LOC110513544 (LOC106564138)


Basic Information

Item Value
gene id LOC110513544
gene name LOC106564138
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 7683702 ~ 7856746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948755.1
caaGCATAGTGCGCCTGACGCAGTGAGATACGGATagaagacagagaggcagagaacaGAACGGAACggaagagtagagaagagagagcgcTGCATGCGCGAGACAGTGTCGGTGGAACGACAGCTCATCTCGCAGCTGCTGTCTGTCGGATGCCGTGGTTGACACTGCACAGCCTTGAGACGTGATGCTGGATATTCCCGTGGAGATCCGCAACTGCTACTGCTGCTCTCCtccttgaaagagagagagagagagagacatatagaggagaggaaataGAACGGGAAGGGAAGAGCGTGTCACAGAAGCGGCAGAAGGGGTTTTGGGTGATATCTGAGATGAATCGCTAACCGTACGGTCAGATGTCTAACGGTTTCGCCGTTTTCCACACCAGGTTACTCCGCTCCAGAGCCCCAAGACAACAACAGGACgtccctgacctttaacctaaatTTCTGGCCAACCTATGAACCACCAATGAGGAGGCACGAGAGTAGACAGAGATCCAATCAGGGTTCCCGAAGACCAAACATCAAATGGTGAAATAGCCAATCAGATGGGAGGAAAAGGACAGAGCCATACTCAGCCGTCTCCCTGACGACAGTCCACAGGACCACAGACAAATGTAGCTCCAGAGGTTGTCCTCGTCATCCCTGACTCTCACACACTGTGGAAAACATGAACAGAAATGTAAATGGAGGCTCAGATTGATCTCTCAATGTAAATGGAGGCTCAGATTGATCTGTCAATGTAAATGGAGGCTCAGATTGATCTCTCAATGTAAATGGAGGCTCAGATTGATCTCTCAATGTAAATGGAGGCTCAGATTGATCTCTTAATGTAAATGGAGGCTCAGATTGATCTGTCAAGTCAAGTGCATAAATAAAAGGTGTGGAGACTCTGTCCAATGAGCTACGTCAAGGTACTTCCCTCTAActcttctctgttcctctggaCCAATCAAAGGAGGACCGTCCTTCCTCCGGACCAATCAAAGGAGGACCATCCTTCCTCCAGACCAATCAGAGGAGGACCCATCCTTCCTCCTGACCAATCAGAGGACCATCTCCCCCAAAAAACTAATGGGTCCTCAAGTGAAAAAGATGTTGTGTCCTTCCTACGGACTAACCTGAGAGAAAGACGAGTTCCTGTTAAAACCTTCCTTTTTTGTGTGTGGGACTAACCTGAGAGAAAGACGAGTTCCTTTTAAAACCttcctttttttgtgtgtgggacTAACCTCAGACAAAAACTAGGACTACTCTAAAACTACTCTCTCCTTCCAACCCAACCCTGCCTTCTACTGCCGGGTGGACCAACGACACAGTGGAGAGCTAACATTGGTAAAGGCTGTATAGCTCTGGAGATCACAGGGCACAAGGTGCTCGTTGGATAGGTTCAACGAGAAGAGGAGAAGACTTTATTAATCCATGCCAGACGTGAAATTGGACTGTAGTAACAATCATCATTCTTTGCACTTCTCTTCCTCGCAGTGACgctaacctggataaataaacAAAATCAATAAACAAAAACAACTATAATCAACAACATGGACGTCATCATCGGAACGCCAACACAACCCCGAGAGGCGGGGTTTAACAACAGAGTGGGCGGGGTTACGGTGGCGTTGTCGGCGACCAGTTGGTTTGCCTTCCTCTATGGCTTTGCCCTACTGTCAATCATCCAATTTCCCACGGTGACGGGCGACTGTTGGCTGATTGAGGGGGAGAAGGGCTTCGTGTGGTTGGCTATCTGCAGCCAGAACCAGCCCCCATATGAAGCGATtcctgcccacatcaacagCACCATCGTGGACCTGAGGCTCAACGAGAATAAGATCAAGAGTATCCATTTCTCATCGCTCAGCCGCTTTGGGAACCTGACGTACCTCAACCTCACCAAGAACGAGATCTCGTACGTGGAGGATGGAGCCTTCTCGGCCCAGTTCAACCTACAGGTGCTGCAGTTGGGGTTTAACCGTCTGAGGAACCTAACAGAGGGAATCCTCAGAGGGCTGGGGAAGCTGCAATACCTCTACCTACAGGCCAACCTGATCGAGGCAGTCACCCCCAACACCTTTGAGGAGTGTCCTAACATCGAGAACATTGACCTCTCCATGAACAGGATCCAGGTGTTGGACGGAGGCTTGTTTACGGCGCTCGGTAGATTAACGACGTGTGAACTCTACACTAACCCGTTCAACTGCTCCTGTGAGCTGTTGGGATTTCTACGCTGGTTGGCAGTCTTCCCCAACAGGACCAACGAGAGGATGGTGTGTGATACTCCGGCCGGGTTTTCAGGCTACAGCCTCCTCAGTCAGAACCCCAGGATGCCTGCGACACGCAACGCTCTGCACATGCTCAATATGgTGTGTACCGATGACGGGAGCAACTCTTTTCCGAACATCATTGTTCAGTCAGAGTTTACGACCCTCCCACCGTACTCTCCCTGCGGATTGGACGACTGCCCTTCTGGAATGTCCCCGGAGGACCCAATCAGCATCAGCCCCACCTACCCTGATCTGAACAACAAGCCTAGTATGAAGGTGAAACAGaTCTCCCACACCTCAGCAGTGATCTCGGTCCAGATCCCTCACCCCTTCAGTAAGATGTACATCCTGgttctctacaacaacagcttcTTCACTGACATAAAGAACCTGAAGAACCACAAGGAAGAGTTTGAACTGAACAACCTGAAAGCCCACACTGactacACCTACTGCGTCGTGTCCATAAGACACCAGCTTCGTTATAACCACACCTGTCTGTCCATCTCCACCGGGAGGAAGGCAGGTCTAGAGAGGACCTCCAACGACTCCTCTGCTACCCACTACATCATGACTATACTGGGCAGTCTCTTCAGCATGGTCCTCATACTGGGTTTCGTGTTCCACTGCCTGAGGAAGAAGAGGCAGCGAGACGAGAAGAACAAGAAGATTGGAAAGATACAGAAGAGCCTGATGGAGCTGAAATACGGAGCTGAcctggagggtggtggaggaacaggaggagggggGTCCATCTCTCAGCTATCCCAGAAACAGATGCTCTCGGCTGGGGAGAGTCTCACGCGGATGCCCTACCTTCCCCAGGGTGGGACCTGTGAGATGGACCAGTACAAGCTACAGGAGGTCATTGACACTCCAAAGGCAGCGAAAGGGAACTATATCGAAGTGCGAGGAACTGACCTGCCGgaccggagggagagagagagggaacgagagcgggagagagagagggaaagagagagggaatgtagTCTCTCTCCACAAGACAACCCTCAGggtTCAGTAGCAGAGATCTCCACCATCGCCTCAGAGGTGGACAAGGTTAACCAGATCATCAACAACTGTATTGACGTCCTCAAGTCTGAGTCGACGTCGTTCCAGGGGGTCAAGTCAGGCTCTGTGTCGACCGCTGAACCCCAACTAGAGCTGATCTCAGACCAGCCACAGAGACAGTCAGGGTTCCTGTCACCGCAGTATAAAGGAGGTTACCACCACCCTCTCCAGAGACACCACAGTATGGAAGCAGCATCCAAACGACCTTCGACCTCCTCCAGCGGATCCGTCCGCTCCCCGCGCCCCTCCCGCTCCGACGGGCCGCACCGGGGAACCTCTGACACCAAGTACATGGAGAAGACCTCGCCGACCGGAACCAGCGGAGACACCGCCGGGACGCCCGCCGCTGCCATCTTACGGGCAGAGGCCCAGAAGGTCCGACAGTACAAGGAGCAGCGCCACTCGTACCCGGGCCCCCAGCGCCCCCTCCCTGACTCTGAGGAGCTAGAGGAGCTGAGTAGCAGGAAACCCTCTTCCATCCTGGATCCCCTCACACTGGGGAGGCACCCCAGAGAGCTAGCCTACGCCCAGCTGTCCCCGCAGTACCACAACCTGAGCTACGAGTCCAGTCCTGAGTACTCCTGCACCCCGTCGCTCGGCATCTGGGAGAGGTTCAAACTCCACCGGAAGAGACACAGAGACGAGGACTACGAGGAGGAATACATGGCGGCAGGACACGCACTGAGGAGGAGTTTGCAGGTCGCCAAGGACGAGGATCTGCACGACATACTGGACTATTGGAAAGGTGTCTCGGCACAGCAGAAGTCGTGAAGGGGCTGGTGTCGTGTGCTGTGACGAGGCCCTGTCACTACTGAGTTGGGCATGAAGGAGGACGGAGGTCGGAGGTCGTACGGCGACTAAGGGCTCTCTATTCCACCTGGAAAGATGAGGCGTTACAGATTCCGCGATTAGTTTCTGATTGACGTCTCTGCTACAGCTGgaacatctacacacacacacacacacacacacacacacacacacacacagacagacacagacacagacacagacacagacacacacagacacac
>TU1621124
CCTGTGAGCTGTTGGGATTTCTACGCTGGTTGGCAGTCTTCCCCAACAGGACCAACGAGAGGATGGTGTGTGATACTCCGGCCGGGTTTTCAGGCTACAGCCTCCTCAGTCAGAACCCCAGGATGCCTGCGACACGCAACGCTCTGCACATGCTCAATATGgTGTGTACCGATGACGGGAGCAACTCTTTTCCGAACATCATTGTTCAGTCAGAGTTTACGACCCTCCCACCGTACTCTCCCTGCGGATTGGACGACTGCCCTTCTGGAATGTCCCCGGAGGACCCAATCAGCATCAGCCCCACCTACCCTGATCTGAACAACAAGCCTAGTATGAAGGTGAAACAGaTCTCCCACACCTCAGCAGTGATCTCGGTCCAGATCCCTCACCCCTTCAGTAAGATGTACATCCTGgttctctacaacaacagcttcTTCACTGACATAAAGAACCTGAAGAACCACAAGGAAGAGTTTGAACTGAACAACCTGAAAGCCCACACTGactacACCTACTGCGTCGTGTCCATAAGACACCAGCTTCGTTATAACCACACCTGTCTGTCCATCTCCACCGGGAGGAAGGCAGGTCTAGAGAGGACCTCCAACGACTCCTCTGCTACCCACTACATCATGACTATACTG

Function

NR:

description
protein ELFN1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948755.1 False 4381 mRNA 0.53 14 7683702 7856746
TU1621124 True 644 TUCP 0.52 5 7844926 7848225

Neighbor

gene id symbol gene type direction distance location
LOC110487504 LOC106593600 coding upstream 84081 7566150 ~ 7599621 (+)
LOC110485355 LOC106593569 coding upstream 122405 7546347 ~ 7561297 (+)
LOC110485353 LOC106596877 coding upstream 140525 7537291 ~ 7543177 (+)
LOC118940246 NA coding upstream 302448 7365617 ~ 7381649 (+)
LOC118940233 NA coding upstream 1026728 6654467 ~ 6656974 (+)
LOC118936549 LOC106590476 coding downstream 191936 8048682 ~ 8070845 (+)
LOC118940250 LOC106564141 coding downstream 214239 8070985 ~ 8141262 (+)
LOC118940075 LOC106564154 coding downstream 389941 8246687 ~ 8250437 (+)
LOC110499479 ubl5 coding downstream 527635 8384381 ~ 8392496 (+)
LOC110516831 LOC106593980 coding downstream 595353 8452099 ~ 8491706 (+)
G1417493 NA non-coding upstream 8675 7674772 ~ 7675027 (+)
G1417482 NA non-coding upstream 20199 7662149 ~ 7663503 (+)
G1417372 NA non-coding upstream 50525 7632915 ~ 7633177 (+)
G1417353 NA non-coding upstream 98483 7584865 ~ 7585219 (+)
G1417352 NA non-coding upstream 99502 7583763 ~ 7584200 (+)
G1417567 NA non-coding downstream 6936 7863682 ~ 7864193 (+)
G1417572 NA non-coding downstream 31900 7888646 ~ 7891454 (+)
G1417588 NA non-coding downstream 85484 7942230 ~ 7944441 (+)
G1417592 NA non-coding downstream 92671 7949417 ~ 7950345 (+)
G1417596 NA non-coding downstream 104621 7961367 ~ 7961818 (+)
G1417359 LOC106594003 other upstream 77034 7602755 ~ 7606668 (+)
G1416559 NA other upstream 349403 7328055 ~ 7334299 (+)
G1416462 NA other upstream 914112 6752802 ~ 6769590 (+)
G1416452 NA other upstream 963308 6719787 ~ 6720394 (+)
G1416413 NA other upstream 1033505 6618183 ~ 6650197 (+)
G1417618 NA other downstream 276438 8133184 ~ 8135426 (+)
G1417682 NA other downstream 347655 8204401 ~ 8204911 (+)
G1417938 NA other downstream 513095 8369841 ~ 8370510 (+)
G1417560 NA non-coding upstream 10049 7834671 ~ 7834877 (+)
G1417556 NA non-coding upstream 21351 7823151 ~ 7823575 (+)
G1417550 NA non-coding upstream 35700 7808901 ~ 7809226 (+)
G1417534 NA non-coding upstream 79149 7764472 ~ 7765777 (+)
G1417532 NA non-coding upstream 85909 7758752 ~ 7759017 (+)
G1417561 NA other upstream 9337 7835102 ~ 7835589 (+)
G1417508 NA other upstream 146504 7697927 ~ 7698422 (+)

Expression


Co-expression Network