XLOC_033170 (raly)



Basic Information


Item Value
gene id XLOC_033170
gene name raly
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 50021410 ~ 50204262 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00064444
TAAAGTTTTAATTCTGTTCTCCCTCAAACAAAAAAGTTATGGACTCACcttatgttattaaaaaaaacagaaacaatcacAGAAATTCAACaagtataattaaaatattagaaaCCATTAACATTTAGGCTAACAATTAAAGCCagtaaattttaatgtttttttctagtGTGCTTTGGAGCAGATTCCATTAGGATTTTGCAGATATAACGTGACACCAATAGAAAGAAACAAATTACCAGTAGAAACCCATGGGAACCGTTACAGTTTCCATTCAAACCAATACAACTCCCATTATAGCATTAAACCCATTACCAATTCAGTGAGGGTTTCTATTGTTTATTTCACCCGGAACGACCTCTTAGTTTTATGTGAGTAAATATCACTTCAGTGCTATTCTTCAAAACACTCCCCCAATTACTTACATATAAAACTTTGTAATTAGCCAACGACCGAGTTTAATTGCTTACTTAATACCTTTATGTAGGCTAGAGATATCACGCGTCTCCCCCTGCGCAGTCGCAATGGTTTGCTCCACACCAGCGCTGTTTATACTGTTGAAACGCAGCTTTCCACAGTCACTGCACCGCTGACAGCTCCTCTCGCTCACTCTCTTCTTGTTGCTCTTTCCACATTTTTGCTCTCTGACATTTTCTCCGGATCCCTCACACACTCCAGGTCACAAGCGCTGGGACCACGCAGCACATCCACACCCATCCCCCGGCCACAGAAGAGATCTGAGAGATTGGAGTTCACATCTAATCCAGGATGTCACTGAAAGTCCAGACGAGCAACATCACCAACAAAAATGACCCCAAATCTATCAACTCACGTGTGTTTATCGGCAATCTGAACACAGCAGTGGTGAAGAAGAGCGACGTCGAGACCATCTTCTCCAAATACGGCCGCGTGTTGGGCTGCTCGGTCCATAAAGGCTACGCTTTTGTTCAGTATGCTAACGAGAGACACGCGCGTGGAGCCGTCATTGGAGAAAATGGACGCGTGCTTGCTGGACAAACCCTCGATATTAACATGGCAGGTGAACCAAAACCCAACAGGCCTAAAGGACTAAAGAGATCTGCAGCGACGTTATACAGTGGTTATGATTTTGACTATGATTACTACAGAGATGACTTCTATGACAGATTGTTCGAGTATCGAGGCAGAGTTTCTCCGGTGCCAAGAGCGGTCCCAGTAAAGCGCCCTCGTGTGGCAGTGCCAGTCGTCCGCAGGGTGAAGTCATTACCCGTCAAACTCCTGACCAGATCCGCTATCCTTCCCAACAGCTCTGTCAAACACAAGCTGAAATCCACCGAGCTGCAGGCTATCAAATCAGAACTGACGCAGATTAAGTCCAACATCGACGCACTGCTGGGGCGTCTTGACCAGATCACAGAGGACAAATACTGCAGCACAGAGTTGCAGAAGGCGGAGGACCTGAAGAGTGAAGCGTCTCAGGACGAGTCGGGCTCCGAATCGGAGGATCTGCAGCACAGCGACGTGGAGGAGGGAGAAGACCACACACACGAGGAGTGTGACGACGACATGGAAAACAATCACATATCTGAAATGGATCCCATTCTCCAATAAAAGGCAAGAACTCAGAGCTGGGACAGTGGATTCCTGGATCACGCAGGGAGTTGGAAAACACTGTCGACTGGAAACTTTTTTAATACCACAGACTCAGCGGGAAGACACTGAAACCAACAGGCGCCGTCAAAACTCCAGCATCAGCTGTCAATGAGACGGACAACCAAACTAGTTGCTTGCTAGGAGATTGTGTGGGTGACGTCCTACGAAACCAGGAATCCATAACAAAACGGTCACAGTTCCTGAGAGCAACAGCTTCAACACACACAACAACTCAAGTGGATCCATTTCAGACAGTCTGCATTCACAGTCAATCAACATTGCATCTTTTCTACACATTTGAGGCGCCTCATATATGTAAATACCCTCGTTCCTGTTTCTGTTCCTCCTTCCTTCCTGTCTGTTTGTGCTTTTCCAGAAatgttttttggttttatttatacgCCAGTCGGAAATAAGAAGGGTTGGCTATTTTTAATTACATGTGCATATTTATTTCTGCTTGCACTTTCGAGACTGCAAGAGATATTTACAGATGTAAATAAAACTATGACTTGTGAAGCATCGTTCTCTGTGTTTAAATGAAGTTTAGACTAATCCTTGGTGCTTTGTATAATACTTTGCTTTTTGTAAGACGAGCGATTTATTCTGACTGTGTCGGGTTTGccactaagaggattatagaagATGCTACTTCTTGAAATATGAATAACTCTTGTTGAGCTCTGGACGAGAGAGACAGTTGCTATGTTTCCATCTTAAAATgccaattaaatttatgcgcaaaacagacatattgcataaaagacgtgcgaataaagcagcgtttgcAACCAACGACTCAAAGAGagtaaaatcgtcacttcctgattaactggcgccaaatactaacagtaaaaacagaattttctgcaataggagaagctgcgtcaatgttctctttatttaataaataactttcaCCTCAGAAGAAGATGGCAACACGCTAGACGAAAGCGAAGAAAGCTGTTGGGCCCATAATGGTTTTTCTGGGGGACCAAAGAAGCAGCCCTGTTGATTGTAAGGAGTATGAATGGATCTTGGATGTACCACATCTggcattttgtcatgatcacataaCCTACCCGTGTCAGTTGTGCTGCTTCACTTACGTTTATGAATTATCTTgtagggcatcatgggatagcgcagcgtgcatcgGATGCGCTCTTCAGAATCTCGTTGGAAGCAGTAGATCATCCAGGTACTTTGcgcatactgttttttgaattctGTCTGCGTCTGAAATCGCATATTCCAAA
>TCONS_00064445
ACTGCACCGCTGACAGCTCCTCTCGCTCACTCTCTTCTTGTTGCTCTTTCCACATTTTTGCTCTCTGACATTTTCTCCGGATCCCTCACACACTCCAGGTCACAAGCGCTGGGACCACGCAGCACATCCACACCCATCCCCCGGCCACAGAAGAGATCTGAGAGATTGGAGTTCACATCTAATCCAGGATGTCACTGAAAGTCCAGACGAGCAACATCACCAACAAAAATGACCCCAAATCTATCAACTCACGTGTGTTTATCGGCAATCTGAACACAGCAGTGGTGAAGAAGAGCGACGTCGAGACCATCTTCTCCAAATACGGCCGCGTGTTGGGCTGCTCGGTCCATAAAGGCTACGCTTTTGTTCAGTATGCTAACGAGAGACACGCGCGTGGAGCCGTCATTGGAGAAAATGGACGCGTGCTTGCTGGACAAACCCTCGATATTAACATGGCAGGTGAACCAAAACCCAACAGGCCTAAAGGACTAAAGAGATCTGCAGCGACGTTATACAGTGGTTATGATTTTGACTATGATTACTACAGAGATGACTTCTATGACAGATTGTTCGAGTATCGAGGCAGAGTTTCTCCGGTGCCAAGAGCGGTCCCAGTAAAGCGCCCTCGTGTGGCAGTGCCAGTCGTCCGCAGGGTGAAGTCATTACCCGTCAAACTCCTGACCAGATCCGCTATCCTTCCCAACAGCTCTGTCAAACACAAGCTGAAATCCACCGAGCTGCAGGCTATCAAATCAGAACTGACGCAGATTAAGTCCAACATCGACGCACTGCTGGGGCGTCTTGACCAGATCACAGAGGACAAATACTGCAGCACAGAGTTGCAGAAGGCGGAGGACCTGAAGAGTGAAGCGTCTCAGGACGAGTCGGGCTCCGAATCGGAGGATCTGCAGCACAGCGACGTGGAGGAGGGAGAAGACCACACACACGAGGAGTGTGACGACGACATGGAAAACAATCACATATCTGAAATGGATCCCATTCTCCAATAAAAGCAGGGAGTTGGAAAACACTGTCGACTGGAAACTTTTTTAATACCACAGACTCAGCGGGAAGACACTGAAACCAACAGGCGCCGTCAAAACTCCAGCATCAGCTGTCAATGAGACGGACAACCAAACTAGTTGCTTGCTAGGAGATTGTGTGGGTGACGTCCTACGAAACCAGGAATCCATAACAAAACGGTCACAGTTCCTGAGAGCAACAGCTTCAACACACACAACAACTCAAGTGGATCCATTTCAGACAGTCTGCATTCACAGTCAATCAACATTGCATCTTTTCTACACATTTGAGGCGCCTCATATATGTAAATACCCTCGTTCCTGTTTCTGTTCCTCCTTCCTTCCTGTCTGTTTGTGCTTTTCCAGAAatgttttttggttttatttatacgCCAGTCGGAAATAAGAAGGGTTGGCTATTTTTAATTACATGTGCATATTTATTTCTGCTTGCACTTTCGAGACTGCAAGAGATATTTACAGATGTAAATAAAACTATGACTTGTGAA
>TCONS_00064446
ACTGCACCGCTGACAGCTCCTCTCGCTCACTCTCTTCTTGTTGCTCTTTCCACATTTTTGCTCTCTGACATTTTCTCCGGATCCCTCACACACTCCAGGTCACAAGCGCTGGGACCACGCAGCACATCCACACCCATCCCCCGGCCACAGAAGAGATCTGAGAGATTGGAGTTCACATCTAATCCAGGATGTCACTGAAAGTCCAGACGAGCAACATCACCAACAAAAATGACCCCAAATCTATCAACTCACGTGTGTTTATCGGCAATCTGAACACAGCAGTGGTGAAGAAGAGCGACGTCGAGACCATCTTCTCCAAATACGGCCGCGTGTTGGGCTGCTCGGTCCATAAAGGCTACGCTTTTGTTCAGTATGCTAACGAGAGACACGCGCGTGGAGCCGTCATTGGAGAAAATGGACGCGTGCTTGCTGGACAAACCCTCGATATTAACATGGCAGGTGAACCAAAACCCAACAGGCCTAAAGGACTAAAGAGATCTGCAGCGACGTTATACAGATTGTTCGAGTATCGAGGCAGAGTTTCTCCGGTGCCAAGAGCGGTCCCAGTAAAGCGCCCTCGTGTGGCAGTGCCAGTCGTCCGCAGGGTGAAGTCATTACCCGTCAAACTCCTGACCAGATCCGCTATCCTTCCCAACAGCTCTGTCAAACACAAGCTGAAATCCACCGAGCTGCAGGCTATCAAATCAGAACTGACGCAGATTAAGTCCAACATCGACGCACTGCTGGGGCGTCTTGACCAGATCACAGAGGACAAATACTGCAGCACAGAGTTGCAGAAGGCGGAGGACCTGAAGAGTGAAGCGTCTCAGGACGAGTCGGGCTCCGAATCGGAGGATCTGCAGCACAGCGACGTGGAGGAGGGAGAAGACCACACACACGAGGAGTGTGACGACGACATGGAAAACAATCACATATCTGAAATGGATCCCATTCTCCAATAAAAGGCAAGAACTCAGAGCTGGGACAGTGGATTCCTGGATCACG

Function


symbol description
raly Predicted to enable RNA binding activity. Predicted to be active in nucleus. Is expressed in central nervous system; heart rudiment; and neurons. Orthologous to human RALY (RALY heterogeneous nuclear ribonucleoprotein).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-041010-127 Predicted to enable RNA binding activity. Predicted to be active in nucleus. Is expressed in central nervous system; heart rudiment; and neurons. Orthologous to human RALY (RALY heterogeneous nuclear ribonucleoprotein).

Ensembl:

ensembl_id ENSDARG00000059972

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00064444 False 2891 mRNA 0.44 10 50021410 50204262
TCONS_00064445 False 1531 mRNA 0.48 10 50022150 50203682
TCONS_00064446 True 1005 mRNA 0.52 8 50027209 50203682
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Neighbor


gene id symbol gene type direction distance location
XLOC_033169 asip1 coding downstream 38081 49975910 ~ 49983329 (-)
XLOC_033167 BX629346.2 coding downstream 95093 49918254 ~ 49926317 (-)
XLOC_033168 BX629346.1 coding downstream 99553 49919936 ~ 49921857 (-)
XLOC_033166 atp5f1e coding downstream 119270 49893488 ~ 49902140 (-)
XLOC_033165 gnas coding downstream 148390 49811831 ~ 49873020 (-)
XLOC_033172 NA coding upstream 155395 50359657 ~ 50380212 (-)
XLOC_033173 romo1 coding upstream 197358 50401620 ~ 50404732 (-)
XLOC_033174 NA coding upstream 253706 50457968 ~ 50505438 (-)
XLOC_033175 mtss1 coding upstream 376678 50580940 ~ 50685862 (-)
XLOC_033176 osgn1 coding upstream 491119 50695381 ~ 50704689 (-)
XLOC_033163 NA non-coding downstream 249771 49760355 ~ 49771639 (-)
XLOC_033155 BX569793.1 non-coding downstream 698878 49310908 ~ 49322532 (-)
XLOC_033152 NA non-coding downstream 917218 49100879 ~ 49104192 (-)
XLOC_033178 BX530017.2 non-coding upstream 538053 50742315 ~ 50747545 (-)
XLOC_033179 BX530017.1 non-coding upstream 550239 50754501 ~ 50756448 (-)
XLOC_033181 NA non-coding upstream 1324501 51528763 ~ 51541488 (-)

Expression


Expression of XLOC_033170(raly) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Expression of XLOC_033170(raly) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network