LOC110513340 (LOC106593387)


Basic Information

Item Value
gene id LOC110513340
gene name LOC106593387
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 9030493 ~ 9049651 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948813.1
TTTGCCTGGTTGGCACTTCCAACCAGATATAAGGAGGCTGAGGCCCCAGCATCCATAAGTCAGATACCTTCTTCCTCTGTGGGTCCTCCAAGAAGTACACATTCATCTGTAGGAGGGGAAAAAGAAGTTATCCGTCACCATGAGTACGGACGCGGAGATGCAAATCTACGGCAAGGCTGCCATATACCTTCGTAAGCCTGAGAGGGAAAGGATTGAGGCACAAACCGCACCCTTTGATTCAAAGAACTCCTGCTATGTGACAGACAAGGCGGAGCTGTACCTTAAGGGTCTGGTCACTGCCAGGGCCGACGGGAAGTGTACTGTAACAGTCATTAAACCTGACGGCACTAAGGAGGAAGGAAAAGAGTTCAAAGATGCAGACATCTTCGAGATGAACCCCCCTAAGTATGACAAGATTGAGGACATGGCCATGATGACCTACCTGAATGAAGCCTCTGTGTTGTATAACCTCAAAGAGCGTTATGCAGCATGGATGATCTATACCTACTCTGGGCTCTTCTGTGCCACGGTGAACCCCTACAAGTGGCTCCCTGTGTACGACGCAGAGGTTGTCAACGCCtacagagggaagaagaggatggaggctccaccccatatcttctctgtctctgacaaCGCCTTTCAGTTCATGATGATTGataaggAGAACCAGTCCGTCCTGATTACCGGAGAATCCGGTGCAGGAAAGACTGTCAACACCAAGCGTGTCATCCAGTACTTTGCCACCATTGCAGTGTCTGGGGCCAAGAAAGAAGCAGAACCTGGCAAAATGCAGGGGTCTCTTGAGGATCAGATCATTGCAGCTAACCCTCTGCTGGAGTCTTACGGTAATGCCAAGACAGTGAGGAACGACAACTCGTCTCGCTTTGGTAAATTCATCAGGATTCACTTCCAAGGTGGTAAACTGGCTAAAGCTGACATTGAAACCTacctgctGGAGAAGTCCAGAGTGTCCTTCCAGCTGCCCGATGAGAGAGGCTACCACATCTTCTTCCAGATGATGACAGGCCACAAACCTGAGCTAGTTGAAATGGCGCTCATCACCACTAACCCCTATGACTTCCCCATGTGCAGTCAGGGACAGATCACTGTGGCCAGCATCAACGACAATGAAGAGCTGGATGCCACAGATGATGCCATTACAGTCCTGGGCTTCAGTAACGATGAGAAGGTTGGCATCTACAAGCTGACAGGAGCTGTATTGCACCATGGAAACTTGAAATTCAAGCAGAAGCAGCGTGAGGAGCAGGCCGAGCCAGACGGCACAGAGGTGGCTGATAAAATTGCCTACCTGTTGGGCCTGAACTCAGCTGAGATGTTGAAAGCTCTGTGCTACCCCAGAGTGAAGGTCGGCAACGAGTATGTGACCAAGGGACAGACTGTGCCTCAGGTTAATAACTCAGTCAGTGCTCTGGCCAAGTCCATCTATGAGAGGATGTTCTTGTGGATGGTCATCCGTATCAATGAGATGTTGGACACCAAGAATCCAAGGCAGTTCTATATCGGTGTGCTTGACATTGCCGGGTTTGAGATCTTTGATTACAACAGCATGGAGCAGCTGTGCATCAACTTCACCAATGAGAAACTGCAacagtttttcaaccacaccatgtTCGTCCTGGAGCAAGAGGAGTACAAGAAGGAGGGAATCGTCTGGGCCTTCATTGACTTCGGCATGGACTTGGCTGCCTGCATTGAGCTTATTGAGAAGCCATTGGGCATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAGTCTTCAGACACTACCTTCAAGGACAAGCTGTACGCCCAGCATCTTGGCAAAACAAATGCATTTGAGAAGCCCAAGCCTGCCAAAGGCAAGGCAGAGGCCCACTTCTCCCTGGTGCACTACGCCGGAACTGTGGACTACAACATCACTGGATGGCTGGAGAAGAACAAGGATCCCCTGAACGACTCAGTTTGTCAACTGTACCAGAAGTCCTCAGTCAAAATTTTGGCTGCCCtgtatccccctccccctcctgagGATAAAGCCAAGAAAGGAGGCAAGAAGAAGGGTGGTTCCATGCAGACTGTGTCCTCCCAGTTCAGGGAGAACTTACATAAGCTGATGACCAACTTGAGGAGCACTCATCCTCACTTTGTGCGCTGCCTGATCCCCAACGAGTCAAAGACTCCAGGTCTGATGGAGAACTTCCTGGTTATCCACCAGCTCAGGTGTAATGGTGTACTGGAGGGTATCAGGATCTGCAGAAAGGGCTTCCCCAGCAGAATCATCTATGCTGACTTCAAgcaaagGTACAAAGTACTGAATGCCAGCGTCATCCCTGAGGGCCAGTTCATGGACAACAAGAAGGCTTCTGAGAAGCTGCTTGGgtccattgatgtgaatcacgagGATTACAAATTTGGACACACCAAGGTGTTCTTCAAAGCCGGTCTGCTGGGTgtcctggaggagatgagagatgagaagcTGGCCACTCTGGTCGGCATGGTCCAGGCTCTCAGCCGTGGATTCCTCATGAGGAGAGAGTTTAGcaagatgatggagaggagAGAATCAGTTTACGCCATCCAGTACAACATCCGCTCATTCATGAATGTCAAAACCTGGCCATGGATGAAGTTGTACTTCAAGATCAAGCCCCTGCTGCAGAGCGCTGAGACTGAGAAGGAGCTGGCCAACATGAAGGAGAACTATGATAAGATGACGACAGACCTGGCCAAGGCTCTGGCCACAAAGAAGCAAATGGAGGAGAAGTTGGTGGCCCTGACACAGGAGAAGAACGACCTGGCGCTCCAAGTCGCATCTGAAGGAGAGAGTCTGAACGATGCTGAGGAAAGGTGTGAGGGGCTCATCAAGAGCAAGATCCAGCTGGAGGCCAAACTCAAAGAGACGACCGAGaggctggaggatgaggaggagatcaATGCTGAGTTGACTGCCAAGAAGAGGAAGCTGGAAGATGagtgctctgagctgaagaaggaCATTGATGACCTGGAGCTCACCCTGGCCAAAGTGGAGAAGGAGAAGCACGCCACTGAAAACAAGGTTAAAAACCTGACAGAGGAGATGGCGTCTATGGATGAGAGTGTTGCCAAGCTGACCAAGGAGAAGAAAGCCCTCCAAGAGGCCCACCAGCAGACACTGGATgacctgcaggcagaggaggacaAAGTCAACACTCTGACCAAGGCCAAGACCAAGCTGGAACAGCAAGTGGACGACCTTGAGGGTTCTCTGGAGCAAGAGAAGAAGCTCCGTATGGACCTTGAGAGATCCAAGAGAAAGCTGGAGGGAGATCTGAAACTGGCCCAGGAGTCCATAATGGACCTGGAGAATGACAAGCAGCAAGCTGATGAGAAAATCAAGAAGAAGGAGTTTGAGACCACCCAGCTCCTCAGCAAGGTTGAGGATGAGCAGTCTCTGGGAGCTCAGCTGCAGAAGAAGATCAAGGAACTCcagGCCCGTattgaggagctggaggaggaaatTGAGGCTGAGCGTGCTGCCAGGGCTAAGGTTGAGAAGCAGAGGGCCGATCTCTCCAGGGAACTTGAGGAGATCAGCGAGAGGCTGGAAGAGGCCGGAGGTGCCACGGCTGCTCAGATTGAGATGAACAAGAAGCGTGAGGCTGAGTTCCAGAAGCTGCGTCGTGATCTTGAAGAGTCCACCCTGCAGCATGAGGCCACAGCCGCCGCTCTGCGCAAGAAGCAGGCCGACAGTGTGGCTGAGCTCGGGGAGCAGATCGACAACCTGCAGCGCGTCAAGCagaagctggagaaggagaagagcgaGTACAAGATGGAGATTGATGACCTCTCTAGCAACATGGAGGCCGTCGCCAAGACTAAGGGCAATCTGGAGAAGATGTGCCGTACTCTTGAGGACCAGCTGAGTGAGCTGAAGACTAAGAATGATGAGAATGTTCGCCAGGTCAACGACATCAGCGGACAGAGGGCCAGACTCCTGACAGAAAATGGTGAGTTTGGCCgccagctggaggagaaggaaGCCCTGGTGTCTCAGCTGACCAGAGGAAAACAGGCCTTCACCCagcaggtggaggagctgaagaggGCGATTGAGGAGGAGGTCAAGgctaAAAACGCACTGGCCCACGGTGTTCAGTCTGCCCGCCATGACTGTGACCTCCTGAGGGAGCAGtttgaggaggagcaggaggccaAGGCAGAGCTGCAACGCGGCATGTCCAAGGCCAACAGTGAGGTGGCTCAGTGGAGGACTAAGTATGAAACTGATGCCATCCAGCGcacagaggagctggaggaggccaAGAAGAAGCTGGCCCAGCGTCTGCAGGAAGCGGAGGAGACCATTGAGGCGACAAACTCCAAGTGCGCCTCCCTGGAGAAGACCAAGCAGAGGctgcagggagaggtggaggacctCATGATTGATGTTGAGAGAGCCAACGCATTGGCCGCCAACCTCGACAAGAAGCAGAGGAACTTTGACAAGGTTCTGGCAGAGTGGAAGCAAAAGTATGAGGAGGGCCAGGCTGAGCTGGAAGGAGCTCAGAAGGAGGCTCGCTCTATGAGCACTGAACTCTTCAAGATGAAGAACTCCTACGAGGAGGCTCTGGATCATCTGGAGActctgaagagagagaacaagaacctGCAACagGAGATCTCTGACCTGACTGAGCAGATCGGAGAGACTGGCAAGAGCATCCATGAGCTGGAGAAGGCCAAGAAGACCGTGGAGACAGAGAAGTCTGAGATCCAGACCGCTCTGGAGGAGGCTGAGGGAACACTGGAGCACGAGGAATCCAAGATTCTGCGTGTGCAGCTGGAGCTGAACCAGATCAAGGGTGAGGTGGACAGGAAGATTGCTGAGAAGGACGAGGAGATGGAGCAGATCAAGAGGAACAGCCAGAGGGTGGTTGACTCCATGCAGAGCACCCTGGACTCTGAGGTCAGGAGCAGGAATGACGCCCTGAGggtgaagaagaagatggagggagacctGAACGAGATGGAGATCCAGCTGAGCCACTCCAACAGGCAGGCCGCTGAGGCCCAGAAACAGCTGAGGAATGTCCAGGGACAGCTCAAGGATGCCCAATTGCACCTTGATGACGCCGTCCGTGTCGCAGAAGACATGAAGGAGCAGGCAGCCATGGTGGAGCGCAGAAACGGTCTGATGGTGGCTGAAATCGAGGAGCTGAGAGTTGCtctggagcagacagagagaggccgcAAAGTGGCTGAGACTGAGCTGGTAGATGCCAGCGAGCGTGTTGGACTGCTGCACTCCCAGAACACCAGCCTTCTGAACACCAAGAAGAAGCTGGAGACTGACCTGGTGCAGGTGCAGGGAGAGGTGGACGACATTGTCCAGGAGGCCAGGAATGCAGAGGAGAAGGCCAAGAAGGCAATCACTGACGCGGCCATGATGGCtgaggagctgaagaaggagcaggACACCAGTTCTCACCtggagaggatgaagaagaacctGGAGGTCACAGTCAAGGACCTGCAGCACCGCCTGGATGAGGCTGAGAATCTGGCCATGAAGGGAGGCAAGAAGCAGCTCCAGAAACTGGAGTCCAGGGTGCGTGAGCTCGAGACTGAGGTGGAGGCCGAGCAGAGAAGAGGTGTAGACGCAGTCAAGGGAGTCCGCAAGTATGAGCGCAGAGTCAAGGAGCTCACTTACCAGACTGAGGAGGATAAGAAGAACGTTAACAGACTTCAGGACCTGGTAGATAAGCTGCAGATGAAAGTGAAGGCCTACAAGAGGCATTCTGAGGAATCGGAGGAAGCAGCAAACCAGCACATGTCTAAGTTCAGGAAGGTTCAGCATGAGCTGGAGGAGGCTGAGGAGCGTGCTGACATCGCTGAGACTCAGGTCAACAAGCTCAGAGCCAAGACCCGTGACTCTGGAAAGGGAAAAGAAGTTGCTGAATAAACAAGACCAAAGAATTGAAGATCAAAGTCTTACCATTTTCCTGTGATGcataaaatatgattttcatggTGAAATGTTGAGCATTGATTAAAAACATGTGGATCTACA

Function

NR:

description
PREDICTED: myosin heavy chain, fast skeletal muscle-like isoform X1

GO: NA

KEGG:

id description
K24220 MYH1s; myosin heavy chain 1/2/3/4/8/13/7B/15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948813.1 True 6061 mRNA 0.53 41 9030493 9049651

Neighbor

gene id symbol gene type direction distance location
LOC110495028 LOC106593387 coding upstream 45704 8964809 ~ 8984789 (+)
LOC110485385 LOC106564166 coding upstream 92372 8842569 ~ 8938121 (+)
LOC110495027 LOC106593382 coding upstream 121569 8889782 ~ 8908924 (+)
LOC110494879 NA coding upstream 194074 8832523 ~ 8836419 (+)
LOC110485370 LOC106564160 coding upstream 209330 8817375 ~ 8821163 (+)
LOC110519048 LOC106593387 coding downstream 36541 9086192 ~ 9109227 (+)
LOC110513772 LOC106593162 coding downstream 102485 9152136 ~ 9219692 (+)
LOC110485387 LOC106593109 coding downstream 184743 9234394 ~ 9247725 (+)
LOC110494875 LOC106586284 coding downstream 211007 9260658 ~ 9273973 (+)
LOC110487204 LOC106593073 coding downstream 231777 9281428 ~ 9295974 (+)
G1418171 NA non-coding upstream 20009 8954672 ~ 9010484 (+)
G1418175 NA non-coding upstream 35889 8987828 ~ 8994604 (+)
G1418141 NA non-coding upstream 161895 8855787 ~ 8868598 (+)
G1418097 NA non-coding upstream 221163 8782508 ~ 8809330 (+)
G1418184 NA non-coding downstream 8972 9058623 ~ 9084743 (+)
G1418211 NA non-coding downstream 123445 9173096 ~ 9219467 (+)
G1418255 NA non-coding downstream 207930 9257581 ~ 9258140 (+)
G1418270 NA non-coding downstream 250671 9300322 ~ 9355452 (+)
LOC110485368 LOC105027472 other upstream 239772 8761682 ~ 8790721 (+)
G1418037 LOC106594248 other upstream 449342 8578605 ~ 8581151 (+)
LOC110516831 LOC106593980 other upstream 540212 8452099 ~ 8491706 (+)
LOC110499479 ubl5 other upstream 638012 8384381 ~ 8392496 (+)
G1417938 NA other upstream 659983 8369841 ~ 8370510 (+)
LOC110510627 LOC106593081 other downstream 254916 9304567 ~ 9515031 (+)
LOC110493376 LOC106564189 other downstream 539438 9581609 ~ 9592897 (+)

Expression


Co-expression Network