LOC110519879



Basic Information


Item Value
gene id LOC110519879
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 6946450 ~ 6964689 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036948298.1
aTGCATGCCTCTTctgtgagaggaggagcagagaagaaaggagcagatttgacacatcaaagagaaagaccagactcagaggaaccagagccagggacgtccaaaccagcaagacgacaccagtgctcccactgtggaaagggttgtaACCGGTTATGGGACGTGAAACAACATGagaaaatacacacaggggagaagacttaccactgctcccagtgtggaaagagttttaaccagaaagcacacctgaaagctcatgagagaatacacacaggggagaagccttaccactgctcccagtgtggaaagtgtttcaaccggcCAGGGCATCTGAAActgcacgagagaatacacacaggggagaagccttatcactgctcccGGTGTGGAAATAGTTTTAACGATTTAGGGAaactgaaacgacatgagagaatacacacatggaagaagccttatcactgctcccagtgtggaaagagttttattgGTTTAGGGAaactgaaacgacatgagagaatacacacaggggagaagccttaccactgctcccagtgtggaaagggttttaatgAGAAATCAAACCTGAAAGttcacgagagaatacacacaggggagaagccttgccactgctcccagtgtggaaagagttttaacaatTTAGGGAACCtaaaacaacatgagagaatacacacaggggagaggccttaccactgctcccagtgtggaaagtgtttcaaccggcCAGGGCATCTGAAActgcacgagagaatacacacaggggagaagccttatcactgctcccGGTGTGGAAATAGTTTTAACGATTTAGGGAaactgaaacgacatgagagaatacacacagggaagaagccttatcactgctcccagtgtggaaagagttttatcgGTTTAGGGAaactgaaacgacatgagagaatacacacaggggagaagccttaccactgctcccagtgtggaaagggttttaatgAGAAATCAAACCTGAAAGttcacgagagaatacacacaggggagaagccttaccactgctcccagtgtggaaagagttttaacaatTTAGGGACggacctgaaacaacatgagaaaatgcacacaggggagaagccttaccactgttcccaatgtggaaagtgtttcgtcTGTTCGGGggagctgaaacaacatgagagaatacacacaggagagaagccttaccactgctcccaatgtggaaagagtttcaaccagaaagcaaacctgaaagctcatgagagaatacacacaggagagaagccttaccactgctcccaatgtggaaggtgtttcaaccagtcgtgggcgctgaaacaacacgagagaatacacacaggagagaagccttaccactgttcccaatgtggaaagtgtttcgtcTGTTCGGGggagctgaaacaacatgagagaatacacacaggagagaagccttaccactgctcccaatgtggaaagagtttcaaccagaaagcaaacctgaaagctcatgagagaatacacacaggagagaagccttaccactgctcccaatgtggaaggtgtttcaaccagtcgtgggcgctgaaacaacacgagagaatacacacaggagagaagccttaccactgctcccaatgtggaaagtgtttcaaccagtcgagggagctgaaacaacatgagagaatacacacaggagagaagccttaccactgctcccaatgtggaaagtgtttcaaccagagagTAAACCTGGaagctcatgagagaatacacacaggagagaagccttaccactgctcccagtgtggaaagagtttcaaccggaaagcaaacctgaaagctcatgagagaatacacacaggagagaagccttaccactgctcccaatgtggaaagtgtttcaaccagtcgggggagctgaaacatcatgagagaatacacacaggagagaagccttaccactgctcccaatgtggaaagtgtctCAACCGGTCGGGGGAGCTGAAAGAACATGCGAGAATACACAcagagagaagccttaccactgctcccaatgtggaaagtgtttcatccATTCAGGGGatctga

Function


NR:

description
zinc finger protein 721-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036948298.1 True 2100 mRNA 0.48 5 6946450 6964689

Neighbor


gene id symbol gene type direction distance location
LOC118940072 NA coding downstream 7838 6936641 ~ 6938612 (-)
LOC118940241 NA coding downstream 21895 6905992 ~ 6924555 (-)
LOC118940243 LOC106608452 coding downstream 53051 6886699 ~ 6893399 (-)
LOC118940236 NA coding downstream 75518 6869172 ~ 6870932 (-)
LOC118940071 LOC106593103 coding downstream 85121 6852581 ~ 6965513 (-)
LOC118940073 NA coding upstream 5884 6970573 ~ 6990898 (-)
LOC118940074 NA coding upstream 39382 7004071 ~ 7054108 (-)
LOC118940242 NA coding upstream 89584 7017904 ~ 7083762 (-)
LOC118940049 NA coding upstream 104315 7069004 ~ 7075301 (-)
LOC118940245 LOC106564023 coding upstream 244810 7209499 ~ 7245761 (-)
G1417185 NA non-coding downstream 107033 6826852 ~ 6839417 (-)
G1417153 NA non-coding downstream 182149 6705122 ~ 6764301 (-)
G1417143 NA non-coding downstream 262869 6683088 ~ 6683581 (-)
G1417123 LOC106595205 non-coding downstream 315790 6629221 ~ 6630660 (-)
G1417117 NA non-coding downstream 326339 6617987 ~ 6620111 (-)
G1417224 NA non-coding upstream 70722 7035411 ~ 7036059 (-)
G1417242 NA non-coding upstream 266717 7231406 ~ 7265598 (-)
G1417259 NA non-coding upstream 353120 7317809 ~ 7320070 (-)
G1417264 NA non-coding upstream 363368 7328057 ~ 7329207 (-)
G1417206 NA other downstream 28194 6917308 ~ 6918256 (-)
G1417032 NA other downstream 180324 6735028 ~ 6766126 (-)
LOC110516679 LOC106591074 other downstream 759861 6177918 ~ 6186909 (-)
G1416942 LOC106591698 other downstream 854420 6091441 ~ 6092030 (-)
G1416889 NA other downstream 945863 5999311 ~ 6000587 (-)
LOC110515395 LOC106595531 other upstream 555454 7519528 ~ 7537366 (-)
G1417422 LOC106596877 other upstream 576002 7540691 ~ 7543176 (-)
LOC110491210 LOC106595452 other upstream 966973 7888634 ~ 8004269 (-)
G1417810 NA other upstream 1050740 8015429 ~ 8024309 (-)

Expression


LOC110519879 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC110519879 Expression in each Bioproject

Bar chart with 20 bars.
LOC110519879 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.

Co-expression Network