mvb12a (LOC106564207)


Basic Information

Item Value
gene id mvb12a
gene name LOC106564207
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 9747308 ~ 9772113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948850.1
GGTGCTTGATGGGAATAGTAGTCATAGAATCTCCTGTATTTCCTGGAAAGGAGACGAGGAAAAGTCATAAGAAGTTCTTGCTCGCCTCTAAAAAGTTGTTTACCTGACTTCATCTACGGTGTAAAGCGAGAAAGGTTGAAACGAAAAACAGAatGTCTCTGATGGAGCACGGTGGTGGCGCCCACAACAGGCCGGTGACGGCAGTGGCCTGGGCCTCCAACAGCAGCACCTGTCCCAAAGACTTCAACCTGatCAGTATAACTGAGGATGGAGCTGCTGCAAACTTCACACGGAGCTTCGCCATGAAGGCTGGCTACTACCTCTGCTACAGCAAGGACATGTCAGGTGGTATGGTAGTATCAGATGTCCAGGTGATCTCAGACAAGGAGACTGTTCCTCATGGGTACTGTTACATACCTGAACACCTGGAGCCTAgggcCTCCGTGTCTAAGAAGAAGCGTGTGTGTGTCCGCATGGTGCCAGTGGGCGGTGTGGAGACTGCTGTACTGGACATCAAACTGACTGCTAAGACTAGGAGGATGCTGCAACACTACACCTGCTTgggggaCATGCATGGCTATGTGATGTGGTGTAAGAAGGGGCCCTTCTCCAGCCCTCTACCCCAGGCAAAGCCTCGCAGCCTCAGCCTTGACCTCCGTCAGCTCTCGCTGGACCAGAACCCCCCTCCGCTACCCCTCAGACCCAGCAACGCTCCACCCATGCCCCCTGGCAGGAAGCTCAGCCATCGCCGCAGCAACCTCCAATTGAACGATGCTGTGGACAAAGTGGTTGACAGCAGCAACATCTACGGCATCTCAGccaTAGATGGTGTTCCCTTCACTCTACACCCCAAGTTCAAGACCCAAACGAACGGCACGACTCCAACAAACACTCTGAAATACCATGagtctaaactctctctctctcctccatgagtctaaactgtctct
>XM_036948849.1
GTGCTTGATGGGAATAGTAGTCATAGAATCTCCTGTATTTCCTGGAAAGGAGACGAGGAAAAGTCATAAGAAGTTCTTGCTCGCCTCTAAAAAGTTGTTTACCTGACTTCATCTACGGTGTAAAGCGAGAAAGGTTGAAACGAAAAACAGAatGTCTCTGATGGAGCACGGTGGTGGCGCCCACAACAGGCCGGTGACGGCAGTGGCCTGGGCCTCCAACAGCAGCACCTGTCCCAAAGACTTCAACCTGatCAGTATAACTGAGGATGGAGCTGCTGCAAACTTCACACGGAGCTTCGCCATGAAGGCTGGCTACTACCTCTGCTACAGCAAGGACATGTCAGGTGGTATGGTAGTATCAGATGTCCAGGTGATCTCAGACAAGGAGACTGTTCCTCATGGGTACTGTTACATACCTGAACACCTGGAGCCTAgggcCTCCGTGTCTAAGAAGAAGCGTGTGTGTGTCCGCATGGTGCCAGTGGGCGGTGTGGAGACTGCTGTACTGGACATCAAACTGACTGCTAAGACTAGGAGGATGCTGCAACACTACACCTGCTTgggggaCATGCATGGCTATGTGATGTGGTGTAAGAAGGGGCCCTTCTCCAGCCCTCTACCCCAGGCAAAGCCTCGCAGCCTCAGCCTTGACCTCCGTCAGCTCTCGCTGGACCAGAACCCCCCTCCGCTACCCCTCAGACCCAGCAACGCTCCACCCATGCCCCCTGGCAGGAAGCTCAGCCATCGCCGCAGCAACCTCCAATTGAACGATGCTGTGGACAAAGTGGTTGACAGCAGCAACATCTACGGCATCTCAGccaTAGATGGTGTTCCCTTCACTCTACACCCCAAGTTCAAGACCCAAACGAACGGCACGACTCCAACAAACACTCTGAACAACATTCGCATCAAGTCTGTCCAGGACATTgaaaatgagTACAACTACACTTTCACCGTGGAGGAAAACGCAGCCAAGAGAACCACATCGCTCACCACAGGAAGCACCTCTTAAGCACAATGACCTTTCATCTCCGACCTCAACAATGGCGGCCTGCTCGACCCACAACACTACGGAGGTCAATGTGATATGCCTGGGTCATGAAATGATAATCAATGTCCAAGTGCCTCGAAGATGACTGACTAGAACAGAAGTGTCATTCTACATTCCAGAGTACCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTtccattggttatacccacattcTTATTCCGTGTTCTAAACTCTTGCACATTTCATTCTCACGCCCCGTATATGTGGCCAGTTATATATGTGAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCTCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATGTTAGAGATGACTCTTTGACGGGGAAGAGAGCGTTGTATGGCAGGGCACGCTTGTTTCTCTCGTTAGAATAATGACAGGAACCTGTTGCGGTGTACCTGTTAACGTCAGGCTATTGATCTTCATCTTTATTGGGATGTTTAGGGACCAAACTAAATGTTGTTACACTTTCAATGTAAATAATGTTACTATTATGTCTCTGTGGTGAAACATGGGTCATTTCATGGTTAAAATATATAATAAGGAAGTATGGTTACCGGTCACTGGTTATATCTGTATATTGTGCCTtgcatgcaagtataaacacataAAGTACCAAATAGTTTGACGTGTACCGTTCTTATAAGGAGAGTTTGATATCCGTCACAGGGAGATAAAACATGTTAACACAGCAACTGCTGACACTTTATGCTCGGACTGATAGACACGCCCACTTTTCTGCATGTTCAAACAGGTGATTGGAGATTTGGTTTCCGTGTGTAACCCATAAGACCATGTGAACCTGCCAGTCTGCAGCTTTCACCTGTATCCACACTAGGTGCACCAGTCGACAGAAAAGTCCGGTTTTGGGGATTCAACTCGATCCGGAGTCGGGTGGATAGAAGATCCTGCAACCACGTTGTCAATTTGAATGCAAAACAGAGGTGACGTTTACATTTGTTATCTGCTTCCGCGGTGATCCGAGGCTACTCCAGCGTTCCattaaaacaaaaaaatgaaataa
>XR_005036798.1
GTGCTTGATGGGAATAGTAGTCATAGAATCTCCTGTATTTCCTGGAAAGGAGACGAGGAAAAGTCATAAGAAGTTCTTGCTCGCCTCTAAAAAGTTGTTTACCTGACTTCATCTACGGTGTAAAGCGAGAAAGGTTGAAACGAAAAACAGAatGTCTCTGATGGAGCACGGTGGTGGCGCCCACAACAGGCCGGTGACGGCAGTGGCCTGGGCCTCCAACAGCAGCACCTGTCCCAAAGACTTCAACCTGatCAGTATAACTGAGGATGGAGCTGCTGCAAACTTCACACGGAGCTTCGCCATGAAGGCTGGCTACTACCTCTGCTACAGCAAGGACATGTCAGGTGGTATGGTAGTATCAGATGTCCAGGTGATCTCAGACAAGGAGACTGTTCCTCATGGGTACTGTTACATACCTGAACACCTGGAGCCTAgggcCTCCGTGTCTAAGAAGAAGCGTGTGTGTGTCCGCATGGTGCCAGTGGGCGGTGTGGAGACTGCTGTACTGGACATCAAACTGACTGCTAAGACTAGGAGGATGCTGCAACACTACACCTGCTTgggggaCATGCATGGCTATGTGATGTGGTGTAAGAAGGGGCCCTTCTCCAGCCCTCTACCCCAGGCAAAGCCTCGCAGCCTCAGCCTTGACCTCCGTCAGCTCTCGCTGGACCAGAACCCCCCTCCGCTACCCCTCAGACCCAGCAACGCTCCACCCATGCCCCCTGGCAGGAAGCTCAGCCATCGCCGCAGCAACCTCCAATTGAACGATGCTGTGGACAAAGTGGTTGACAGCAGCAACATCTACGGCATCTCAGccaTAGATGGTGTTCCCTTCACTCTACACCCCAAGTTCAAGACCCAAACGAACGGCACGACTCCAACAAACACTCTGAACAACATTCGCATCAAGTCTGTCCAGGACATTgaaaatgagTACAACTACACTTTCACCGTGGAGGAAAACGCAGCCAAGAGAACCACATCGCTCACCACAGGAAGCACCTCTTAAGCACAATGACCTTTCATCTCCGACCTCAACAATGGCGGCCTGCTCGACCCACAACACTACGGAGGTCAATGTGATATGCCTGGGTCATGAAATGATAATCAATGTCCAAGTGCCTCGAAGATGACTGACTAGAACAGAAGTGTCATTCTACATTCCAGAGTACCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTtccattggttatacccacattcTTATTCCGTGTTCTAAACTCTTGCACATTTCATTCTCACGCCCCGTATATGTGGCCAGTTATATATGTGAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCTCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATGTTAGAGATGACTCTTTGACGGGGAAGAGAGCGTTGTATGGCAGGGCACGCTTGTTTCTCTCGTTAGAATAATGACAGGAACCTGTTGCGGTGTACCTGTTAACGTCAGGCTATTGATCTTCATCTTTATTGGGATGTTTAGGGACCAAACTAAATGTTGTTACACTTTCAATGTAAATAATGTTACTATTATGTCTCTGTGGTGAAACATGGGTCATTTCATGGTTAAAATATATAATAAGGAAGTATGGTTACCGGTCACTGGTTATATCTGTATATTGTGCCTtgcatgcaagtataaacacataAAGTACCAAATAGTTTGACGTGTACCGTTCTTATAAGGAGAGTTTGATATCCGTCACAGGGAGATAAAACATGTTAACACAGCAACTGCTGACACTTTATGCTCGGACTGATAGACACGCCCACTTTTCTGCATGTTCAAACAGGTGATTGGAGATTTGGTTTCCGTGTGTAACCCATAAGACCATGTGAACCTGCCAGTCTGCAGCTTTCACCTGTATCCACACTAGGTGCACCAGTCGACAGAAAAGTCCGGTTTTGGGGATTCAACTCGATCCGGAGTCGGGTGGATAGAAGATCCTGCAACCACGTTGTCAATTTGAATGCAAAACAGAGTATCTGGTCTGGGGATCATTCAGCTGGGGAAGACTGGAGCAGGGATGAGTGCAACCGGAAACACCAAAGAGGTGTTAATAGAAGAGTTCTCTTCTGAGTCTGTGACGATACAATGTGAAGATGTCCAAAGGATGAAGAGGACAGCTTCAGACACTACTGaaacagcaggaggaggagcagcaggaggaggtgcagcaggaggaggaggtgcagCATGCATAACAGAAGGTGTACTAGCAGCAGTACTAGAAGGAGTAGCAGGAGGAGAAGGAGTAGCAGCAACAGGAGCAACAGGTGTACTAGCAGCAGTACTAGGAGGAGTAGCAACAGGGCCAACAGAAGGTGTACTAGCAGCAGTACTAGGAGTTGTagcaggagaaggagaagcaGGAGTAACAGAAGGTGTACTAGCAGCAGTACTAGGAGGagaaggagcagcaggagaaggagaagcaGCAACAGAAGGTGTACTAGCAGTAGtagcaggagaaggagaaggagaagcaggAGAAGCAGCAACAGGAGCAACAGAAGGTGTACTAGCAGCAGTACTAGTAGGAGTAGCAGGAgaaggagcagcaggaggaggagcaggggaaggtgtagtagcagcagtactaggaggagtagcaggaggagcaGCAACAGGAGTATTGGTACTAGCTTTGGGAATACCAGCAGGAATAGCAGGAGCAGGAGTAGCAGCAGTTGCAGGAGTAGCATTTGCAGAGATTTTTCAAAAATGTACGCCTAAATCTACAAAAGGCAGATGGAAAAGAGAAAGTCTCTGAAAAGGTGGTACAGATCTGGTTAAACAACAACTAAACTACATGAGAGGATATCATATGTTTGTTTCTCTAGTTAAGACTAATGTAATGTAAAATGTACATGTTCAAAATATAAAACAAACGTACATCAATATCCCTTTA
>XR_005036799.1
TATTTCCTGGAAAGGAGACGAGGAAAAGTCATAAGAAGTTCTTGCTCGCCTCTAAAAAGTTGTTTACCTGACTTCATCTACGGTGTAAAGCGAGAAAGGTTGAAACGAAAAACAGATCCCCTTAtcttctcccccttttctcctccccctttgttctcttctctcccttcccgtccctctcctcttctccagatGTCTCTGATGGAGCACGGTGGTGGCGCCCACAACAGGCCGGTGACGGCAGTGGCCTGGGCCTCCAACAGCAGCACCTGTCCCAAAGACTTCAACCTGatCAGTATAACTGAGGATGGAGCTGCTGCAAACTTCACACGGAGCTTCGCCATGAAGGCTGGCTACTACCTCTGCTACAGCAAGGACATGTCAGGTGGTATGGTAGTATCAGATGTCCAGGTGATCTCAGACAAGGAGACTGTTCCTCATGGGTACTGTTACATACCTGAACACCTGGAGCCTAgggcCTCCGTGTCTAAGAAGAAGCGTGTGTGTGTCCGCATGGTGCCAGTGGGCGGTGTGGAGACTGCTGTACTGGACATCAAACTGACTGCTAAGACTAGGAGGATGCTGCAACACTACACCTGCTTgggggaCATGCATGGCTATGTGATGTGGTGTAAGAAGGGGCCCTTCTCCAGCCCTCTACCCCAGGCAAAGCCTCGCAGCCTCAGCCTTGACCTCCGTCAGCTCTCGCTGGACCAGAACCCCCCTCCGCTACCCCTCAGACCCAGCAACGCTCCACCCATGCCCCCTGGCAGGAAGCTCAGCCATCGCCGCAGCAACCTCCAATTGAACGATGCTGTGGACAAAGTGGTTGACAGCAGCAACATCTACGGCATCTCAGccaTAGATGGTGTTCCCTTCACTCTACACCCCAAGTTCAAGACCCAAACGAACGGCACGACTCCAACAAACACTCTGAACAACATTCGCATCAAGTCTGTCCAGGACATTgaaaatgagTACAACTACACTTTCACCGTGGAGGAAAACGCAGCCAAGAGAACCACATCGCTCACCACAGGAAGCACCTCTTAAGCACAATGACCTTTCATCTCCGACCTCAACAATGGCGGCCTGCTCGACCCACAACACTACGGAGGTCAATGTGATATGCCTGGGTCATGAAATGATAATCAATGTCCAAGTGCCTCGAAGATGACTGACTAGAACAGAAGTGTCATTCTACATTCCAGAGTACCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTTCCATTGGTTGTACCCACATTCTACATTCCAGAGTtccattggttatacccacattcTTATTCCGTGTTCTAAACTCTTGCACATTTCATTCTCACGCCCCGTATATGTGGCCAGTTATATATGTGAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCTCGTATATGGGGCCAGTTATATATGTTAGGGATGACTCTTCCCCCGTATATGGGGCCAGTTATATATGTTAGAGATGACTCTTTGACGGGGAAGAGAGCGTTGTATGGCAGGGCACGCTTGTTTCTCTCGTTAGAATAATGACAGGAACCTGTTGCGGTGTACCTGTTAACGTCAGGCTATTGATCTTCATCTTTATTGGGATGTTTAGGGACCAAACTAAATGTTGTTACACTTTCAATGTAAATAATGTTACTATTATGTCTCTGTGGTGAAACATGGGTCATTTCATGGTTAAAATATATAATAAGGAAGTATGGTTACCGGTCACTGGTTATATCTGTATATTGTGCCTtgcatgcaagtataaacacataAAGTACCAAATAGTTTGACGTGTACCGTTCTTATAAGGAGAGTTTGATATCCGTCACAGGGAGATAAAACATGTTAACACAGCAACTGCTGACACTTTATGCTCGGACTGATAGACACGCCCACTTTTCTGCATGTTCAAACAGGTGATTGGAGATTTGGTTTCCGTGTGTAACCCATAAGACCATGTGAACCTGCCAGTCTGCAGCTTTCACCTGTATCCACACTAGGTGCACCAGTCGACAGAAAAGTCCGGTTTTGGGGATTCAACTCGATCCGGAGTCGGGTGGATAGAAGATCCTGCAACCACGTTGTCAATTTGAATGCAAAACAGAGTATCTGGTCTGGGGATCATTCAGCTGGGGAAGACTGGAGCAGGGATGAGTGCAACCGGAAACACCAAAGAGGTGTTAATAGAAGAGTTCTCTTCTGAGTCTGTGACGATACAATGTGAAGATGTCCAAAGGATGAAGAGGACAGCTTCAGACACTACTGaaacagcaggaggaggagcagcaggaggaggtgcagcaggaggaggaggtgcagCATGCATAACAGAAGGTGTACTAGCAGCAGTACTAGAAGGAGTAGCAGGAGGAGAAGGAGTAGCAGCAACAGGAGCAACAGGTGTACTAGCAGCAGTACTAGGAGGAGTAGCAACAGGGCCAACAGAAGGTGTACTAGCAGCAGTACTAGGAGTTGTagcaggagaaggagaagcaGGAGTAACAGAAGGTGTACTAGCAGCAGTACTAGGAGGagaaggagcagcaggagaaggagaagcaGCAACAGAAGGTGTACTAGCAGTAGtagcaggagaaggagaaggagaagcaggAGAAGCAGCAACAGGAGCAACAGAAGGTGTACTAGCAGCAGTACTAGTAGGAGTAGCAGGAgaaggagcagcaggaggaggagcaggggaaggtgtagtagcagcagtactaggaggagtagcaggaggagcaGCAACAGGAGTATTGGTACTAGCTTTGGGAATACCAGCAGGAATAGCAGGAGCAGGAGTAGCAGCAGTTGCAGGAGTAGCATTTGCAGAGATTTTTCAAAAATGTACGCCTAAATCTACAAAAGGCAGATGGAAAAGAGAAAGTCTCTGAAAAGGTGGTACAGATCTGGTTAAACAACAACTAAACTACATGAGAGGATATCATATGTTTGTTTCTCTAGTTAAGACTAATGTAATGTAAAATGTACATGTTCAAAATATAAAACAAACGTACATCAATATCCCTTTA

Function

NR:

description
PREDICTED: multivesicular body subunit 12A-like isoform X1

GO: NA

KEGG:

id description
K12186 FAM125; ESCRT-I complex subunit MVB12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948850.1 False 950 mRNA 0.53 9 9747308 9766104
XM_036948849.1 False 2346 mRNA 0.47 10 9747309 9768242
XR_005036798.1 False 3195 mRNA 0.47 11 9747309 9772113
XR_005036799.1 True 3236 mRNA 0.48 11 9747344 9772113

Neighbor

gene id symbol gene type direction distance location
LOC110510389 LOC106592846 coding upstream 62125 9600334 ~ 9685183 (+)
LOC110493376 LOC106564189 coding upstream 154997 9581609 ~ 9592897 (+)
LOC110510627 LOC106593081 coding upstream 290809 9304567 ~ 9515031 (+)
LOC110487204 LOC106593073 coding upstream 451334 9281428 ~ 9295974 (+)
LOC110494875 LOC106586284 coding upstream 473335 9260658 ~ 9273973 (+)
LOC110518985 LOC106593960 coding downstream 3366 9775479 ~ 9780712 (+)
LOC110517298 LOC106564086 coding downstream 13680 9785793 ~ 9804783 (+)
LOC110516202 LOC106593004 coding downstream 37014 9809127 ~ 9871028 (+)
LOC110485424 LOC106592905 coding downstream 117388 9889501 ~ 9924663 (+)
LOC110487212 LOC106564193 coding downstream 189117 9961230 ~ 10002435 (+)
G1418440 NA non-coding upstream 2714 9743187 ~ 9744594 (+)
G1418430 NA non-coding upstream 39074 9705530 ~ 9708234 (+)
G1418420 NA non-coding upstream 52657 9693598 ~ 9694651 (+)
G1418411 NA non-coding upstream 55912 9691129 ~ 9691396 (+)
G1418407 NA non-coding upstream 80729 9666374 ~ 9666579 (+)
G1418444 NA non-coding downstream 10098 9782211 ~ 9782574 (+)
G1418447 NA non-coding downstream 12685 9784798 ~ 9785060 (+)
G1418449 NA non-coding downstream 35918 9808031 ~ 9808293 (+)
G1418450 NA non-coding downstream 51362 9823475 ~ 9823768 (+)
LOC110485387 LOC106593109 other upstream 500617 9234394 ~ 9247725 (+)
G1418488 LOC106564225 other downstream 166360 9938473 ~ 9939331 (+)
G1418476 LOC106592804 other downstream 260734 10032847 ~ 10034985 (+)
G1418503 NA other downstream 264852 10036965 ~ 10057136 (+)
G1418740 NA other downstream 892901 10665014 ~ 10666546 (+)
G1418812 NA other downstream 1118926 10891039 ~ 10893394 (+)

Expression


Co-expression Network