XLOC_033173 (romo1)


Basic Information

Item Value
gene id XLOC_033173
gene name romo1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 50401620 ~ 50404732 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064448
TTTGGCACTTCCTCTCAAGTAATGGCGTCCGTGTGAAACAGTCCTATCGCAAACATTGAGCTAGGTTGTCACAAAAACTAACCAACAGGGCCACTAAAATAGCGATTTGAACAAGATGCCGGTGAGTGTAGGATCGTACGGACAGCAGGCTCAGCCCAGCTGCTTTGACAGAGTCAAGATGGGCTTCATGATGGGCTTTGCTGTAGGAATGGCTGCAGGTGCCATGTTTGGGACTTTCTCCTGTCTCAGGATTGGCATGCGGGGTCGAGAGTTGATGGGCGGAGTTGGGAAGACGATGATGCAAAGCGGTGGTACGTTTGGGACCTTCATGGCGATTGGGATGGGAATCCGCTGCTGAGATCACACTAATGCCACTCAAGTAATAGGACTTTGAAGCATTTTCCATTCACCCGTTTGTTATCACACCCAGATTCAAGGACATCGGTGTTAATAAAGagtaatagaaatgtttttttttctgtaaatctcTAAGGCTCAAATGTAAGACCTGATTGTTGATCGATAATGACAGCCCTACTTTTTATTGGAGTTCACCAGAACAGGTTAAAGTCAACTTAAATGACCTTTCTGCAGTTTACGGAGGGCTTACAATGAAGAAGggctatttattttgaaaaacaacgTTGTTTGAAACACATTTTAAGTTTAAGCATGACAATAAGAAATAGCACACACTTACCTTGAGGTGCTGCTACATTAGTATCATCTAAGGGGTTGACAATTCCAGGATAGTCTTTGCCAAATGAAAGATGTTTGATGAAATGTGTCATGTTGATCTGtggtcaaacaaaacaaaatcattaaaTTTTGGTCTAATATTCTGAGCAAACACAAGAGCAATCTTATTGAAGAAGAGAACTGAACAACTCACATTGTCTAGGCCAAAGCTTTGCAGATCATGAactgaaaataaagcaaattgaAAAATATGAA

Function

symbol description
romo1 Predicted to be involved in several processes, including positive regulation of reactive oxygen species metabolic process; protein targeting to mitochondrion; and replicative senescence. Predicted to act upstream of or within defense response to bacterium. Predicted to be located in mitochondrion. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex. Is expressed in several structures, including alar plate midbrain region; liver; optic tectum; optic vesicle; and retina. Orthologous to human ROMO1 (reactive oxygen species modulator 1).

GO:

id name namespace
GO:0001302 obsolete replicative cell aging biological_process
GO:0030150 protein import into mitochondrial matrix biological_process
GO:0042742 defense response to bacterium biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0034614 cellular response to reactive oxygen species biological_process
GO:2000379 positive regulation of reactive oxygen species metabolic process biological_process
GO:0045039 protein insertion into mitochondrial inner membrane biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1768 Predicted to be involved in several processes, including positive regulation of reactive oxygen species metabolic process; protein targeting to mitochondrion; and replicative senescence. Predicted to act upstream of or within defense response to bacterium. Predicted to be located in mitochondrion. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex. Is expressed in several structures, including alar plate midbrain region; liver; optic tectum; optic vesicle; and retina. Orthologous to human ROMO1 (reactive oxygen species modulator 1).

Ensembl:

ensembl_id ENSDARG00000038076

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064448 True 954 mRNA 0.41 3 50401620 50404732

Neighbor

gene id symbol gene type direction distance location
XLOC_033172 NA coding downstream 21408 50359657 ~ 50380212 (-)
XLOC_033170 raly coding downstream 197358 50021410 ~ 50204262 (-)
XLOC_033171 CU928043.1 coding downstream 266183 50135319 ~ 50135437 (-)
XLOC_033169 asip1 coding downstream 418291 49975910 ~ 49983329 (-)
XLOC_033167 BX629346.2 coding downstream 475303 49918254 ~ 49926317 (-)
XLOC_033174 NA coding upstream 53236 50457968 ~ 50505438 (-)
XLOC_033175 mtss1 coding upstream 176208 50580940 ~ 50685862 (-)
XLOC_033176 osgn1 coding upstream 290649 50695381 ~ 50704689 (-)
XLOC_033177 pigu coding upstream 309068 50713800 ~ 50730749 (-)
XLOC_033178 BX530017.2 coding upstream 337583 50742315 ~ 50747545 (-)
XLOC_033168 BX629346.1 non-coding downstream 479763 49919936 ~ 49921857 (-)
XLOC_033163 NA non-coding downstream 629981 49760355 ~ 49771639 (-)
XLOC_033179 BX530017.1 non-coding upstream 349769 50754501 ~ 50756448 (-)
XLOC_033181 NA non-coding upstream 1124031 51528763 ~ 51541488 (-)
XLOC_033186 NA non-coding upstream 1621759 52026491 ~ 52034656 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G494854 NA non-coding CI01000340 null 14754883 ~ 14756719 (-)
bowfin (Amia calva) AMCG00007952 romo1,LOC102788570 misc CM030123.1 CM030123.1 38168570 ~ 38170146 (+)