgagaggacacacacaggagagaagccttaccactgctcacaGTGTGAAAGGAATTTTTTCTCATCGGGGTCCTTGAAAAGACATGAGGGGACACACTCTGTGGAAAAACCTTTCCACTGTTCTCATTGTGAAAAGAGTTTTAGGAATTTATGGAACCTGAAAGAACATGAGCAAAGACACACAATGGAGAAGCCTTTCCAATGCTCCCACTGTGGAATTAAATTTACATGGTTTCAACAACTTAAAGAGCATGAAAGAATCCACATTGTAGAGAAAAGTTATCAGTGCCTCCGGTGTGGAAAGATATTTATGCAGTTAGGGCACCTGAAAGTCcatgaggtaacacacacaggggagaagccataccaATGCTCCGAGTGTGGAAAGAGATATAGCACCTCACATGGACTTAAAATTCATCAGAAAACACACATTGTGCTCCCACAATTGTCTCATATTTTTGACTgagaatgtgtttttgtttatgcTATACATGAAATCTAATTATAGAAAGTGGActcaaaaatacatttctatgatttatttattttattttgaaatatAAATTAAATATGGAGTGAGTAAGTGCATGGCTTTCCCAGATTTCTATGACgtataattaattacaatatgagtgaaatcaTTTTCCCAAAAAATGGTAATTAAGTACATTAAAAAAGgtagcttttctgtgttggaacgGTGTGCATATCCAGACTACAGAATGTTGTGGGCGTATACAagtcattaaagggatactttgtgaTTTTGGCaacgaggccctttatctacctCACCAGAGTCCGATGAACTCGTGGATATTATTTTTTTAGGTGTCCGTGTCCAGTATGGGGGAAGTTTGAGGTAGGTTTGTGAGTCAGTGCTAACTAGATGGAATAGATGAATCCACTCATTTTGAAGGGGTAATCTTACATACACTATAAATACAAAATGATGTTGCATGTCTTAACCCATATTCCCACTATTGATGAATAATATAATGATGTAGGTACTTCAACAGTTGTTCCATCCTCGAGCCCAACGTGCCcagttcaataaataaataaaggagaA
>XM_021593943.2
TCTTCAACAACAACACGGCTACTGATTCAACCACTTCGCTAGCTTGCAAGCAAACACAAAACCTGAACATTGAAGCTCTTTCGACCATTTCTGTTAATATGaatctcagtgttttaaacaCAATTCTGTTTACATATACACTCCTTAACTTACATGCAATTTGCTTGTTTACTTAAATAAGCATATTTGTTAAATTCGTACTGAGTTTAGCACTAGGCTAgttgctaatgctaactagctagctaatatgaGTTCACTAAGCTACTGCCCCCCTGCTAAAGAAGAGGATGTCtactggacggagaaagaagctctggggCTGAACATTATTGTAAAACAAGAAGAggaggatattacagtgaaaggagaggaagaagcttTCAGAATAAAACAGGAGGAAGAAGAGGCTGTTATagggaaagaagagaaggaaccttttggagaggaagaggggatagaggctgtcacagaggaagaggaggatgtagaaGCTTTCAGAATGATAAAGGAGGAAGAGGCCATAACATTGAAAGAAGAGAAGGAACCTTTTGGagtaaaagaggaagaggaggctatctcaataaaagaggaagaggaggctatgACAGAGGAGGATGAaaatggagaggaggaagagactgAAGATCCTGttaacaccaGGGAGAGACCAGACACAGACTCTCACTGTGACAGCTTGAAGAGTGCTTCAGGGGAACCAGACCCAGAGACGTCCAAACCAGAAAGACGACgacactgctctcagtgtggaaagagttttagctGGTTTGGGAacctgaaacgacatgagaggacacacacaaagGAGAGACCCTACCAATGCATTCAGTGTGGAAAGAATTTTAATTCATCAGAATATatgaaaaaacatgaaaaaatacactctaagccttaccactgctcccagtgtgaaaGAAGTTTTACCCAACGGGGggacctgaaatcacatgagaggacacacacaggagagaagccttaccactgctcacaGTGTGAAAGGAATTTTTTCTCATCGGGGTCCTTGAAAAGACATGAGGGGACACACTCTGTGGAAAAACCTTTCCACTGTTCTCATTGTGAAAAGAGTTTTAGGAATTTATGGAACCTGAAAGAACATGAGCAAAGACACACAATGGAGAAGCCTTTCCAATGCTCCCACTGTGGAATTAAATTTACATGGTTTCAACAACTTAAAGAGCATGAAAGAATCCACATTGTAGAGAAAAGTTATCAGTGCCTCCGGTGTGGAAAGATATTTATGCAGTTAGGGCACCTGAAAGTCcatgaggtaacacacacaggggagaagccataccaATGCTCCGAGTGTGGAAAGAGATATAGCACCTCACATGGACTTAAAATTCATCAGAAAACACACATTGTGCTCCCACAATTGTCTCATATTTTTGACTgagaatgtgtttttgtttatgcTATACATGAAATCTAATTATAGAAAGTGGActcaaaaatacatttctatgatttatttattttattttgaaatatAAATTAAATATGGAGTGAGTAAGTGCATGGCTTTCCCAGATTTCTATGACgtataattaattacaatatgagtgaaatcaTTTTCCCAAAAAATGGTAATTAAGTACATTAAAAAAGgtagcttttctgtgttggaacgGTGTGCATATCCAGACTACAGAATGTTGTGGGCGTATACAagtcattaaagggatactttgtgaTTTTGGCaacgaggccctttatctacctCACCAGAGTCCGATGAACTCGTGGATATTATTTTTTTAGGTGTCCGTGTCCAGTATGGGGGAAGTTTGAGGTAGGTTTGTGAGTCAGTGCTAACTAGATGGAATAGATGAATCCACTCATTTTGAAGGGGTAATCTTACATACACTATAAATACAAAATGATGTTGCATGTCTTAACCCATATTCCCACTATTGATGAATAATATAATGATGTAGGTACTTCAACAGTTGTTCCATCCTCGAGCCCAACGTGCCcagttcaataaataaataaaggagaA

Function

NR:

description
zinc finger protein 664-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472149.2 False 1731 mRNA 0.39 2 6636106 6660778
XR_005036760.1 False 1727 mRNA 0.39 2 6636107 6660778
XM_021593942.2 False 2044 mRNA 0.40 2 6639422 6660778
XM_021593943.2 True 2041 mRNA 0.40 2 6639422 6660778

Neighbor

gene id symbol gene type direction distance location
LOC110514652 NA coding upstream 4060 6621171 ~ 6632046 (+)
LOC110511216 LOC106564015 coding upstream 40870 6586931 ~ 6595236 (+)
LOC118940005 LOC106593103 coding upstream 57224 6523504 ~ 6578882 (+)
LOC118940019 NA coding upstream 120543 6514024 ~ 6515563 (+)
LOC118940067 NA coding upstream 167543 6449002 ~ 6468563 (+)
LOC118940246 NA coding downstream 705158 7365617 ~ 7381649 (+)
LOC110485353 LOC106596877 coding downstream 876513 7537291 ~ 7543177 (+)
LOC110485355 LOC106593569 coding downstream 885569 7546347 ~ 7561297 (+)
LOC110487504 LOC106593600 coding downstream 905372 7566150 ~ 7599621 (+)
LOC110513544 LOC106564138 coding downstream 1022924 7683702 ~ 7856746 (+)
G1416405 NA non-coding upstream 22804 6605003 ~ 6613302 (+)
G1416394 NA non-coding upstream 68723 6566940 ~ 6567383 (+)
G1416346 NA non-coding upstream 297577 6337839 ~ 6338529 (+)
G1416342 NA non-coding upstream 306416 6328428 ~ 6329690 (+)
G1416338 NA non-coding upstream 334059 6301763 ~ 6302047 (+)
G1416429 NA non-coding downstream 17004 6677782 ~ 6683556 (+)
G1416439 NA non-coding downstream 44344 6705122 ~ 6706588 (+)
G1416451 NA non-coding downstream 58793 6719571 ~ 6720681 (+)
G1416453 NA non-coding downstream 64137 6724915 ~ 6754655 (+)
G1416440 NA non-coding downstream 80564 6741342 ~ 6803462 (+)
G1416180 LOC106594343 other upstream 418853 6216219 ~ 6217253 (+)
G1416304 NA other upstream 466559 6168395 ~ 6169547 (+)
LOC110493338 LOC106590982 other upstream 570649 6056654 ~ 6066070 (+)
G1415943 NA other upstream 1466533 5168936 ~ 5169573 (+)
G1416452 NA other downstream 59009 6719787 ~ 6720394 (+)
G1416462 NA other downstream 92024 6752802 ~ 6769590 (+)
G1416559 NA other downstream 667277 7328055 ~ 7334299 (+)
G1417359 LOC106594003 other downstream 941977 7602755 ~ 7606668 (+)
G1417508 NA other downstream 1037149 7697927 ~ 7698422 (+)

Expression


Co-expression Network