LOC110518985 (LOC106593960)


Basic Information

Item Value
gene id LOC110518985
gene name LOC106593960
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 9775479 ~ 9780712 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948851.1
TTGGGAAAACCAGCAGGAATAGCAGGAGTATCACTACTGGCTTTGGGAAAACCAGCAGGAATAGCAGGAGTATCACTACTGGCTTTGGGAAAACCAGCAGGAATAGCAGGAGTATCACTACTGGCTTTGGGAAAACCAGCAGGAATAGTAGGAATATCACTACTGGCTTTGGGAAAACCAGCAGGAATAGCAGGAGTATCACTACTGGCTTTGGGAAAACCAGCAGGAATAGCAGGAGTATCACTACTGGCTTTGGGAAAACCAGCAGGAATAGTAGGAGTATCACTACTGGCTTTGGGAAAACCAGCAGGAATAGTAGGAGTATCACTACTGGCTTTGGGAAAACCAGCAGGAATAGCaggagtagcagcagtaacagcagtagcatTTGCAGAGATTTTTCAAAAACGTACACCGAAATCTACAAGGAGCTGGGTGGAAAAGAGAAAGCCTCTGAAAAGACTCAATGCGTTGACAGAAAATCGACTTTGTGGGGATTCATTTCGTTTCGGAGTCGGGTGGATAGAAGATCCTACAGCCACTTTGTTCATTTGAAGACAGAGAGCGTCCACCAGGAGAAAGATATGGCATCTCCGTCTGGTACAGtggagaggaagaggagagctaGCATTTCAGTACCTCCCCACATGTCTGAAGAACCAAATAACTAACTGATCTGAGGATTGTTCTGCTTGGTCCAGTTGGAGCAGGGAAGAGTGCCACAGGAAATACCATCCTTGGGAGAGAGGCCTTTAAAGTGGACTCAGTCACCAAGGCATGCGAGAAACAGAGTAGGGAGGCAAATGGGAGGAAGATTGAAGTGTTGGACACCCCAGGACTCGGCGAGGACAGGAGAAGCGAGATAGCCAGATGCATCATGGACAAGACAGTCCCGGGTCCCCGTGTGTTCCTGCTGGTGATTCGGCTGGGGGTAAGGTTGACAGAGGACGAGAGGAACACTGAAGTGGATCCAGCAGACCGTCGGACAAGATGCCTCAGACTACACCATGATATTAGTCACCTGTGCAGATTCACCCCGTCTCAGAGGAAACACAGTGAATGACTACGTGAAACAGAACCAAAACCTACAGACACTCATCGACAGCTGTGGAGGCAGATATCACTCATTTAATAATGACGATAGGGAGGCCCACAATCAGGTCACAGAGCTGCTGGAGAAGATAGAAGAGATGGTGGAGGTGAATAAAGTGGGGCACTACACCAATGAGATGGAGCAGAACGCTCAGAGTGACATCACAGCCCAGATGGAGCAGAATGCTCAGAGTGACATCACAGCCCAGATGGAGCAGAATGCTCAGAGTGACATCACAGCCCAGATGGAGCAGAATGCTCAGAGTGACATCACAGCCCAGATGGAGCAGAATGCTCAGAGTGACATCACAGCCCAGATGGAGCAGAATGCTCAGAGTGACATCACAGCCCAGATGGAGCAGAACGCTCAGAGAGACATCACAGCCCAGATGGAGCAGAATGCTCAGAGAGACATCACAGCCCAGAAGATAAAGAGCAGGTCTACAACTTGGGGCGCTACAGCAGCAGCTCTTCTGGCGGCAGCCATTACATTGTTAATACTCTCAGGAGTAGTGAGAGTAGCGGGACCAACAGACCTAGTGGAACCAACAGTAGCAACCGGACCAGCATTGGGAATAGCAAAGCTAGCGAGATCAAGAGGAAGAGCCGGACCAGCATTGGTAGTACCAACAGAAGTAACGCGAGCAGCAGTCGGACCAGCATTGGAAGAAATAAAAGGAGTATTGGGAGTACTAGTAGGAGTAGCAGGCGTAGCATTGGTAGCACTTGCAGGGGTAGATGGACTAGCATTGGTAGTAGCAGCAGGTATGGCAGGTGTAGCAGGGTCAGCAGTAGGAGTTGCAGGACTAGCATTGGGAGTACCAGCAGGAGTAGCAATAATAGCAGGAACAGGAGTAGCGGGACTGGCAGGAGTAGAATTAGCAAAGAACTTCCAATGGTATCACAATAGACAGCATACTGGACAGGAGAGGGGTGGAAAACAGAAAGCCTCCTAAGATAAGTACAGATCTGGTTACCACAAAGAAATTCCTAGATGGGATAGTTCTGAAGTGTAAAATAGATTAAAGTCTGGGCGGGATGGCTGAGAGGTAACACAGTGGGTATGTCTGCATgaacagaaagagagggtggaCCTTTGACCTTTTATTGAATAGATGTGTATCTTTGGCCTTCGTAGTGTTCAGACGGTGTAACTGTTAACAAAATGATGGCAATGTCAaggaacaaacaaaaacacaatgtTGATGCAAAACAGAAGCACCTGGTAAATAAAAGGGCAAACATAGCCAAATGAAGGACTCCGCATGCTAGTGTTACAAAATGAGCCAATAAGAGAAGTGCACAACAACCAAACAGGAAGAAAATATCAATCTACATACCTTGGCCAACCGCTCACAGGCCAACCGCTCACCACAGGCAGACCGCTCACCACAGGCAGACCGCTCACCACAGGCAGACCGCTCACCACAGGCAGACCGCTCACCACAGGCAGACCGCTCACCACAGGCAGACCGCTCACCACAGGCAGACCGCTCACCACAGGCAAATGCACCTCTGAGTGGTCTGTGCTGTTTGGTTGAGAGATAACTAATGACTGCATGTAATTTAAAGGGATAGCCCCACCTCTTTCAGGTGGTGGCGATCTAGTTGATTAGTTGTGTGTGTCGACCAATGAGAAGCAGGCTCCCCTCCTACTCGGGAGGGGTTTCGTACAAGTACTTGTTTCTCTTGGAAGAAACAtttaaatgcttttttttttaattgtgttGAAACCATGATCTTATATCCCGTTGAGTATTGTTGGTCTATTGccctttcatttatttattttttatcttcacCATTTTTTATGGGATGTTTAGGGATCAAACTAAATGTGTTCTTACAGTTTCAATGTATACACTATTActatcatgtctgtgttgtgaAACATGGGTCAATTCATGGTGTTTTTATAGTAACCCATGAAGGATATTTAACCGACTCTATTCTGTCCCTGTGTACCTTGCATGCATGTAAGAAAATAGAACACCAACTACTTGATTGAGATTTTTATTGCCGTTTTGTTAAACTAAATGGTTATTCCAAGGAAAATGTGATTTATTTATGTACTGCTGTCTGCTGTCTAAAGGTGGCGCCAACGTAGAGGGCCGCCTCACTTCTagttcttaggaaactttgcagtattttttttgttcatgtattatttcttacattgttagccaaGAAAATGTTATGTGTTATTACATATAACTGGGAATAACTATTttttcacaagcatttcgctacactcgcaataacatctgctaaccacgtgtatgtgaccaataacatctgctaaccacgtgtatgtgaccaa

Function

NR:

description
GTPase IMAP family member 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948851.1 True 3412 mRNA 0.46 5 9775479 9780712

Neighbor

gene id symbol gene type direction distance location
mvb12a LOC106564207 coding upstream 3366 9747308 ~ 9772113 (+)
LOC110510389 LOC106592846 coding upstream 90296 9600334 ~ 9685183 (+)
LOC110493376 LOC106564189 coding upstream 183168 9581609 ~ 9592897 (+)
LOC110510627 LOC106593081 coding upstream 318980 9304567 ~ 9515031 (+)
LOC110487204 LOC106593073 coding upstream 479505 9281428 ~ 9295974 (+)
LOC110517298 LOC106564086 coding downstream 5081 9785793 ~ 9804783 (+)
LOC110516202 LOC106593004 coding downstream 28415 9809127 ~ 9871028 (+)
LOC110485424 LOC106592905 coding downstream 108789 9889501 ~ 9924663 (+)
LOC110487212 LOC106564193 coding downstream 180518 9961230 ~ 10002435 (+)
LOC118940260 LOC106594684 coding downstream 231783 10012495 ~ 10031963 (+)
G1418442 NA non-coding upstream 5627 9769198 ~ 9769852 (+)
G1418440 NA non-coding upstream 30885 9743187 ~ 9744594 (+)
G1418430 NA non-coding upstream 67245 9705530 ~ 9708234 (+)
G1418420 NA non-coding upstream 80828 9693598 ~ 9694651 (+)
G1418411 NA non-coding upstream 84083 9691129 ~ 9691396 (+)
G1418444 NA non-coding downstream 1499 9782211 ~ 9782574 (+)
G1418447 NA non-coding downstream 4086 9784798 ~ 9785060 (+)
G1418449 NA non-coding downstream 27319 9808031 ~ 9808293 (+)
G1418450 NA non-coding downstream 42763 9823475 ~ 9823768 (+)
LOC110485387 LOC106593109 other upstream 528788 9234394 ~ 9247725 (+)
G1418488 LOC106564225 other downstream 157761 9938473 ~ 9939331 (+)
G1418476 LOC106592804 other downstream 252135 10032847 ~ 10034985 (+)
G1418503 NA other downstream 256253 10036965 ~ 10057136 (+)
G1418740 NA other downstream 884302 10665014 ~ 10666546 (+)
G1418812 NA other downstream 1110327 10891039 ~ 10893394 (+)

Expression


Co-expression Network