LOC110487504 (LOC106593600)


Basic Information

Item Value
gene id LOC110487504
gene name LOC106593600
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 7566150 ~ 7599621 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948745.1
GGCTTTTATTTTGTCGTAGCCATATTTTGATTGACGTCGTGTCAAAAACGTCACTACGCCGGAAGTGTTGGAAAGATTAAAATCCTCTTGAGTGACAGCGGCGGTTTGGTACATTGTATATTTTTTGTCTTTCTGTAGGGATGGAGGTGACACGAACAAATTTCAAAGACAGTTTAAGCACTGTGTACAGCGCAATAGAGGAAGCAGACTTTCTCGCAATCGATGGGGAATTTTCAGGTATTAGCGATGGGCCCAACGTCAGCGCACTGACTAACGGGTTGGACACGCCAGAGGAGCGCTACATGAAGCTAAAAAAGCATTCCATGGACTTCTTGCTGTTTCAGTTTGGACTGTGTACGTTCACATATGACCAGGCAGAGTCCAAGTACGTCATCAAGACTTTTAATTTTTATATATTCCCAAAGCCGTTCAACAGAACCTCCCCAGACACCAAGTTCATCTGCCAGAGTTCCAGCATTGACTTCCTGGCCAGTCAGGGTTTTGACTTCAACAAAGTGTTCCGTCACGGGATCCCGTACCTGAACCAGGAAGAGGAAGTGCAGCTGCGGGAGCAGTATGAGGAGAGGCGGAGTCAGAGTAACGGATCAGGAAACCCCTCCTACATCTCCCCCAACTCAAACAAAGGCCCCGGCAGCATCCCAGAGGAGCACAGGGAGTACATCGGGCGAGTGGTAGAGAAGGTGGAATCTCTGTTCACTACCTCAGAGAAGACTGTGGACCTGGAGCCCTGCACTGGGTTTCAGAGGAAGCTGATCTACCAGACTCTCAACTCCAAGTTCCCAAAGGGTCTTCATGTGGAGACCTTGGAGACAGAGAAGAAAGAGCGCTACATCCAGATCAGCAAGGTGGACGATGAGGAGCGGAAGAGGAGGGAGcggcagaaacaggagagagaacagGAGGAGCTGAATGACGCTGTGGGATTCTCCAGGGTCATACACGCCATCTCCAAATCTGGAAAGTTGGTGGTTGGCCACAACATGCTGCTGGACGTCATGCACACCATCCATCAGTTCTACTGCGTACTGCCAGAGGACCTGAATGACTTTAAAGAAGTCACTCAGTGTGTCTTCCCCAGGCTGTTGGACACCAAGCTCATGGCCACTACGCAACCTTTCAAGGAGTTGATCAACATCACGTCTCTAGCAGAGCTGCAGAAACAGCTGAAAGAGAGCCCCTTCAAATCTCCTAAAGTTGTGACGGCGGAGGGGTTCCCCAGCTACGATACAGCCCAGGAACAGCTCCACGAGGCGGGCTACGATGCCTTCATCACTGGTCTCTGCTTCATCTCCATGGCCAACTACCTAGGTACTTTCCTGACTCCCCCCAGAGCCCACATCCCATCCCAATCGAAACTCATCCAACCCTTTGTCAACAAACTGTTCCTGATGAGGATCATAGATATTCCCTACCTCAACATCAGCGGACCAGACCtCCAACCCAAGAGGGATCATGTTCTGTACGTCACCTTCCCTAAGGAGTGGAAGACCAGTGACCTCTACCAGCTGTTCAGTGCCTTTGGTAACATCCAGGTGTCGTGGATTGATGACACGTCAGCGTTTGTATCTCTGAGTCAGACGGACCAGGTTCAGATCGCGATGAACACCAGTCGCTATGCGGAGAGCTACCGTATCCAGACGTATGCAGAGTATGTCCAGGGCAGGCAGCAGGTCAGGGAGAGCCAGGGCCATTCTACCCAGTCCTGGGACGAGGACGGCTGGGTTAAACCGCACTACACCTCCCCCTCTACAGTTGGTGCTGGTCCTACTGGCTACAGCTACGGTCACAACAGGCCGTCGTTGGGGAAACGCTGCGTCAGTCCGATCCAGGAGGAGCAGCCCACGGAGGGAGAGGCTCAGAGATCACACGCTGACGGATGGAGTGgctacacacactctcacacacactccgacACGGGCAGCAAGAAGATCAGGACCGAcgGGGTGTGTGTACGGACGTATGCAGGAGTAGTGGACAGCAGGACGTCAGAAGGCTGGCTGAAAACTCAGTCTGGGTCTGATTCGTCGAGCATGAGTCCGATCCAGGAAGAGGCGGGGTCGGAGGCGGGAGACGACGCTAGTGATCCGGCGGCGGGCGAATGGCAACAGCAGCCTTCAACCAATCAGAGCAAGAAGAGCCGCAAGAACAACAAGAAGAGGAAGACTGATGGTGCAGAGACGACGTCTTCTCTGTTCGACGTACCTCAGGTCTGGTAGCGATGGAACCCTGGCTCCTTACCACTTGGGTTCCTACTTCCTACCCCTGGCCACTTGACTCCTACCCCCTAGGACCGGGTTTGGAACGAGGCCTGAAGTTTCAACCAGCTGCACTTATCTGACTGGCTGAGAGAAACAAAGCCATAAATCATGATAGGATTCCTCAGCATGTGGTATAGCAGGATATTCTTTAGGAAAGAAAAAACGGtcctaaatggctccctattccgtatatagtacactacttttaactacggccaatagggctctggttcaaactagtgcactatggATTGTGTCCCAAATATTTTTTTCActgccttttttgttgttgctcgcACTGTTTTTCATTTCTGATTGATTGATAAATCTCCTGTATCGTGATGGATTAGGTAGTTACCACTCTGCATGTTGTGGTGCTACTGACAGCTGTTCAGTATGGAGAGAGAACTCACACCCAGGCTCTACTCGCCTGACCCACCAGGCTCTACTCGCCTGACCCACCAGGCTCTGAAATGGCAGTCTGATCTCTGTTCCACTACtcttaaccagggtctatagcgctctggtcaaaactagtgctctatatagggggATGGGGGCCATTTGGTTCACAGCCGGGGTCTGTGTTCCATGAGGATCAACGTTATAGAATATTCATCTAGAAATACACTATCTAGATTTGATGCGCTTTGTTCTATAGAAGAGGGAATCGTGTCATGGTGTGTGTTTTCTACGTTGTATCATCCTGAACAGGCTCGTTGTTCCACGACCTCCTAGTTACTGTCACCGAGTCTGAAATCTTTCCCCTCACTGTTTCTGTTACCGGTGCCAAACCGGTTTAGTTTTAACCGTAAAAATGTTGCCTCCGTGTCCCGTTCATCGTGAACCATCATTAAGTGtctcttaaccccccccccccccccccccccccaaatgccACTTGACTGATTCTAGTGTAACACTGCTGTAGTAGGATTTTAAATGTAGTTTAAATAACTTCCTTTTTTAAAAATATGTATAAAGTTAAAGCCCCTCCCCTCTAATTTTATAGATCCTGCTAGAACCTTCTCTGATGGTGTGTCCTAAATGGCTCCCTGTATAGTGCAGTgtactagaaagggaatagggccctgtGTAGTGCAGTGTACCAGAAAGGGAATAGGAAGCCATTTTGTGAAACAACAAGAGGTGTGGTTTTTTTGGCGTGGTTGGTCTTTTCCctacaacagacagacagtctagtGGCATTATTACTTTTGTATGgaatactttttgttgttgtggcgtttaaatgtctttatttttgcTGTCTTTACTTTCCCCTCGTTGTTACGTCCTCCCCTGCAACTGTGTCAAATATTGTATCGATGCAAAACGTGTCAACGTTAAAGAATACGCTGTTTTTTGTAtgaaaaaatgtctaaacaaATATTTCCTTATGAACAGGAACAATTAAAGAACGTTTCTTAGTAA
>XM_036948746.1
GAGTGACAGCGGCGGTTTGATTTCAAAGACAGTTTAAGCACTGTGTACAGCGCAATAGAGGAAGCAGACTTTCTCGCAATCGATGGGGAATTTTCAGGTATTAGCGATGGGCCCAACGTCAGCGCACTGACTAACGGGTTGGACACGCCAGAGGAGCGCTACATGAAGCTAAAAAAGCATTCCATGGACTTCTTGCTGTTTCAGTTTGGACTGTGTACGTTCACATATGACCAGGCAGAGTCCAAGTACGTCATCAAGACTTTTAATTTTTATATATTCCCAAAGCCGTTCAACAGAACCTCCCCAGACACCAAGTTCATCTGCCAGAGTTCCAGCATTGACTTCCTGGCCAGTCAGGGTTTTGACTTCAACAAAGTGTTCCGTCACGGGATCCCGTACCTGAACCAGGAAGAGGAAGTGCAGCTGCGGGAGCAGTATGAGGAGAGGCGGAGTCAGAGTAACGGATCAGGAAACCCCTCCTACATCTCCCCCAACTCAAACAAAGGCCCCGGCAGCATCCCAGAGGAGCACAGGGAGTACATCGGGCGAGTGGTAGAGAAGGTGGAATCTCTGTTCACTACCTCAGAGAAGACTGTGGACCTGGAGCCCTGCACTGGGTTTCAGAGGAAGCTGATCTACCAGACTCTCAACTCCAAGTTCCCAAAGGGTCTTCATGTGGAGACCTTGGAGACAGAGAAGAAAGAGCGCTACATCCAGATCAGCAAGGTGGACGATGAGGAGCGGAAGAGGAGGGAGcggcagaaacaggagagagaacagGAGGAGCTGAATGACGCTGTGGGATTCTCCAGGGTCATACACGCCATCTCCAAATCTGGAAAGTTGGTGGTTGGCCACAACATGCTGCTGGACGTCATGCACACCATCCATCAGTTCTACTGCGTACTGCCAGAGGACCTGAATGACTTTAAAGAAGTCACTCAGTGTGTCTTCCCCAGGCTGTTGGACACCAAGCTCATGGCCACTACGCAACCTTTCAAGGAGTTGATCAACATCACGTCTCTAGCAGAGCTGCAGAAACAGCTGAAAGAGAGCCCCTTCAAATCTCCTAAAGTTGTGACGGCGGAGGGGTTCCCCAGCTACGATACAGCCCAGGAACAGCTCCACGAGGCGGGCTACGATGCCTTCATCACTGGTCTCTGCTTCATCTCCATGGCCAACTACCTAGGTACTTTCCTGACTCCCCCCAGAGCCCACATCCCATCCCAATCGAAACTCATCCAACCCTTTGTCAACAAACTGTTCCTGATGAGGATCATAGATATTCCCTACCTCAACATCAGCGGACCAGACCtCCAACCCAAGAGGGATCATGTTCTGTACGTCACCTTCCCTAAGGAGTGGAAGACCAGTGACCTCTACCAGCTGTTCAGTGCCTTTGGTAACATCCAGGTGTCGTGGATTGATGACACGTCAGCGTTTGTATCTCTGAGTCAGACGGACCAGGTTCAGATCGCGATGAACACCAGTCGCTATGCGGAGAGCTACCGTATCCAGACGTATGCAGAGTATGTCCAGGGCAGGCAGCAGGTCAGGGAGAGCCAGGGCCATTCTACCCAGTCCTGGGACGAGGACGGCTGGGTTAAACCGCACTACACCTCCCCCTCTACAGTTGGTGCTGGTCCTACTGGCTACAGCTACGGTCACAACAGGCCGTCGTTGGGGAAACGCTGCGTCAGTCCGATCCAGGAGGAGCAGCCCACGGAGGGAGAGGCTCAGAGATCACACGCTGACGGATGGAGTGgctacacacactctcacacacactccgacACGGGCAGCAAGAAGATCAGGACCGAcgGGGTGTGTGTACGGACGTATGCAGGAGTAGTGGACAGCAGGACGTCAGAAGGCTGGCTGAAAACTCAGTCTGGGTCTGATTCGTCGAGCATGAGTCCGATCCAGGAAGAGGCGGGGTCGGAGGCGGGAGACGACGCTAGTGATCCGGCGGCGGGCGAATGGCAACAGCAGCCTTCAACCAATCAGAGCAAGAAGAGCCGCAAGAACAACAAGAAGAGGAAGACTGATGGTGCAGAGACGACGTCTTCTCTGTTCGACGTACCTCAGGTCTGGTAGCGATGGAACCCTGGCTCCTTACCACTTGGGTTCCTACTTCCTACCCCTGGCCACTTGACTCCTACCCCCTAGGACCGGGTTTGGAACGAGGCCTGAAGTTTCAACCAGCTGCACTTATCTGACTGGCTGAGAGAAACAAAGCCATAAATCATGATAGGATTCCTCAGCATGTGGTATAGCAGGATATTCTTTAGGAAAGAAAAAACGGtcctaaatggctccctattccgtatatagtacactacttttaactacggccaatagggctctggttcaaactagtgcactatggATTGTGTCCCAAATATTTTTTTCActgccttttttgttgttgctcgcACTGTTTTTCATTTCTGATTGATTGATAAATCTCCTGTATCGTGATGGATTAGGTAGTTACCACTCTGCATGTTGTGGTGCTACTGACAGCTGTTCAGTATGGAGAGAGAACTCACACCCAGGCTCTACTCGCCTGACCCACCAGGCTCTACTCGCCTGACCCACCAGGCTCTGAAATGGCAGTCTGATCTCTGTTCCACTACtcttaaccagggtctatagcgctctggtcaaaactagtgctctatatagggggATGGGGGCCATTTGGTTCACAGCCGGGGTCTGTGTTCCATGAGGATCAACGTTATAGAATATTCATCTAGAAATACACTATCTAGATTTGATGCGCTTTGTTCTATAGAAGAGGGAATCGTGTCATGGTGTGTGTTTTCTACGTTGTATCATCCTGAACAGGCTCGTTGTTCCACGACCTCCTAGTTACTGTCACCGAGTCTGAAATCTTTCCCCTCACTGTTTCTGTTACCGGTGCCAAACCGGTTTAGTTTTAACCGTAAAAATGTTGCCTCCGTGTCCCGTTCATCGTGAACCATCATTAAGTGtctcttaaccccccccccccccccccccccccaaatgccACTTGACTGATTCTAGTGTAACACTGCTGTAGTAGGATTTTAAATGTAGTTTAAATAACTTCCTTTTTTAAAAATATGTATAAAGTTAAAGCCCCTCCCCTCTAATTTTATAGATCCTGCTAGAACCTTCTCTGATGGTGTGTCCTAAATGGCTCCCTGTATAGTGCAGTgtactagaaagggaatagggccctgtGTAGTGCAGTGTACCAGAAAGGGAATAGGAAGCCATTTTGTGAAACAACAAGAGGTGTGGTTTTTTTGGCGTGGTTGGTCTTTTCCctacaacagacagacagtctagtGGCATTATTACTTTTGTATGgaatactttttgttgttgtggcgtttaaatgtctttatttttgcTGTCTTTACTTTCCCCTCGTTGTTACGTCCTCCCCTGCAACTGTGTCAAATATTGTATCGATGCAAAACGTGTCAACGTTAAAGAATACGCTGTTTTTTGTAtgaaaaaatgtctaaacaaATATTTCCTTATGAACAGGAACAATTAAAGAACGTTTCTTAGTAA

Function

NR:

description
poly(A)-specific ribonuclease PARN

GO:

id name namespace
GO:0006402 mRNA catabolic process biological_process
GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004535 poly(A)-specific ribonuclease activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K01148 PARN, PNLDC1; poly(A)-specific ribonuclease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948745.1 False 3713 mRNA 0.49 26 7566150 7599621
XM_036948746.1 True 3573 mRNA 0.49 26 7566239 7599621

Neighbor

gene id symbol gene type direction distance location
LOC110485355 LOC106593569 coding upstream 4853 7546347 ~ 7561297 (+)
LOC110485353 LOC106596877 coding upstream 22973 7537291 ~ 7543177 (+)
LOC118940246 NA coding upstream 184896 7365617 ~ 7381649 (+)
LOC110514651 LOC106595305 coding upstream 905372 6636106 ~ 6660778 (+)
LOC110513544 LOC106564138 coding downstream 84081 7683702 ~ 7856746 (+)
LOC118936549 LOC106590476 coding downstream 449061 8048682 ~ 8070845 (+)
LOC118940250 LOC106564141 coding downstream 471364 8070985 ~ 8141262 (+)
LOC118940075 LOC106564154 coding downstream 647066 8246687 ~ 8250437 (+)
LOC110499479 ubl5 coding downstream 784760 8384381 ~ 8392496 (+)
G1417334 NA non-coding upstream 32045 7533110 ~ 7534105 (+)
G1417333 NA non-coding upstream 33784 7531887 ~ 7532366 (+)
G1417322 NA non-coding upstream 47714 7517585 ~ 7518436 (+)
G1417314 NA non-coding upstream 62891 7502756 ~ 7503259 (+)
G1417307 LOC106564128 non-coding upstream 67251 7470134 ~ 7498899 (+)
G1417372 NA non-coding downstream 33294 7632915 ~ 7633177 (+)
G1417482 NA non-coding downstream 62528 7662149 ~ 7663503 (+)
G1417493 NA non-coding downstream 75151 7674772 ~ 7675027 (+)
G1417497 NA non-coding downstream 84896 7684517 ~ 7684752 (+)
G1417500 NA non-coding downstream 88718 7688339 ~ 7688614 (+)
G1416559 NA other upstream 231851 7328055 ~ 7334299 (+)
G1416462 NA other upstream 796560 6752802 ~ 6769590 (+)
G1416452 NA other upstream 845756 6719787 ~ 6720394 (+)
G1416413 NA other upstream 915953 6618183 ~ 6650197 (+)
LOC118940005 LOC106593103 other upstream 1041295 6523504 ~ 6578882 (+)
G1417359 LOC106594003 other downstream 3134 7602755 ~ 7606668 (+)
G1417508 NA other downstream 98306 7697927 ~ 7698422 (+)
G1417561 NA other downstream 235481 7835102 ~ 7835589 (+)

Expression


Co-expression Network