LOC118940071 (LOC106593103)


Basic Information

Item Value
gene id LOC118940071
gene name LOC106593103
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 6852581 ~ 6965513 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948295.1
atgagctcactaaACTACTCCTCCCTTGCTAATGAAGAGGTGGTCGGCTctgtgagaggaggagcagagaagaaaggagcagatttgacacatcaaagagaaagaccagactcagaggaaccagagccagggacgtccaaaccagcaagacgacaccagtgctcccactgtggaaagggttgtaACCGGTTATGGGACGTGAAACAACATGagaaaatacacacaggggagaagacttaccactgctcccagtgtggaaagagttttaaccagaaagcacacctgaaagctcatgagagaatacacacaggggagaagccttaccactgctcccagtgtggaaagtgtttcaaccggcCAGGGCATCTGAAActgcacgagagaatacacacaggggagaagccttatcactgctcccGGTGTGGAAATAGTTTTAACAATTTAGGGAAACTGAaacggcatgagagaatacacacagggaagaagccttatcactgctcccagtgtggaaagagttttatcgGTTTAGGGAagctgaaacgacatgagagaatacacacaggggagaagccttaccacttctcccagtgtggaaagtgttttaaTGAGAACTCAAACCTGAAAgttcatgagagaatacacacaggggagaagccttaccactgctcccagtgtggaaagagttttaacaatTTAGGGaccctgaaacaacatgagagaatacacacaggggagaagccttgccattgctcccagtgtggaaagagttttaacaatTTAGGGAACCtaaaacaacatgagagaatacacacaggggagaggccttaccactgctcccagtgtggaaagtgtttcatccGGTCAAAGGAGctgaaaagacatgagagaatacacacaggagagaagccttatcactgctcccagtgtggaaagagttttaacaatTTAGGGAACCTGAAACATCAtgagaaaatacacacaggtgagaagccttaccactgctcccagtgtggaaagtgtttcaaccggtCAGGGGGGCTGAAacgacacgagagaatacacacaggggagaagcctttccactcctcccagggtgcaaagcttttgcccatttaggaagcctgaaagaacacATGAGACTGCACACAGAGGAGAATGCTTACAAAAGGCCAGACTGTGAGAAAACATATTACTCAGAACAGTCACTTAAACGTCTttagagaatccacacaggagagagaaatgacttctcttagcgtgtatattgatatttcacatcacattgacttaaaattcatcagagaacacacacagtgcTCCCGTTGTCTTATATTGTACACTGACAATGTGTTTACCTGTTTTTACCATATTAAATtgtttcttccaattattgataaacatatacctgttaagaaactgactgttagaactgttaaggctccatggattgatgaggaatttaaaaactgtatggtcattggtaaaaataggaaagagttttaaccagaAAGGACACCTGAACCAACATGggaaaatacacacaggggagaagccttaacACTGCTTAACACTGCgatttggttgggttgtgtatcggaggacgcatgactttgaccttcgtctctcccgagcccgtacgggagttgtagcgatgagacaagattgtagctactaacaattagataccacgatattggggagaaaaagggaggtaaaattaaacattttaaaaattaaaaCACATGAGactccacacaggggagaagctttaccactgctcccagtgtgcaaAGCGtttgcccatttaggaagcctgaaagaatACATGAGAAGGCTTACTAAATACTCAGACTGTGGGAAAACATATTACTCATCACAGTCACTTCAACGTCATAAGAGAATCCACACAAAAGAGAAGAATTACTTGTaatattgatatttcacatcacattgacttaaaatgaatcagagaacatacacagtgctcctgttgtcttatattgttgactaAGAATGTGTTTACTTGTTTTTACCAGATGGAAGTGAATTGTACAAAGTATACTTAAACATATAGTTGTTTGTTTCTATTAGAAAACATGAATTGAATATGGAGTCTGTCAGTTTGAATATAGAGTAGATCAGAT
>TU1620546
cttcaggaacaacaaggcgccaactctttcaaccacctcgatagcttgctagacaacataaaaactgaaagattgacgTTTTAGACCATGTTAATGTACATTAGCTAATCTCAGTGTTTTCAACAAGTTTCGGTTGACGTATCAACTGGTTCAATTTGCAAACGTGTTAAAGATTGATActgagcctagcactaggctagacgctaatgctagctagctagataacatccctgaccatgagctcactaaACTACTCCTCCCTTGCTAATGAAGAGGGGGTCTGCTGTTTGGAGAAAGAatctttcagaatgaaaaaggaggaagaggaggctgttatagtgaaagaagagaaagaaccgtttagagaggaagaggatgctgtctcaataaaggtgaaggaggaagacgttttgggggtgaaagaggaagagaccGAATATgagattaacaccagagagagacatgactatggtggatcctctggggagcctcaacatcctgatgctgacgaggaagagaagagtctctccagatcagaacaccagatggacaacgctagcccttcctccctcccggagtccctGTATCATgcctctcctggtagcaccttactgctgggtatgaagaggttgtctgtgcagCTGGAtgactgcaggaaaacaatggggctgagtggaactgtgagaggaggagcagagaagaaaggagcagatttgacacatcaaagagaaagaccagactcagaggaaccagagccagggacgtccaaaccagcaagacgacaccagtgctcccactgtggaaagggttgtaACCGGTTATGGGACGTGAAACAACATGagaaaatacacacaggggagaagacttaccactgctcccagtgtggaaagagttttaaccagaaagcaca

Function

NR:

description
PREDICTED: zinc finger protein 501-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948295.1 False 2144 mRNA 0.42 3 6852581 6861329
TU1620546 True 910 TUCP 0.47 4 6854444 6965513
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Neighbor

gene id symbol gene type direction distance location
LOC118940234 NA coding downstream 8161 6822618 ~ 6844420 (-)
LOC118940238 LOC106608452 coding downstream 41743 6803708 ~ 6810838 (-)
LOC118940239 LOC106608471 coding downstream 54411 6796847 ~ 6798170 (-)
LOC118940070 NA coding downstream 68908 6741383 ~ 6783673 (-)
LOC110519350 NA coding downstream 74247 6771911 ~ 6778334 (-)
LOC118940236 NA coding upstream 7843 6869172 ~ 6870932 (-)
LOC118940243 LOC106608452 coding upstream 25370 6886699 ~ 6893399 (-)
LOC118940241 NA coding upstream 44663 6905992 ~ 6924555 (-)
LOC118940072 NA coding upstream 75312 6936641 ~ 6938612 (-)
LOC110519879 NA coding upstream 85121 6946450 ~ 6964689 (-)
G1417185 NA non-coding downstream 13164 6826852 ~ 6839417 (-)
G1417153 NA non-coding downstream 88280 6705122 ~ 6764301 (-)
G1417143 NA non-coding downstream 169000 6683088 ~ 6683581 (-)
G1417123 LOC106595205 non-coding downstream 221921 6629221 ~ 6630660 (-)
G1417117 NA non-coding downstream 232470 6617987 ~ 6620111 (-)
LOC118940242 NA non-coding upstream 156575 7017904 ~ 7083762 (-)
G1417224 NA non-coding upstream 174082 7035411 ~ 7036059 (-)
G1417242 NA non-coding upstream 370077 7231406 ~ 7265598 (-)
G1417259 NA non-coding upstream 456480 7317809 ~ 7320070 (-)
G1417264 NA non-coding upstream 466728 7328057 ~ 7329207 (-)
G1417032 NA other downstream 86455 6735028 ~ 6766126 (-)
LOC110516679 LOC106591074 other downstream 665992 6177918 ~ 6186909 (-)
G1416942 LOC106591698 other downstream 760551 6091441 ~ 6092030 (-)
G1416889 NA other downstream 851994 5999311 ~ 6000587 (-)
G1416869 NA other downstream 948054 5903158 ~ 5904527 (-)
G1417206 NA other upstream 55979 6917308 ~ 6918256 (-)
LOC118940245 LOC106564023 other upstream 348860 7209499 ~ 7245761 (-)
LOC110515395 LOC106595531 other upstream 658814 7519528 ~ 7537366 (-)
G1417422 LOC106596877 other upstream 679362 7540691 ~ 7543176 (-)
LOC110491210 LOC106595452 other upstream 1070333 7888634 ~ 8004269 (-)
LOC118940073 NA coding upstream 5060 6970573 ~ 6990898 (-)
LOC118940074 NA coding upstream 38558 7004071 ~ 7054108 (-)
LOC118940049 NA coding upstream 103491 7069004 ~ 7075301 (-)
G1417810 NA other upstream 1049916 8015429 ~ 8024309 (-)

Expression

LOC118940071(LOC106593103) Expression in all Baseline Samples

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LOC118940071(LOC106593103) Expression in each Bioproject

Bar chart with 21 bars.
LOC118940071(LOC106593103) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network