LOC110518417 (LOC106592827)


Basic Information

Item Value
gene id LOC110518417
gene name LOC106592827
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 10313374 ~ 10350237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948909.1
TTCATCAAAGCATTGTTGACAGTCACTCTGTTGTCATTGACAGTGTAGCAGAGTTGAAGATCACTAGTCCAACATAGACTCTGAGAACAACAAGGTTAACTTCTGTTATTAGAAAGgagctggTAGCTGCTTCTGAGAGGGAACAGATGCCAGCAGAGGCAGAGAGCGCCAAACTCCCCAGCACCTCTTCTGGAATGTTGACCCGGTCTGGAGAGAAGCATCACCAtctggagaggcagagggaggtgaCTAGGGCACTGGTCATCAAGAGTTCTCCAGATGGATTTACACCTGAAATCCATTATCAGGACAACAGGGGAGAGTACCGTTTCCAGTGCCCCCATGCAGGTCTGTTCCAGTGCAGTATAACAGGCCTGGTGtttaggatggagggagaggcagaggtgCTCTACATGACAGTCCCCTGGGACAGGATGCTTCTATCCCAGAGAGGCAAGAGACCTGCAGGACCCCTGTTCAAGTTTACATGCCTTAAGGGGTCTGTCAGTCAACTACACCTTCCACACTGTGAGATTCATTCTGaggGTGGATGTGACTTCCTGTCTGTAGCCCATGTGACTGATGATGACAGTATGGAGTTTCTCCATCACCATGAGACAAGAGAAACTcatgtcatattaaacatcaCTCAATTCAGCAAATATGGCATCACCAAGGATAAGgaagctcctgtctctcctatccgTGCTCTGGTGCTACTATTTTACAAACTCCCAGATGATAACAATAATTCCACCCTAAGTGTGTTGTTGCTGCCCAGAAATGTTGACATTGATGAGGTGTGTAAGACAAGGAGGACAAGGAATGGAGACCGAGAAATCTACATTGAAATAAATCCTAACTGTAGACTAACCCGGGACCAAGAATACACCCTCTCCACCGATCTAACAGATGAACATCACATAGATCCAGAGaatgcAGAGTTTGTGGATTATGATTCCTATACAAACTACATGCCAACATTTCAGTTGCGTTTAAAAACTGTTGTTGAAGAAGTGAATCTTCTTCTGGAAGAACATGGCGGTCCTGAAAATGAACGTATATGGGACCGCCTTGTTTCACTACCAGttacacctccagaTGGCGCTAGAGCAGcatccaaactgCATGAACATGCTGCTCCCCTTATGGACATTTCCACCCACCCCCCTCAACAGACGTTCACTCTGCCCCCCACCTCAATGaagctggTAGCCGCTTCTGAGAGGAAACAGAAGCCAGCAGGGGCAAAGAGGGCCAAACTCCACAGCACCTCTTCTGGAATGTTGACCCGGTCTGGAGAGAAGCGTCGCCATCTGGAAAGGAAGGGGGCTAAGGCACTGGCCATTAGGAGCTCCTCCATGTTGGATGTTCTAGACCTGCTGCTGACCAGTCTGAAGGAGCTCACTGAAGAACAGCTGAAGACATTTCAGTCTCACCTGACTACGGTCCAGCTGCCTGGTTTTCCTCCCATCCCAGAGAGTCAGCTGGAGAACACTGACAGACAGGTCACAGTGGATCAGATGGTGGAGAGATATGGCCCTGAGGGAGCTGTGGAGATCACAGTGGAGATCCTGAGGGAGATGAATCAGCATGATCTCGCTAAGAAGTTACAAAGAGATCACAGAGgaAAGAAACTGAAAAAAATTACACCACCAGCTGGCAATGCAGCAGtttttaaagGGACGAAACCAAATGTTTCTTATCTGCTGCTGGGCACTCTGGCAGAGCTGGTTTCAGAAGAGCTGAAGTTATTTCAGTGGCACCTGATTCATGGTGTGGAGGGCTTTACTTCAATCCCACGGGGCCAGCTGGAGAACGCTAACAGACTGGTCACAGTGGATAGGATGGTGCAGCAATACCACGAGGACGGTGCTGTGAAGATCACACTAGAGATCCTGAGGAAGATGGACCAGAACAAAATGGCTGATGAGTTAGAGAAGAAGTTCCCAAACAATGTCTGAACTGTATACAGTATGTCTACAACTCTATATACATTCGCACATCAAGTCTTCTCTTGAGATGGGCTCTGGGATGGAACAACTGTTGAACATCTGTGGTTGTTTGTGGGGGAAGTGTGGgtagtgtgtgtgactgtgggtgtgtgtacgTATCCCACATATGTTGCTATGAGGTAATGGTGTTAGGGACAATATAGGATGAATCACAATAATTATTTGACAAAATAATAATTG
>XM_036948910.1
TTCATCAAAGCATTGTTGACAGTCACTCTGTTGTCATTGACAGTGTAGCAGAGTTGAAGATCACTAGTCCAACATAGACTCTGAGAACAACAAGGTTAACTTCTGTTATTAGAAAGgagctggTAGCTGCTTCTGAGAGGGAACAGATGCCAGCAGAGGCAGAGAGCGCCAAACTCCCCAGCACCTCTTCTGGAATGTTGACCCGGTCTGGAGAGAAGCATCACCAtctggagaggcagagggaggtgaCTAGGGCACTGGTCATCAAGAGTTCTCCAGATGGATTTACACCTGAAATCCATTATCAGGACAACAGGGGAGAGTACCGTTTCCAGTGCCCCCATGCAGGTCTGTTCCAGTGCAGTATAACAGGCCTGGTGtttaggatggagggagaggcagaggtgCTCTACATGACAGTCCCCTGGGACAGGATGCTTCTATCCCAGAGAGGCAAGAGACCTGCAGGACCCCTGTTCAAGTTTACATGCCTTAAGGGGTCTGTCAGTCAACTACACCTTCCACACTGTGAGATTCATTCTGaggGTGGATGTGACTTCCTGTCTGTAGCCCATGTGACTGATGATGACAGTATGGAGTTTCTCCATCACCATGAGACAAGAGAAACTcatgtcatattaaacatcaCTCAATTCAGCAAATATGGCATCACCAAGGATAAGgaagctcctgtctctcctatccgTGCTCTGGTGCTACTATTTTACAAACTCCCAGATGATAACAATAATTCCACCCTAAGTGTGTTGTTGCTGCCCAGAAATGTTGACATTGATGAGGTGTGTAAGACAAGGAGGACAAGGAATGGAGACCGAGAAATCTACATTGAAATAAATCCTAACTGTAGACTAACCCGGGACCAAGAATACACCCTCTCCACCGATCTAACAGATGAACATCACATAGATCCAGAGaatgcAGAGTTTGTGGATTATGATTCCTATACAAACTACATGCCAACATTTCAGTTGCGTTTAAAAACTGTTGTTGAAGAAGTGAATCTTCTTCTGGAAGAACATGGCGGTCCTGAAAATGAACGTATATGGGACCGCCTTGTTTCACTACCAGttacacctccagaTGGCGCTAGAGCAGcatccaaactgCATGAACATGCTGCTCCCCTTATGGACATTTCCACCCACCCCCCTCAACAGACGTTCACTCTGCCCCCCACCTCAATGaagctggTAGCCGCTTCTGAGAGGAAACAGAAGCCAGCAGGGGCAAAGAGGGCCAAACTCCACAGCACCTCTTCTGGAATGTTGACCCGGTCTGGAGAGAAGCGTCGCCATCTGGAAAGGAAGGGGGCTAAGGCACTGGCCATTAGGAGCTCCTCCATGTTGGATGTTCTAGACCTGCTGCTGACCAGTCTGAAGGAGCTCACTGAAGAACAGCTGAAGACATTTCAGTCTCACCTGACTACGGTCCAGCTGCCTGGTTTTCCTCCCATCCCAGAGAGTCAGCTGGAGAACACTGACAGACAGGTCACAGTGGATCAGATGGTGGAGAGATATGGCCCTGAGGGAGCTGTGGAGATCACAGTGGAGATCCTGAGGGAGATGAATCAGCATGATCTCGCTAAGAAGTTACAAAGAGATCACAGAGgaAAGAAACTGAAAAAAATTACACCACCAGCTGGCAATGCAGCAGGGACGAAACCAAATGTTTCTTATCTGCTGCTGGGCACTCTGGCAGAGCTGGTTTCAGAAGAGCTGAAGTTATTTCAGTGGCACCTGATTCATGGTGTGGAGGGCTTTACTTCAATCCCACGGGGCCAGCTGGAGAACGCTAACAGACTGGTCACAGTGGATAGGATGGTGCAGCAATACCACGAGGACGGTGCTGTGAAGATCACACTAGAGATCCTGAGGAAGATGGACCAGAACAAAATGGCTGATGAGTTAGAGAAGAAGTTCCCAAACAATGTCTGAACTGTATACAGTATGTCTACAACTCTATATACATTCGCACATCAAGTCTTCTCTTGAGATGGGCTCTGGGATGGAACAACTGTTGAACATCTGTGGTTGTTTGTGGGGGAAGTGTGGgtagtgtgtgtgactgtgggtgtgtgtacgTATCCCACATATGTTGCTATGAGGTAATGGTGTTAGGGACAATATAGGATGAATCACAATAATTATTTGACAAAATAATAATTG

Function

NR:

description
uncharacterized protein LOC110516802

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948909.1 False 2195 mRNA 0.47 17 10313374 10350237
XM_036948910.1 True 2186 mRNA 0.48 16 10313374 10350237

Neighbor

gene id symbol gene type direction distance location
LOC118940260 LOC106594684 coding upstream 281411 10012495 ~ 10031963 (+)
LOC110487212 LOC106564193 coding upstream 310939 9961230 ~ 10002435 (+)
LOC110485424 LOC106592905 coding upstream 388711 9889501 ~ 9924663 (+)
LOC110516202 LOC106593004 coding upstream 442346 9809127 ~ 9871028 (+)
LOC110517298 LOC106564086 coding upstream 508591 9785793 ~ 9804783 (+)
LOC110519905 LOC106593320 coding downstream 4416 10354653 ~ 10377753 (+)
LOC110513591 LOC106564232 coding downstream 29692 10379929 ~ 10393850 (+)
LOC110518415 NA coding downstream 47749 10397986 ~ 10401763 (+)
LOC110513592 LOC106592278 coding downstream 75587 10425824 ~ 10440953 (+)
LOC110517322 LOC106592307 coding downstream 121706 10471943 ~ 10516317 (+)
G1418609 NA non-coding upstream 87761 10213733 ~ 10225613 (+)
G1418567 NA non-coding upstream 93615 10219045 ~ 10219759 (+)
G1418566 NA non-coding upstream 94570 10217187 ~ 10218804 (+)
G1418596 NA non-coding upstream 131810 10174592 ~ 10181564 (+)
G1418600 NA non-coding upstream 132289 10176093 ~ 10181085 (+)
G1418682 NA non-coding downstream 92693 10442930 ~ 10443315 (+)
G1418684 NA non-coding downstream 93572 10443809 ~ 10444380 (+)
G1418683 NA non-coding downstream 94211 10444448 ~ 10447112 (+)
G1418693 NA non-coding downstream 122615 10472852 ~ 10474741 (+)
G1418694 NA non-coding downstream 125737 10475974 ~ 10479768 (+)
G1418503 NA other upstream 273668 10036965 ~ 10057136 (+)
G1418476 LOC106592804 other upstream 278389 10032847 ~ 10034985 (+)
G1418488 LOC106564225 other upstream 374043 9938473 ~ 9939331 (+)
LOC110510389 LOC106592846 other upstream 698426 9600334 ~ 9685183 (+)
LOC110493376 LOC106564189 other upstream 723420 9581609 ~ 9592897 (+)
G1418740 NA other downstream 314777 10665014 ~ 10666546 (+)
G1418812 NA other downstream 540802 10891039 ~ 10893394 (+)
G1418818 NA other downstream 623661 10973898 ~ 10980383 (+)
G1418923 NA other downstream 864624 11214861 ~ 11216573 (+)
G1418947 NA other downstream 916138 11266375 ~ 11269283 (+)

Expression


Co-expression Network