LOC110485387 (LOC106593109)


Basic Information

Item Value
gene id LOC110485387
gene name LOC106593109
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 9234394 ~ 9247725 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948836.1
CAACGATAAGGCAACAACTTCCTGTTTGTCTGCGCTCTCAGGCCAGAGCAATCGAATGTCGACGTAGATCTCCAGTCATAACATCCGCTAGGGAAGTCGAGATAACCATGGATCTACACTAGAATAAACAATTACAAGCCCAAAAGGATTCAGAAATGGATTTTGGCGAGAACGCCGGGTCTGAGTCGGAATCAGACTACCTTCCTAGTCCCACTGCCCCAGAACCTGAACCCAATGTGACTgtgaaggaagaggaagaggagggacatAGTGACATGGTTGACCCAGACCACCTCTCAGGTCTCGCCGCGGCAGAAAGACCCAGATTTAATATGATTatcaaagaagaggaggaggaggaagatgatgaaGCAGAAGCAGAGGAAGATGAAATGGTTTACCCGGGAGACATGATAAAGTTGGACCCAGACTATCTTCCAGAAGTGACCGTGGCAACAGGGCAACCACAGCACCAGAAGAAGAAGGCTGCGAAGAAACTTCATCCATGCCCTGACTGTGGGAAGACATTTGACAGACCATCACACCTAGAGAGACATGAGAATACCCACACCAGAATCAAGAAGCTGGCCCCCGACTACACTTGTTCTTACTGTGGCAAGATCTTCGCTAAACCGTCAAAGCTTGCTCGGCACGAGCGAGGacacaccggagagaaaccgTACTCTTGCTGCAAGTGCGGGAAGTGCTTCGCCGAGCCAGGGCACCGGAAGAGCCACGAgttgacgcacaatgaagagagacCGTACACCTGCGCCGACTGCGGGATAGGCTTCTTCAACCAGTCCAAGCTGCAACGGCACCAACGCACACACACGGGTGAGAAACCGTACTGCTGCACCGAATGTGGGAAGACCTTTGCTCGGTCAGGAGGCCTAAAGACTCACTGGCTAAGCCACACTGGAGAGAGACCATACCTCTGCTCcgactgtgggaaaagcttctTCAGCTCTGGGGACCTGAAAGTCCACCACTTGACCCATACCGGAGAGAAACCACACTGCTGCTCCGTGTGTGGGAAGGGTTTCGCGCAGAGGGGGAACATGCGGGCTCATGAACGGTCTCACTCGGGGGAAAGGCCTTACAGCTGTGCCGACTGCGGGGCCAACTTCGCCCATTCTAACTATTTAAAGATACACCGGCGCATTCACACGGGAGAGAGACCCTTCCCTTGCCCTGTCTGCGGCAAGAGGTTTATTCTATCCGGGCACCTCGGAAGACACCAGAAAACACACATACCCAAAAACAACACTTAGGAGAACACACATATCCAaacacacacggggacacactCATGAGCTTACTGAAGTATATTTTATTTGCATATAATCATGAACTACAATGAAACGGATTtagaacaaaaaataaaatacatggtAAAAGTCCTGAGAGAGCGAGGGTAAGGGATGCTCCCCCGTGAAGCTCCGCCCTCAACACTTCTCTTTCcatactgtgtcccaaatgacaccctgttccctatatggtgcactaccgGGTCAAAGGTCAAACCTATATAGAGCAGAGGTTGCCCATTGGCCTGTTCCACTGTTTTAATCTAAACATTGTATAGAATTTATTTGGcaggttgttgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatagtgtgtctTTGTCCTGAACTTTTTTGGTGGTTTTCATAATGTGAGAGCTCTGGTGAGTAAGGTTTCTATATTGTAGTTAGTTACCTGTAAACCACAGTTTCGGCCTCTCCTGATAGGCAAAGTCTCTTCAGATAATTTAAGcacgactttttccacattttgttacgttacagccttgttctaaaatggattaaattgccccccccccctcaatctatacacaataccccataatgacaaagcaaaaaggcctgtctcac
>XM_036948837.1
TTGTGTAGCATCACCACTATCCATCTTGTTTAGCGTCTCTTCTCTCCTTGTGTCTATGATAATACAATCACATGTAAACTAGAGTGTAACGGTCAAAAACCTGCATTTGTAACACAATTCATCTTTGAAGTGAGCCGATCTACGCCCCCTGTTTAAAGAGATAACCATGGATCTACACTAGAATAAACAATTACAAGCCCAAAAGGATTCAGAAATGGATTTTGGCGAGAACGCCGGGTCTGAGTCGGAATCAGACTACCTTCCTAGTCCCACTGCCCCAGAACCTGAACCCAATGTGACTgtgaaggaagaggaagaggagggacatAGTGACATGGTTGACCCAGACCACCTCTCAGGTCTCGCCGCGGCAGAAAGACCCAGATTTAATATGATTatcaaagaagaggaggaggaggaagatgatgaaGCAGAAGCAGAGGAAGATGAAATGGTTTACCCGGGAGACATGATAAAGTTGGACCCAGACTATCTTCCAGAAGTGACCGTGGCAACAGGGCAACCACAGCACCAGAAGAAGAAGGCTGCGAAGAAACTTCATCCATGCCCTGACTGTGGGAAGACATTTGACAGACCATCACACCTAGAGAGACATGAGAATACCCACACCAGAATCAAGAAGCTGGCCCCCGACTACACTTGTTCTTACTGTGGCAAGATCTTCGCTAAACCGTCAAAGCTTGCTCGGCACGAGCGAGGacacaccggagagaaaccgTACTCTTGCTGCAAGTGCGGGAAGTGCTTCGCCGAGCCAGGGCACCGGAAGAGCCACGAgttgacgcacaatgaagagagacCGTACACCTGCGCCGACTGCGGGATAGGCTTCTTCAACCAGTCCAAGCTGCAACGGCACCAACGCACACACACGGGTGAGAAACCGTACTGCTGCACCGAATGTGGGAAGACCTTTGCTCGGTCAGGAGGCCTAAAGACTCACTGGCTAAGCCACACTGGAGAGAGACCATACCTCTGCTCcgactgtgggaaaagcttctTCAGCTCTGGGGACCTGAAAGTCCACCACTTGACCCATACCGGAGAGAAACCACACTGCTGCTCCGTGTGTGGGAAGGGTTTCGCGCAGAGGGGGAACATGCGGGCTCATGAACGGTCTCACTCGGGGGAAAGGCCTTACAGCTGTGCCGACTGCGGGGCCAACTTCGCCCATTCTAACTATTTAAAGATACACCGGCGCATTCACACGGGAGAGAGACCCTTCCCTTGCCCTGTCTGCGGCAAGAGGTTTATTCTATCCGGGCACCTCGGAAGACACCAGAAAACACACATACCCAAAAACAACACTTAGGAGAACACACATATCCAaacacacacggggacacactCATGAGCTTACTGAAGTATATTTTATTTGCATATAATCATGAACTACAATGAAACGGATTtagaacaaaaaataaaatacatggtAAAAGTCCTGAGAGAGCGAGGGTAAGGGATGCTCCCCCGTGAAGCTCCGCCCTCAACACTTCTCTTTCcatactgtgtcccaaatgacaccctgttccctatatggtgcactaccgGGTCAAAGGTCAAACCTATATAGAGCAGAGGTTGCCCATTGGCCTGTTCCACTGTTTTAATCTAAACATTGTATAGAATTTATTTGGcaggttgttgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatagtgtgtctTTGTCCTGAACTTTTTTGGTGGTTTTCATAATGTGAGAGCTCTGGTGAGTAAGGTTTCTATATTGTAGTTAGTTACCTGTAAACCACAGTTTCGGCCTCTCCTGATAGGCAAAGTCTCTTCAGATAATTTAAGcacgactttttccacattttgttacgttacagccttgttctaaaatggattaaattgccccccccccctcaatctatacacaataccccataatgacaaagcaaaaaggcctgtctcac
>TU1622314
TAACATCCGCTAGGGAAGTCGAGATAACCATGGATCTACACTAGAATAAACAATTACAAGCCCAAAAGGATTCAGAAATGGATTTTGGCGAGAACGCCGGGTCTGAGTCGGAATCAGACTACCTTCCTAGTCCCACTGCCCCAGAACCTGAACCCAATGTGACTgtgaaggaagaggaagaggagggacatAGTGACATGGTTGACCCAGACCACCTCTCAGGTCTCGCCGCGGCAGAAAGACCCAGATTTAATATGATTatcaaagaagaggaggaggaggaagatgatgaaGCAGAAGCAGAGGAAGATGAAATGGTTTACCCGGGAGACATGATAAAGTTGGACCCAGACTATCTTCCAGAAGTGACCGTGGCAACAGGGCAACCACAGCACCAGAAGAAGAAGGCTGCGAAGAAACTTCATCCATGCCCTGACTGTGGGAAGACATTTGACAGACCATCACACCTAGAGAGACATGAGAATACCCACACCAGAATCAAGAAGCTGGCCCCCGACTACACTTGTTCTTACTGTGGCAAGATCTTCGCTAAACCGTCAAAGCTTGCTCGGCACGAGCGAGGacacaccggagagaaaccgTACTCTTGCTGCAAGTGCGGGAAGTGCTTCGCCGAGCCAGGGCACCGGAAGAGCCACGAgttgacgcacaatgaagagagacCGTACACCTGCGCCGACTGCGGGATAGGCTTCTTCAACCAGTCCAAGCTGCAACGGCACCAACGCACACACACGGGTGAGAAACCGTACTGCTGCACCGAATGTGGGAAGACCTTTG

Function

NR:

description
gastrula zinc finger protein XlCGF17.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948836.1 False 1913 mRNA 0.48 4 9234394 9247725
XM_036948837.1 False 1972 mRNA 0.48 4 9234670 9247725
TU1622314 True 801 TUCP 0.52 4 9234472 9246691

Neighbor

gene id symbol gene type direction distance location
LOC110513772 LOC106593162 coding upstream 14702 9152136 ~ 9219692 (+)
LOC110519048 LOC106593387 coding upstream 125167 9086192 ~ 9109227 (+)
LOC110513340 LOC106593387 coding upstream 184743 9030493 ~ 9049651 (+)
LOC110495028 LOC106593387 coding upstream 249605 8964809 ~ 8984789 (+)
LOC110485385 LOC106564166 coding upstream 296273 8842569 ~ 8938121 (+)
LOC110494875 LOC106586284 coding downstream 12933 9260658 ~ 9273973 (+)
LOC110487204 LOC106593073 coding downstream 33703 9281428 ~ 9295974 (+)
LOC110510627 LOC106593081 coding downstream 186486 9304567 ~ 9515031 (+)
LOC110493376 LOC106564189 coding downstream 333884 9581609 ~ 9592897 (+)
LOC110510389 LOC106592846 coding downstream 352609 9600334 ~ 9685183 (+)
G1418211 NA non-coding upstream 14927 9173096 ~ 9219467 (+)
G1418184 NA non-coding upstream 149651 9058623 ~ 9084743 (+)
G1418179 NA non-coding upstream 167612 9009704 ~ 9066782 (+)
G1418171 NA non-coding upstream 223910 8954672 ~ 9010484 (+)
G1418175 NA non-coding upstream 239790 8987828 ~ 8994604 (+)
G1418255 NA non-coding downstream 9856 9257581 ~ 9258140 (+)
G1418270 NA non-coding downstream 52597 9300322 ~ 9355452 (+)
G1418120 NA non-coding downstream 53547 9301272 ~ 9356785 (+)
LOC110485368 LOC105027472 other upstream 443673 8761682 ~ 8790721 (+)
G1418037 LOC106594248 other upstream 653243 8578605 ~ 8581151 (+)
LOC110516831 LOC106593980 other upstream 744113 8452099 ~ 8491706 (+)
LOC110499479 ubl5 other upstream 841913 8384381 ~ 8392496 (+)
G1418488 LOC106564225 other downstream 690748 9938473 ~ 9939331 (+)

Expression


Co-expression Network