LOC118940260 (LOC106594684)


Basic Information

Item Value
gene id LOC118940260
gene name LOC106594684
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 10012495 ~ 10031963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948897.1
CAGTGGCCAATTGCGCTTTACCGGGGCGTGGAGAGCGAGCCAGTGCCgctctatatatatatccatcACTTAATACTCAGGATATTAACACTTGACGCTCGGTGACAGTAGCCGCGGTCACAGGCTCTCTCAGCCGCTTCAGACCCTCGCCACCTCAGCAGCAGCACAAGCAGCAGTAGCGGTAGAGGACAGAAGACTGAAAGATAGgcagtctctttctctcagctAGGCCATAGTCATTGTTGTAATCGTGATCGATGAGTCTGTCCGGGAAGCAGCGGTTCTCCGCCAACTCTTTCTCCGGGTTCGGGAGCCGGAAGATGGCATTGTCCTCCGCCGGGGGTTCGTCAATGCGCTCCAGCTTCGGGAGCAGAATGGGCTTTGGAGACGGTGGAGGAGGAGGGTTCAGGATGTCATCCTCCAGCCACATGGCAGGTCTGGGGAGTGGGATGAGCACCGGTGGCAGTGGCAGCGGGATGTTcggtggtggtggaggcggtGGAGGAGGAGGTTTCGGGTACGGTGGAGGTGTTGAGGACACGTCCCTCGGGTTCGCCGGTAACGAGAAGCAGCACATGCACAACCTGAACGACCGCCTGGCAACCTACATGGAGAAGGTTCGCCAGCTGGAGGCCACCAACCACCAGCTGGAGGAGAAGCTGAAGACCTTCACCTTCAACAAGGTGGAGGCGCACGACCTGACCATCTACGACGCAACACTCAAACCACTCATGGAGCAGcTCATGGGTTTCCTGATACAGAACACTCAGATTGCTGTGGAGATCGACAACGCCAAGCTGACTGCTGACGACTTCAGAGTCAAGTGGGAGAATGAGCTGTCTTTGCGCCAGTGTGTGGAGGGGGACATCGGAGGTCTGAGGAACCTGCAGCGGGAGTTTGAGATGAACATCACAGCCACGATGCAGGACCTGCAGGGGTACGAGAACGAACGGGTCTCCATGGCGAAGAGCCATGAAGAGGAGCTGTTGTCCATGCGTGGGGGGATGACGGGCCAGGTGAACGTGGATGTCCAGGCTACTAAGAGCCAGGACCTGTCTCTGATGCTGGCTGAAGTCAGGTCGGAGTACGAGGCGGCCGTGGAGAAAAACCGCAGACAGGCCGAGGCCTGGTACATGAAACAGgtggAGATGAAGCAGGCAGAGTCGGCGGTGGTGATGGAGACGACCACGACGACCACGTCGGAGATGACAGAGTTACGGAACCGCTACCAGACCCTACAGATGGAATACCAGGGACTACGTATGGGgATGGCGAACCTAGAGGCCAGGCTGTTGGAGGTTCAGTCCCAGTTCCAGCAACGTCTGTCTGGGTATAGTGGCAAGGTGATGGGCCTGGAGGGAGAACTGACCTCCATAAGGGCCAGCACCACTGAGCAGAGCCAGGACTACCAGATCCTTCTGAACATCAAGAGTCGTCTAGAGATGGAGATCCAGCAGTATAAGCATCTGCTGGAGGGAGCCGGCCTGGGAGGGGGCATGGTCCCTGGAGGGGCTGACCTGGGAGGGGGCATGGTGGTCTCTGGAGGGGCCGGGAGGTCGGCAGGTAAGGCTGTTGTGACCAGGACCACTGTGTTGGAGGTGAAATCCTCGGGAGGAGGAGTGGGGACGGGAGGAAGCTCCATGTTGATGCATTCCACTAGCTCCACCTCCAGCAGTTCTGGGGGCGGGGCAGCCATGCTGTCATCAGGAGGTGCCGCGATGGTGTCCGTCAGGGGACCAGCCATGCTGTCATCAGGAAGCCCCGCAATGGTGTCTGGCAGCGGATCAGCCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCCCCATCAGGAGGAGGCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAAGAGGAGGCACGGCGCCATCAGCAGGCGGCACGGTGCCAGCAGCAGGCGGCACGGCGCCATCAGCAGGAGGCACGACGCCATCGGGAGGCACGGCGCCATCAGCAGGAGGCACGGCCCCATCAGGAGGCGGCACGACGCCATCAGCAAGCGGCACGGCCCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAAGCGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAAGCAGCACGGCCCCACCCGCAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCGCCATCAGTAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAGGCGGCACGGCGCCATCAGCAGGAGGCACGGTGCCATCAGGAGGCGGCACGGCGCCAGCAGCAGGCGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGGAGGCGGCACGGCGCCAGCAGCAGGCGGCACGGCGCCATCAGGAGGCGGCACGGCGCCATCAGGAGGCGGCACGGCGCCATCGGGAGGCGGCACGGCGCCATCGGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAAGCGGCACGGCCCCATCAGCAGGAGGCACGGCGCCATCAGCAAGCGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGGAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGGAGGAGGCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCTCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGTGCCATCAGCAGGCGGCACGGCGCCAGCAGCAGGCGGCACGGCGCCAGCAGCAGACGGCACAGCGCCATCAGCAGGAGGCACGGCGCCATCAGGAGGCGGCACGGCGCCATTGGGAGGCACGGCCCCATCAGCGGGAGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAGGTGGGggaccagctctgatgtcatcaGGAGGCGTCACAATGGTGTCCGGTGGGggaccagctctgatgtcatcaGGAGGCGTCGCGATAGTGTCCGGTGGGggaccagctctgatgtcatcaGGAGGCGTCGCAATGGTGTCCGGTGGGggaccagctctgatgtcatctGGAGGAGCCGCGATGGTTTCCAGCGTGGGCCCAGCCACGGTGTCATCAGGAGGTGCTGCGATGGTGTCATCGGGCGGGGGCATGACCGTGTCCGGTAGCAACTCGTCTTCCACCAGCGTGTTGACCAGCTCCACCATGGAAGGTGAACATAGAGATATAATAACTAGACCAGCTCCACCATGGAAGGTGAACATAGAGATATAATAACTAGACCAGCTCCACCATGGAAGGTTAACATAGAGATATAATAACTAGACCAGCTCCACCATGGAAGGTTAACATAGAGATATAATAACTAGACCAACTCCACCATGGAAGGTGAACATAGAGATATAATAACTAGACCAGCTCCACCATGGAAGGTTAACATAGAGATATAATAACTAGACCAGCGCCACCATGGAAGGTGAACATAGAGATATAATAACTAGACCAGCTTCACCATGGAGGGTTAACATAGAGATATAATAACTAGACCAGCTCCACCATGGAAGGTGAACATAGAGATATAATAACTAGACCAGCTCCACCATGGAAGGTTAACATAGAGATATAATAACTAGACCAGCGCCACCATGGAAGGTGAACATAGAGATATAATAACTAGACCAGCTCCACCATGGAAGGTTAACATAGAGATATAATAACTAGACCAGCGCCACCATGGAAGGTGAACATAGAGATATAATAACTAGACCAGCTTCACCATGGAGGGTTAACATAGAGATATAAT
>XM_036948898.1
CAGTGGCCAATTGCGCTTTACCGGGGCGTGGAGAGCGAGCCAGTGCCgctctatatatatatccatcACTTAATACTCAGGATATTAACACTTGACGCTCGGTGACAGTAGCCGCGGTCACAGGCTCTCTCAGCCGCTTCAGACCCTCGCCACCTCAGCAGCAGCACAAGCAGCAGTAGCGGTAGAGGACAGAAGACTGAAAGATAGgcagtctctttctctcagctAGGCCATAGTCATTGTTGTAATCGTGATCGATGAGTCTGTCCGGGAAGCAGCGGTTCTCCGCCAACTCTTTCTCCGGGTTCGGGAGCCGGAAGATGGCATTGTCCTCCGCCGGGGGTTCGTCAATGCGCTCCAGCTTCGGGAGCAGAATGGGCTTTGGAGACGGTGGAGGAGGAGGGTTCAGGATGTCATCCTCCAGCCACATGGCAGGTCTGGGGAGTGGGATGAGCACCGGTGGCAGTGGCAGCGGGATGTTcggtggtggtggaggcggtGGAGGAGGAGGTTTCGGGTACGGTGGAGGTGTTGAGGACACGTCCCTCGGGTTCGCCGGTAACGAGAAGCAGCACATGCACAACCTGAACGACCGCCTGGCAACCTACATGGAGAAGGTTCGCCAGCTGGAGGCCACCAACCACCAGCTGGAGGAGAAGCTGAAGACCTTCACCTTCAACAAGGTGGAGGCGCACGACCTGACCATCTACGACGCAACACTCAAACCACTCATGGAGCAGcTCATGGGTTTCCTGATACAGAACACTCAGATTGCTGTGGAGATCGACAACGCCAAGCTGACTGCTGACGACTTCAGAGTCAAGTGGGAGAATGAGCTGTCTTTGCGCCAGTGTGTGGAGGGGGACATCGGAGGTCTGAGGAACCTGCAGCGGGAGTTTGAGATGAACATCACAGCCACGATGCAGGACCTGCAGGGGTACGAGAACGAACGGGTCTCCATGGCGAAGAGCCATGAAGAGGAGCTGTTGTCCATGCGTGGGGGGATGACGGGCCAGGTGAACGTGGATGTCCAGGCTACTAAGAGCCAGGACCTGTCTCTGATGCTGGCTGAAGTCAGGTCGGAGTACGAGGCGGCCGTGGAGAAAAACCGCAGACAGGCCGAGGCCTGGTACATGAAACAGgtggAGATGAAGCAGGCAGAGTCGGCGGTGGTGATGGAGACGACCACGACGACCACGTCGGAGATGACAGAGTTACGGAACCGCTACCAGACCCTACAGATGGAATACCAGGGACTACGTATGGGgATGGCGAACCTAGAGGCCAGGCTGTTGGAGGTTCAGTCCCAGTTCCAGCAACGTCTGTCTGGGTATAGTGGCAAGGTGATGGGCCTGGAGGGAGAACTGACCTCCATAAGGGCCAGCACCACTGAGCAGAGCCAGGACTACCAGATCCTTCTGAACATCAAGAGTCGTCTAGAGATGGAGATCCAGCAGTATAAGCATCTGCTGGAGGGAGCCGGCCTGGGAGGGGGCATGGTCCCTGGAGGGGCTGACCTGGGAGGGGGCATGGTGGTCTCTGGAGGGGCCGGGAGGTCGGCAGGTAAGGCTGTTGTGACCAGGACCACTGTGTTGGAGGTGAAATCCTCGGGAGGAGGAGTGGGGACGGGAGGAAGCTCCATGTTGATGCATTCCACTAGCTCCACCTCCAGCAGTTCTGGGGGCGGGGCAGCCATGCTGTCATCAGGAGGTGCCGCGATGGTGTCCGTCAGGGGACCAGCCATGCTGTCATCAGGAAGCCCCGCAATGGTGTCTGGCAGCGGATCAGCCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCCCCATCAGGAGGAGGCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAAGAGGAGGCACGGCGCCATCAGCAGGCGGCACGGTGCCAGCAGCAGGCGGCACGGCGCCATCAGCAGGAGGCACGACGCCATCGGGAGGCACGGCGCCATCAGCAGGAGGCACGGCCCCATCAGGAGGCGGCACGACGCCATCAGCAAGCGGCACGGCCCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAAGCGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAAGCAGCACGGCCCCACCCGCAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCGCCATCAGTAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAGGCGGCACGGCGCCATCAGCAGGAGGCACGGTGCCATCAGGAGGCGGCACGGCGCCAGCAGCAGGCGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGGAGGCGGCACGGCGCCAGCAGCAGGCGGCACGGCGCCATCAGGAGGCGGCACGGCGCCATCAGGAGGCGGCACGGCGCCATCGGGAGGCGGCACGGCGCCATCGGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAAGCGGCACGGCCCCATCAGCAGGAGGCACGGCGCCATCAGCAAGCGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGGAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGGAGGAGGCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGGAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCTCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGTGCCATCAGCAGGCGGCACGGCGCCAGCAGCAGGCGGCACGGCGCCAGCAGCAGACGGCACAGCGCCATCAGCAGGAGGCACGGCGCCATCAGGAGGCGGCACGGCGCCATTGGGAGGCACGGCCCCATCAGCGGGAGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCCCCATCAGCAGGAGGCACGGCGCCATCAGCAGGAGGCACGGCGCCATCAGCAGGTGGGggaccagctctgatgtcatcaGGAGGCGTCACAATGGTGTCCGGTGGGggaccagctctgatgtcatcaGGAGGCGTCGCGATAGTGTCCGGTGGGggaccagctctgatgtcatcaGGAGGCGTCGCAATGGTGTCCGGTGGGggaccagctctgatgtcatctGGAGGAGCCGCGATGGTTTCCAGCGTGGGCCCAGCCACGGTGTCATCAGGAGGTGCTGCGATGGTGTCATCGGGCGGGGGCATGACCGTGTCCGGTAGCAACTCGTCTTCCACCAGCGTGTTGACCAGCTCCACCATGGAAGgtaAAGTCTCTACTGGTGATATTACCATAGTTCCCATATAGTGATTCCCTTCTCTGATTCACGTCACAACACTCTCCAGGACCACGgaaccccctacacacacacacacacacacacaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtagcctctctctactactaacacacagctcacaTTCTGACCTGAACATCATGACGTGTAGCCTCTCTCTACTACTAACACACAGTCCACATTCTGACCTGAACATCATGACGTGTAGCCTCTCTCTACTACTAACACACAGTCCACATTCTGACCTGAACATCATGACGTGTcacttctctctcttctgtttaaTTTAAATTACATTTGACGTTTCCATTTATAATAAAAACCTGACCCTACAATGAGA

Function

NR:

description
keratin, type I cytoskeletal 13-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948897.1 False 4086 mRNA 0.61 8 10012495 10030347
XM_036948898.1 True 3949 mRNA 0.62 9 10012495 10031963

Neighbor

gene id symbol gene type direction distance location
LOC110487212 LOC106564193 coding upstream 10060 9961230 ~ 10002435 (+)
LOC110485424 LOC106592905 coding upstream 87832 9889501 ~ 9924663 (+)
LOC110516202 LOC106593004 coding upstream 141467 9809127 ~ 9871028 (+)
LOC110517298 LOC106564086 coding upstream 207712 9785793 ~ 9804783 (+)
LOC110518985 LOC106593960 coding upstream 231783 9775479 ~ 9780712 (+)
LOC110518417 LOC106592827 coding downstream 281411 10313374 ~ 10350237 (+)
LOC110519905 LOC106593320 coding downstream 322690 10354653 ~ 10377753 (+)
LOC110513591 LOC106564232 coding downstream 347966 10379929 ~ 10393850 (+)
LOC110518415 NA coding downstream 366023 10397986 ~ 10401763 (+)
LOC110513592 LOC106592278 coding downstream 393861 10425824 ~ 10440953 (+)
G1418502 NA non-coding upstream 8160 10003491 ~ 10004335 (+)
G1418489 NA non-coding upstream 29894 9943897 ~ 9982601 (+)
G1418497 NA non-coding upstream 47100 9964632 ~ 9965395 (+)
G1418487 NA non-coding upstream 81988 9930297 ~ 9930507 (+)
G1418486 NA non-coding upstream 82226 9929339 ~ 9930269 (+)
G1418476 LOC106592804 non-coding downstream 884 10032847 ~ 10034985 (+)
G1418503 NA non-coding downstream 5002 10036965 ~ 10057136 (+)
G1418517 NA non-coding downstream 11802 10043765 ~ 10044031 (+)
G1418518 NA non-coding downstream 15582 10047545 ~ 10048518 (+)
G1418504 NA non-coding downstream 20436 10052399 ~ 10054198 (+)
G1418488 LOC106564225 other upstream 73164 9938473 ~ 9939331 (+)
LOC110510389 LOC106592846 other upstream 397547 9600334 ~ 9685183 (+)
LOC110493376 LOC106564189 other upstream 422541 9581609 ~ 9592897 (+)
LOC110510627 LOC106593081 other upstream 504683 9304567 ~ 9515031 (+)
LOC110487204 LOC106593073 other upstream 723398 9281428 ~ 9295974 (+)
G1418740 NA other downstream 633051 10665014 ~ 10666546 (+)
G1418812 NA other downstream 859076 10891039 ~ 10893394 (+)
G1418818 NA other downstream 941935 10973898 ~ 10980383 (+)

Expression


Co-expression Network