LOC118940231


Basic Information

Item Value
gene id LOC118940231
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 6646607 ~ 6648168 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036763.1
AAATAATCACATACCCAAGAATATTTATAtattaaaaaaagaaaagtgtGCACTCTGAACGACGTCGTAAGACAACAGGCAGCAGTCCCAGGACAGATAACAGAGTATGTGAAGCCCTCCTAATGGATATTTCGGGAGCTGAGGGGGACaacgattttttattttttttattttgtattttattttaggtATGATGGACATCGGACACATAGGGTGACTTGGATGCATTAGGGACTCTGAACGATATCGGAGGAACCGATGAAACAGACAGTATTCGGTCTTTTTGTATGAAACGTTTTTCCAAACACTCCAAGAACAGAGAATTTAAACGTCCCGACAACAACCCAGGGAACCACCACCCCCACACAACATAGTCCAGACCCCAACAACAAAAGCACAACGGTGGCCCAAGTGCATTGCGCAGAATCACCAGAGGTATTAATTCTAGGCATTTACatgtatgtttttaaaaatgAAGACTATTTATACaatgaaacaatgtttttttattcacactgTTTGTAAACAATAACTTTTGCCCTCTTAGGGTCTACTTGACCTGCTTATTGATTAGAAAGTATGATTAGAAACCAAGGCTGTGGAATATATTCGCTCTCACAGGCTATGAAAAAGACAAAAGCTAGGACATTGACTCCGGAGTGTTGAACTTATGCCCACTCTACAACAACCCCGGTTGTTATATGACCCCTGAGGATCATCTACGAACGTTGGAACATCTACAACTATTGAAGATGCAAAAAGGGGTTTTCAGAAACACATTTGGTTTACAGATATGTATTATTATAAAAATAATATAACATTATTATCATAATCTAAAACACTTTAAAGGATCTCTAATTCAAACATgcaaggatatatatatatatatatatatgatacgATTAACCACTTTAAAACTGTTGCTGCAATATCACTTCTCAATGTGTGTACATTTCAAGGTTTCAACAACAATAAACAAACCAGCTCAATAATGTTTCTCAGACTTACAAACTGTTGAGTTTTCCTAGTTAGTAAAGAAACAACCACTAAGCCAAAACCCCAAAAGTTGTAATATAATCTGTATACAAGTCATTCTATACAGAAAACAGGTACATTTTGATTGATCAAGAATTCCCAATAggtttgtgtcacgccctgaccatagtttgctatgtatgtttataggttttgtttggtatgggtgtgatatgagtgggcattctatgatgtatgtctagtttgtctttTTTCAGTGTTTGGCCGGATATTGTTTTCAATCAGAGGCctgtgttagtcgttgtctctgattgggaaccatatttaggtagcctgtgttgTCATtgttgggtgattgtctatgttaggtgcttgtgtcagcacattgggtatatagcgtcacggtcgttgTTCATTTATTGGCTTGTTCAGTTTACTTTGTGTTTTCGTCATCCATTAAAacgatgcattcacacca
>XR_005036764.1
AATAATCACATACCCAAGAATATTTATAtattaaaaaaagaaaagtgtGCACTCTGAACGACGTCGTAAGACAACAGGCAGCAGTCCCAGGACAGATAACAGAGTATGTGAAGCCCTCCTAATGGATATTTCGGGAGCTGAgtATGATGGACATCGGACACATAGGGTGACTTGGATGCATTAGGGACTCTGAACGATATCGGAGGAACCGATGAAACAGACAGTATTCGGTCTTTTTGTATGAAACGTTTTTCCAAACACTCCAAGAACAGAGAATTTAAACGTCCCGACAACAACCCAGGGAACCACCACCCCCACACAACATAGTCCAGACCCCAACAACAAAAGCACAACGGTGGCCCAAGTGCATTGCGCAGAATCACCAGAGGTATTAATTCTAGGCATTTACatgtatgtttttaaaaatgAAGACTATTTATACaatgaaacaatgtttttttattcacactgTTTGTAAACAATAACTTTTGCCCTCTTAGGGTCTACTTGACCTGCTTATTGATTAGAAAGTATGATTAGAAACCAAGGCTGTGGAATATATTCGCTCTCACAGGCTATGAAAAAGACAAAAGCTAGGACATTGACTCCGGAGTGTTGAACTTATGCCCACTCTACAACAACCCCGGTTGTTATATGACCCCTGAGGATCATCTACGAACGTTGGAACATCTACAACTATTGAAGATGCAAAAAGGGGTTTTCAGAAACACATTTGGTTTACAGATATGTATTATTATAAAAATAATATAACATTATTATCATAATCTAAAACACTTTAAAGGATCTCTAATTCAAACATgcaaggatatatatatatatatatatatgatacgATTAACCACTTTAAAACTGTTGCTGCAATATCACTTCTCAATGTGTGTACATTTCAAGGTTTCAACAACAATAAACAAACCAGCTCAATAATGTTTCTCAGACTTACAAACTGTTGAGTTTTCCTAGTTAGTAAAGAAACAACCACTAAGCCAAAACCCCAAAAGTTGTAATATAATCTGTATACAAGTCATTCTATACAGAAAACAGGTACATTTTGATTGATCAAGAATTCCCAATAggtttgtgtcacgccctgaccatagtttgctatgtatgtttataggttttgtttggtatgggtgtgatatgagtgggcattctatgatgtatgtctagtttgtctttTTTCAGTGTTTGGCCGGATATTGTTTTCAATCAGAGGCctgtgttagtcgttgtctctgattgggaaccatatttaggtagcctgtgttgTCATtgttgggtgattgtctatgttaggtgcttgtgtcagcacattgggtatatagcgtcacggtcgttgTTCATTTATTGGCTTGTTCAGTTTACTTTGTGTTTTCGTCATCCATTAAAacgatgcattcacacca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036763.1 False 1474 mRNA 0.37 2 6646607 6648168
XR_005036764.1 True 1427 mRNA 0.37 2 6646608 6648168

Neighbor

gene id symbol gene type direction distance location
LOC110514652 NA coding upstream 14561 6621171 ~ 6632046 (+)
LOC110511216 LOC106564015 coding upstream 51371 6586931 ~ 6595236 (+)
LOC118940005 LOC106593103 coding upstream 67725 6523504 ~ 6578882 (+)
LOC118940019 NA coding upstream 131044 6514024 ~ 6515563 (+)
LOC118940067 NA coding upstream 178044 6449002 ~ 6468563 (+)
LOC118940233 NA coding downstream 6300 6654467 ~ 6656974 (+)
LOC118940246 NA coding downstream 717768 7365617 ~ 7381649 (+)
LOC110485353 LOC106596877 coding downstream 889123 7537291 ~ 7543177 (+)
LOC110485355 LOC106593569 coding downstream 898179 7546347 ~ 7561297 (+)
LOC110487504 LOC106593600 coding downstream 917982 7566150 ~ 7599621 (+)
G1416405 NA non-coding upstream 33305 6605003 ~ 6613302 (+)
G1416394 NA non-coding upstream 79224 6566940 ~ 6567383 (+)
G1416346 NA non-coding upstream 308078 6337839 ~ 6338529 (+)
G1416342 NA non-coding upstream 316917 6328428 ~ 6329690 (+)
G1416338 NA non-coding upstream 344560 6301763 ~ 6302047 (+)
G1416429 NA non-coding downstream 29614 6677782 ~ 6683556 (+)
G1416439 NA non-coding downstream 56954 6705122 ~ 6706588 (+)
G1416451 NA non-coding downstream 71403 6719571 ~ 6720681 (+)
G1416453 NA non-coding downstream 76747 6724915 ~ 6754655 (+)
G1416180 LOC106594343 other upstream 429354 6216219 ~ 6217253 (+)
G1416304 NA other upstream 477060 6168395 ~ 6169547 (+)
LOC110493338 LOC106590982 other upstream 581150 6056654 ~ 6066070 (+)
G1415943 NA other upstream 1477034 5168936 ~ 5169573 (+)
G1416452 NA other downstream 71619 6719787 ~ 6720394 (+)
G1416462 NA other downstream 104634 6752802 ~ 6769590 (+)
G1416559 NA other downstream 679887 7328055 ~ 7334299 (+)
G1417359 LOC106594003 other downstream 954587 7602755 ~ 7606668 (+)
G1417508 NA other downstream 1049759 7697927 ~ 7698422 (+)

Expression


Co-expression Network