LOC110510389 (LOC106592846)


Basic Information

Item Value
gene id LOC110510389
gene name LOC106592846
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 9600334 ~ 9685183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948845.1
GGCTGGACTGCTGAAAACTAAAGTGTGGGCTCTACGATCAGGTTTCATTATTTTCCAGTCGTCTGGCTGCGTCTGGAGTGGCAGGAAATGGACCCATCTAAGgaggtaGCTGCCTCTGAGAAGGAAAGGACACCAGCaggggaggagagtgaagagCTGTCCAGCGAACTCCCCAGCACCTCTTCTGGAATGTTGACCCTGTCTAGAGAGAAGCGTTGTGATCTATTGACTGAGATCTCTAGGCtggaggaggagctggaggagctgaAGGTAGAGGTCAACAGGGATGAGCAGTCTACCAGCACCTCTTCTGGATGGTTGACCCCATCTGGAGAGAAGCATTGTTTTCTGGAGAATGAGATCTCTAAGCTGAAGGAGAGGCTGGAGGTGCTGAAGAAAACATTGGATGTTCCAGCTCTGCTGCTGACCACTCTGGAGGAGATGAACCCACACGAGCTGAAGACATTTCAGTGGTATCTGTATAGGCCCTGGCTGCCTGGCTGTCCTCTCATCCCAGAGAGTCAGCTGGAGAACactgacagacaggacacagtGGATCAGATGGTGAAGAGATACGGCCCTGAGAGAGCTGTGGGGAACATGGGGAGGATCCTGAGGGGGATGAATCGGGATGATCTGGCAGAGAGGTTACAGAGAGATCACACTAGAGGCACTGCCTCACCCTCTCACTTGTCCTTATTCCAACTCAGGCCCAAATCCTTCTGTTACTCTTCATGGCCTCCTTTCactccagctcctcctcctccttccttccctggCTCATCTAAGGAGTTGTGGTCGTTAACTTCAGCTGGTAGCTCAGGACAGCTCAGCTCACAGAGATCCTCCACGTTGGATGTTCCAGCTCTGCTGCTGACCACTCTGGAGGAGCTCACTGAAGAACAGCTGAAGATATTTCAGTCTAACCTGACTAGTGGCAGGATGTTAGACTTTCCTCCCATCCCAGAGAGCCAGCTGGAGAACACTGACAGACAGGTCACAGTGGATCAGATGGTGGAGAGATACGACCCTGAGAGAGCTGTGAAGATCACACTTGTGAACCTGAGGTGGATGAATCTGGATGATCTGGCAGAGAAGTTAGAGCGATATCACACTAGAGCTGTATCTAcaacagaaacaaaatggtggaGCAACTCATCAGACACTGGcaatgatgaagagagagagaagaaacatgTCCATCTGTCTGGACGTTCTAGAGCCTTGGACAGAGAGGCAGCAGGCAGCAAAGACACTGGAATCACAAAGGACAAATATGAGCTGGTCacgAAACCTGCAGATAAGAAAAGAGAAGCTCTGCTGCTGGCCACTCTGGAGGAGCTGAGCACAGACGAGCTGAAGATATTTCAGCAGGAACTGACTCTAAGCAAACAGCTTCCACCTTACCTGACTGGCTTTCCTCCCATCCCAAAAACTCAGCTGAAGAACAATGACAGACGGGTCATAGTGGATCAGATGCTGAAGAGGTACGGCCCTGAGGGAGTTGTGGAGATCACACTGAGGATCCTGAGGAGGATGAACCGGGAAGATCTGGCAGAGAAGTTCGAGAGATATCACAGACGAGATTCCAGCCCTGTCTTCTACCAAGCCCTCTATCCACCCAGTGTTGTCATGGAGAAGCCTTCCAGGTTCCTTCCCTCCTCAGTACAACACAGCTTACAGAGACCCCAAATATTGACTGTTCCAGCTCTGCTGCTGACCAGTCTGGAGGAACTCACTGAAGAACAGCTGAAGAAATTTCAGTCTCACCTGACTAGTGGCAGGATGTTAGACTTTCCTCCCATCCCAGAGAGCCAGCTGGAGAACactgacagacaggacacagtGGATCAGATGGTGAAGAGATACGACCATGAGGGAGCTGTGAGGATCACACTGAGGATCCTGAGGGGGATGAATCTGGATGATCTGGCAGAGAAGTTAGAGATATATCACAGTAGAGgaaagaaaaggagaacaAGTGAGGAACCATCCTGGCCTGGTCTAGTTTCCAGGCGCGAAAAGATTGAGGAGCATTGTGTCCCATTGACTGGCAGAGCCCCGTTGTTCATCAAACATAAGAAAATCCCAAAGCTAGAGATGGACATTTCAACCATCCTAGGGAGCCAACTGAAGATGGCTAACAGTCTCAACACAGAGGTATATGTGAACACCCAGGATAACACCCAGGATAACACCCAGGAGAACACCCAGGAGAACACCCAGGAGAACACCCAGGAGAACACCCAGGAGAACACCCAGGAGAATACCCAGGAGAATACCCAGGAGAACACCCAGGAGAACACCCAGGAGAATACCCAGGAGAATACCCAGGAGAATACCCAGGAGAACACCCAGAGGATTGATGATGAGGAGTTGGGAAGAGAAAGGGATTCTCCTCTTTTCCTGGATCACCATCACATGAGTTCTCCAGATGAATTTACACCTGAAATCCATGATCAGGACAACAGGGGAGAGTACCGGTTCCAGTGCCCCAGTGCAGGTCTGTTCCAGTGCAGTATAACAGGCCTGGTGTtcaggatggagggagaaggagaggtgctCTATAGGACAGTCCCCTGGGACAGGAGGCTTCTATCCCAGAGAGGCAAGAGACCTGCAGGACCTCTGTTCATGTTTAGATGCCTTAAGGGGTCTGTCAGTCAACTACACCTCCCACAGTGTGAGATCTACAATAGTGGTGGATGTGACTTCCTGTCTGTAGCCCATGTGACTGATGATGACATCATTGAGTTTATCCCTCCTCTTgagacaacagacacacatgTCATAATAAACATCAGTGGATTCTCTGCTTATGGTGAAGTCAAGGATGAAGACTCTCCCATCGTTCCTATAAGAGCACTTGTCTTGTTGTTCTACAAGCCCCCAGATGTTCCTAAAAAGAGGTCCATCCTGAATGTGTTGTTGCTTCCCAGAAATGTTGTCATCAGGGAGGtgcaggaggagtggagaagaaggAATGGAGACAAATACATCTATATTGAAACAAATTCTCACTGCCAACTAACTCCAAATAAAGAATACGAGCTCTTCACAGATCTTACAGATGAATATCTAATTCAACCAAAGGATGCAGAATTTGTGGATTTTGAATTCTATGAAAACTACATCCCAACATTTCAGTTGTTCATACAAACTGTTGTTGAGCAAGTTCATCTTCTTCTGAAAGACAATGGTGGTGAAGAATCTGTCTGGGAAAGACTTGTCTGGCTTCCAGAATCACCAACAGATGTCCCCTCTACAGTTTCAGCTGTTTCCCCTGCAGACCCTCCTGCCAACCCCTCTGCCCCCCCTGGTAGAGCCTTCATCAGAAGACACAGGATGGCTCTAGAGACTCGCCTGGGACTCTTACAGCCCATATTCCTGCGTCTCCAGGATCATGGAGTTCTGATTcacgaggagagggaggaggtggacagCAAATCCACCAAGACCCTACAGAACCAAGCCCTGCTGGACATGGTGGTAAGGAAGGGGTCTCGCGCCCAGGAACACTTCTACCAGGTCCTGAAGGAAGTAGATCCCTGCCTGGTCGAAGACCTGGAAGAGCAGACAGTCTGAGAGGTAACCATGGATACAACAGCATCAGGATATATTATATCACTATACTAATACATGCTCTGAAAGAGACAGACAGTCTGAGACAGGTAGCCATGGATACAACCTCACAACCTCAGAAGATATCAAAACATTtatcagagacagagagcagcacTTTGAGGAGGAGCCATCCTGATCAGAGGTGGTTGGTGTGTAACGTGATTGGACACCATTCTCACCAGCACTCCCATCAGCCTGTAGTTTACTATACAAGCCCCAGGTCTCAGGCAAGATGACATCACTGTGAGGCTACTGTCTACCAGACAACCTACCTGTGTTACTCTGGTACACTGGCTATAAACAACAAGATTTTTGAATTTCTATCTGGAACATGGTGAATGTTGAATCATCTTGGACAGGTCTCGGACAACAACATGTGAGACTTAACATCTACCAGACAACTGACTCGTACTGGACAGCTGTACTGGCTGAACACAAGATATATCTCTGTTTAGAAAtagtgtatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggccttcatcataggtacacttcaac
>XM_036948846.1
GGCTGGACTGCTGAAAACTAAAGTGTGGGCTCTACGATCAGGTTTCATTATTTTCCAGTCGTCTGGCTGCGTCTGGAGTGGCAGGAAATGGACCCATCTAAGgaggtaGCTGCCTCTGAGAAGGAAAGGACACCAGCaggggaggagagtgaagagCTGTCCAGCGAACTCCCCAGCACCTCTTCTGGAATGTTGACCCTGTCTAGAGAGAAGCGTTGTGATCTATTGACTGAGATCTCTAGGCtggaggaggagctggaggagctgaAGGTAGAGGTCAACAGGGATGAGCAGTCTACCAGCACCTCTTCTGGATGGTTGACCCCATCTGGAGAGAAGCATTGTTTTCTGGAGAATGAGATCTCTAAGCTGAAGGAGAGGCTGGAGGTGCTGAAGAAAACATTGGATGTTCCAGCTCTGCTGCTGACCACTCTGGAGGAGATGAACCCACACGAGCTGAAGACATTTCAGTGGTATCTGTATAGGCCCTGGCTGCCTGGCTGTCCTCTCATCCCAGAGAGTCAGCTGGAGAACactgacagacaggacacagtGGATCAGATGGTGAAGAGATACGGCCCTGAGAGAGCTGTGGGGAACATGGGGAGGATCCTGAGGGGGATGAATCGGGATGATCTGGCAGAGAGGTTACAGAGAGATCACACTAGAGGCACTGCCTCACCCTCTCACTTGTCCTTATTCCAACTCAGGCCCAAATCCTTCTGTTACTCTTCATGGCCTCCTTTCactccagctcctcctcctccttccttccctggCTCATCTAAGGAGTTGTGGTCGTTAACTTCAGCTGGTAGCTCAGGACAGCTCAGCTCACAGAGATCCTCCACGTTGGATGTTCCAGCTCTGCTGCTGACCACTCTGGAGGAGCTCACTGAAGAACAGCTGAAGATATTTCAGTCTAACCTGACTAGTGGCAGGATGTTAGACTTTCCTCCCATCCCAGAGAGCCAGCTGGAGAACACTGACAGACAGGTCACAGTGGATCAGATGGTGGAGAGATACGACCCTGAGAGAGCTGTGAAGATCACACTTGTGAACCTGAGGTGGATGAATCTGGATGATCTGGCAGAGAAGTTAGAGCGATATCACACTAGAGCTGTATCTAcaacagaaacaaaatggtggaGCAACTCATCAGACACTGGcaatgatgaagagagagagaagaaacatgTCCATCTGTCTGGACGTTCTAGAGCCTTGGACAGAGAGGCAGCAGGCAGCAAAGACACTGGAATCACAAAGGACAAATATGAGCTGGTCacgAAACCTGCAGATAAGAAAAGAGAAGCTCTGCTGCTGGCCACTCTGGAGGAGCTGAGCACAGACGAGCTGAAGATATTTCAGCAGGAACTGACTCTAAGCAAACAGCTTCCACCTTACCTGACTGGCTTTCCTCCCATCCCAAAAACTCAGCTGAAGAACAATGACAGACGGGTCATAGTGGATCAGATGCTGAAGAGGTACGGCCCTGAGGGAGTTGTGGAGATCACACTGAGGATCCTGAGGAGGATGAACCGGGAAGATCTGGCAGAGAAGTTCGAGAGATATCACAGACGAGATTCCAGCCCTGTCTTCTACCAAGCCCTCTATCCACCCAGTGTTGTCATGGAGAAGCCTTCCAGGTTCCTTCCCTCCTCAGTACAACACAGCTTACAGAGACCCCAAATATTGACTGTTCCAGCTCTGCTGCTGACCAGTCTGGAGGAACTCACTGAAGAACAGCTGAAGAAATTTCAGTCTCACCTGACTAGTGGCAGGATGTTAGACTTTCCTCCCATCCCAGAGAGCCAGCTGGAGAACactgacagacaggacacagtGGATCAGATGGTGAAGAGATACGACCATGAGGGAGCTGTGAGGATCACACTGAGGATCCTGAGGGGGATGAATCTGGATGATCTGGCAGAGAAGTTAGAGATATATCACAGTAGAGgaaagaaaaggagaacaAGTGAGGAACCATCCTGGCCTGGTCTAGTTTCCAGGCGCGAAAAGATTGAGGAGCATTGTGTCCCATTGACTGGCAGAGCCCCGTTGTTCATCAAACATAAGGATAACACCCAGGATAACACCCAGGAGAACACCCAGGAGAACACCCAGGAGAACACCCAGGAGAACACCCAGGAGAACACCCAGGAGAATACCCAGGAGAATACCCAGGAGAACACCCAGGAGAACACCCAGGAGAATACCCAGGAGAATACCCAGGAGAATACCCAGGAGAACACCCAGAGGATTGATGATGAGGAGTTGGGAAGAGAAAGGGATTCTCCTCTTTTCCTGGATCACCATCACATGAGTTCTCCAGATGAATTTACACCTGAAATCCATGATCAGGACAACAGGGGAGAGTACCGGTTCCAGTGCCCCAGTGCAGGTCTGTTCCAGTGCAGTATAACAGGCCTGGTGTtcaggatggagggagaaggagaggtgctCTATAGGACAGTCCCCTGGGACAGGAGGCTTCTATCCCAGAGAGGCAAGAGACCTGCAGGACCTCTGTTCATGTTTAGATGCCTTAAGGGGTCTGTCAGTCAACTACACCTCCCACAGTGTGAGATCTACAATAGTGGTGGATGTGACTTCCTGTCTGTAGCCCATGTGACTGATGATGACATCATTGAGTTTATCCCTCCTCTTgagacaacagacacacatgTCATAATAAACATCAGTGGATTCTCTGCTTATGGTGAAGTCAAGGATGAAGACTCTCCCATCGTTCCTATAAGAGCACTTGTCTTGTTGTTCTACAAGCCCCCAGATGTTCCTAAAAAGAGGTCCATCCTGAATGTGTTGTTGCTTCCCAGAAATGTTGTCATCAGGGAGGtgcaggaggagtggagaagaaggAATGGAGACAAATACATCTATATTGAAACAAATTCTCACTGCCAACTAACTCCAAATAAAGAATACGAGCTCTTCACAGATCTTACAGATGAATATCTAATTCAACCAAAGGATGCAGAATTTGTGGATTTTGAATTCTATGAAAACTACATCCCAACATTTCAGTTGTTCATACAAACTGTTGTTGAGCAAGTTCATCTTCTTCTGAAAGACAATGGTGGTGAAGAATCTGTCTGGGAAAGACTTGTCTGGCTTCCAGAATCACCAACAGATGTCCCCTCTACAGTTTCAGCTGTTTCCCCTGCAGACCCTCCTGCCAACCCCTCTGCCCCCCCTGGTAGAGCCTTCATCAGAAGACACAGGATGGCTCTAGAGACTCGCCTGGGACTCTTACAGCCCATATTCCTGCGTCTCCAGGATCATGGAGTTCTGATTcacgaggagagggaggaggtggacagCAAATCCACCAAGACCCTACAGAACCAAGCCCTGCTGGACATGGTGGTAAGGAAGGGGTCTCGCGCCCAGGAACACTTCTACCAGGTCCTGAAGGAAGTAGATCCCTGCCTGGTCGAAGACCTGGAAGAGCAGACAGTCTGAGAGGTAACCATGGATACAACAGCATCAGGATATATTATATCACTATACTAATACATGCTCTGAAAGAGACAGACAGTCTGAGACAGGTAGCCATGGATACAACCTCACAACCTCAGAAGATATCAAAACATTtatcagagacagagagcagcacTTTGAGGAGGAGCCATCCTGATCAGAGGTGGTTGGTGTGTAACGTGATTGGACACCATTCTCACCAGCACTCCCATCAGCCTGTAGTTTACTATACAAGCCCCAGGTCTCAGGCAAGATGACATCACTGTGAGGCTACTGTCTACCAGACAACCTACCTGTGTTACTCTGGTACACTGGCTATAAACAACAAGATTTTTGAATTTCTATCTGGAACATGGTGAATGTTGAATCATCTTGGACAGGTCTCGGACAACAACATGTGAGACTTAACATCTACCAGACAACTGACTCGTACTGGACAGCTGTACTGGCTGAACACAAGATATATCTCTGTTTAGAAAtagtgtatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggccttcatcataggtacacttcaac
>TU1622481
TCTCTAAGCTGAAGGAGAGGCTGGAGGTGCTGAAGAAAACATTGGATGTTCCAGCTCTGCTGCTGACCACTCTGGAGGAGATGAACCCACACGAGCTGAAGACATTTCAGTGGTATCTGTATAGGCCCTGGCTGCCTGGCTGTCCTCTCATCCCAGAGAGTCAGCTGGAGAACactgacagacaggacacagtGGATCAGATGGTGAAGAGATACGGCCCTGAGAGAGCTGTGGGGAACATGGGGAGGATCCTGAGGGGGATGAATCGGGATGATCTGGCAGAGAGGTTACAGAGAGATCACACTAGAGGCACTGCCTCACCCTCTCACTTGTCCTTATTCCAACTCAGGCCCAAATCCTTCTGTTACTCTTCATGGCCTCCT

Function

NR:

description
uncharacterized protein LOC110485388

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948845.1 False 4185 mRNA 0.49 22 9600334 9685183
XM_036948846.1 False 4089 mRNA 0.49 22 9600334 9685183
TU1622481 True 383 TUCP 0.53 3 9613831 9614948

Neighbor

gene id symbol gene type direction distance location
LOC110493376 LOC106564189 coding upstream 8023 9581609 ~ 9592897 (+)
LOC110510627 LOC106593081 coding upstream 143835 9304567 ~ 9515031 (+)
LOC110487204 LOC106593073 coding upstream 304360 9281428 ~ 9295974 (+)
LOC110494875 LOC106586284 coding upstream 326361 9260658 ~ 9273973 (+)
LOC110485387 LOC106593109 coding upstream 352609 9234394 ~ 9247725 (+)
mvb12a LOC106564207 coding downstream 62125 9747308 ~ 9772113 (+)
LOC110518985 LOC106593960 coding downstream 90296 9775479 ~ 9780712 (+)
LOC110517298 LOC106564086 coding downstream 100610 9785793 ~ 9804783 (+)
LOC110516202 LOC106593004 coding downstream 123944 9809127 ~ 9871028 (+)
LOC110485424 LOC106592905 coding downstream 204318 9889501 ~ 9924663 (+)
G1418391 NA non-coding upstream 6142 9593775 ~ 9594192 (+)
G1418367 NA non-coding upstream 31955 9555595 ~ 9568379 (+)
G1418363 NA non-coding upstream 48458 9551628 ~ 9551876 (+)
G1418360 NA non-coding upstream 50247 9549864 ~ 9550087 (+)
G1418411 NA non-coding downstream 5946 9691129 ~ 9691396 (+)
G1418420 NA non-coding downstream 8415 9693598 ~ 9694651 (+)
G1418430 NA non-coding downstream 20347 9705530 ~ 9708234 (+)
G1418440 NA non-coding downstream 58004 9743187 ~ 9744594 (+)
G1418442 NA non-coding downstream 84015 9769198 ~ 9769852 (+)
LOC110519048 LOC106593387 other upstream 491119 9086192 ~ 9109227 (+)
G1418488 LOC106564225 other downstream 253290 9938473 ~ 9939331 (+)
G1418476 LOC106592804 other downstream 347664 10032847 ~ 10034985 (+)
G1418503 NA other downstream 351782 10036965 ~ 10057136 (+)
G1418740 NA other downstream 979831 10665014 ~ 10666546 (+)
G1418812 NA other downstream 1205856 10891039 ~ 10893394 (+)
G1418395 NA non-coding upstream 8146 9605231 ~ 9605685 (+)
G1418394 NA non-coding upstream 10083 9603175 ~ 9603748 (+)
G1418397 NA non-coding downstream 3524 9618472 ~ 9654573 (+)
G1418400 NA non-coding downstream 13830 9628778 ~ 9634519 (+)
G1418407 NA non-coding downstream 51426 9666374 ~ 9666579 (+)

Expression


Co-expression Network