LOC118940266 (LOC106592549)


Basic Information

Item Value
gene id LOC118940266
gene name LOC106592549
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 11095533 ~ 11111355 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948937.1
gttcttaactgacttgcctagttaaataaaggataaatcaaataaaaatggtGTTATAATTAtgttgaaatgtgtttatagccATAATAGATCACAGACTATATATCTATTATACATGTTAAAAACCTTTCTATAGAGTTAGAGATAATaaaatataatgtgtgtgtgtgtgtgtgtgtgtgtggaggtggtacATGTTGATATTTCTCTAAATGTGTTACATTTCTGAGGCTGTCAGGGGGAGGGAATGTGACAAGTCGGTTACACGGTTGACGTTCTGACTGTTTTCTCACGGGAAAAGCGCCCCAGAACCAAGGGGGCGTTTAGTGTGACTAGCTGTCGGGTCAGAACAGATGTAGAGCACAGGAATCTGCTTCGCTCATTGGTTTCCAGAGTATAGACTTCGGGGCCCTCCAATCTAGTCCTATGTCTATTACTAAAAGGCTATTTAGCATACAAACAAATAAAGCAAACGCTTCTTACACGTATGAGCTATATTATCTCAAAACAGTTTAATTAAGATACACATTGTAGGCAATTACACATGAGTTTATTGATCTGTATTACTCTAATAATATATCGGTGCAAGTGGTTACTGTTTCTCACCCGCGGGGGCTATGTCAAGGTGTTTTGAATTTGTGCGTGTGCatatttgtgtgtgagtgagtggataTTTACTGCTCTGAAACACGACGCTGGTGTAGGCTATCTTCAGACCTGCGCGTGCTGCCGTACTAATATTTATAAGAGCTATCGGGATGTGGCGCCAAGAACATCCGTGCTTGTCCGCGttaagacgcacacacacacacacacacacacacactgagcgaGAGACCGAGAAGTTCGTCCGCTCGGGGCGTGGTTTAGAGCGTGTCACTCAAGCGGAGGAGTCAGCTGCTGGCACGAGTCTGGGCGGGGTGACGTGTGCGGAGCTGGAGCCCAGGCAGCAGCAGAAGTTCGTTACTAATGTCAGGACTTCCTCCTGTCTGTTAGTCACCAGTCTACTGCCGGAGGCTCCCAACGGTTTTACACGGATATTCCATCCTGTCGAAATGAAACGGAACTTTTACGGTGCAAAACAGAACTGTTGATTCTGGTGGACCCGTAACCTTCTTTCAAGAGACCACGATGTGAATAAATAGTCATTTGCAGGATTTATTTGTGGATTTTTGTGGTTACTGAAAGGCGGGACGTGGTCTGACCATACTGGGGCGGAGGAGCGGTTGGTCAACCATGCTGTGGCCAGGCTTAACGCACTGGGTAGCGGCTGTGTTTCTCTGTCGGGTCGCCTCGGCGCAGTACACCAGCGACCAGTGCAGCTGGAGAGGAAGtgGTCTGACCCATGAGTCTCACTCCCGTGATGTGGAGCAGGTATACCTGCGTTGCTCCCAGGGCAGTCTAGAGTGGCTCTATCCTACTGGGGCCCTCATCGTCAACCTGCGGCCCAACACGGAGCCCACGTCTGGGGCTTCCTCCGGCCTGCACGCCTGCATCAAGCCCCAGACAGACTCCCGCGGATCACACCTCTACCTGGAGAGAGCTGGACAGCTCCGCCTGCTGATGTCTGAGACAGAACAGGCGCATGGCAGGGTGCAGTGTTTCTCCCtgacagagggggcgctgttcATAGAGGCAGTGGGCCAGCAGGACATCAGCAAGAGGATCACAGTGTTTCAGTATGAACTGGTGGCCAGCCACGGACCTGGAGCTCATCTGTACCCACACCTCAACACTGGCACTGcctcctgtACACCCTGCACAGATGACCAGATCCTGATGGCGGTATGCACCAGCGACTTtgcgGGTCGTGGCAGTATCCGTGGCGTTGACATGCCCTCGTCATCAGACCACTCCTCCGTTGCCGTGACGCTAAGCCGCCTGTTCCATCAGAAGAGCGGAGTGTTCTCTCTGGACGGAGCCAGAGGAAAGGGGTGGTCCGGACGTCTGAACACGCCCCTGCGGTGCCGGCTGCAACCGAGGGAGAAGGGGGAGTTCCTGTTCACGGGGGCAGTGAGGTTCGGAGAGGCGTGGCTTGGCTGCTCCCCGCACTACCGCCACTTTCTGAAGCTCTACAGGACCGCCCTGGAGACAGGAAGTAACCCCTGTCACATGGACATGGACACAGACTGAGGCACGCCCCTTCCGCCCAGGAGACAACCAATCAGGgaacaggattgggaaacaaaCTCAGCGAatcagggacacagagagagagggctgggtcGCTGGCTGGACTGACAGGGCCCTGATCCAATCAGAGGAGTGAAGTCGTAAAGGGGCGGAATCTTTGATATGACTGAGAGGTGGTTGGACGTGGTCCCAAGCCCTGCTAACCGATTGGCTGAAGCTCTTACAGTTGCCTAACAGCAAGGATAGTTGGCCTGTGTCTGAACAGTTCTAAAGCCATCTGTCGTCATAGAATGTCTTAagatgctggtgtgtgtgtgtgtctgtgtgtgtgtctgtctgtgtgtgtgtgtctgtgtgtttgtgcgcgtgtGTTGGAAATAGATGTAAATATGATCATTGTTGTAATGAAAGTTTGTTTCGTGAAAAGCTTTATGTTTACAGTTTAGAGGTTGTCTTCTGACAGAAGTGTATAGTGGGTTCCTGCACAGCGTGTGTGTCttagcgtgtttgtgtgtgtcttagcATGCTCTTGTGTGTCttagcgtgtttgtgtgtgcgcgctaGTGAGTGTGTGAACGTGTATGTACTatcctgtgaatgtgtgtgtgcgctagCGTGTGTGGTTCTGCACTAGCTTGTGTGAAGGTGTGtctgtgaaggtgtgtgtgtgaaggtgtgtgtgtgaaggtgtgtgtgcgaCTGTGTTAAAGTACAATAGCACTCTGGCTCTCTGTTCTAGGGAATAAACTATCTTCCTGGAACAAG

Function

NR:

description
PREDICTED: meteorin-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948937.1 True 2898 mRNA 0.51 5 11095533 11111355
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110510799 LOC106564209 coding downstream 27226 10999788 ~ 11068307 (-)
LOC118940077 LOC106564215 coding downstream 143102 10936035 ~ 10952431 (-)
LOC118940264 LOC106592432 coding downstream 190464 10891010 ~ 10905069 (-)
LOC118940261 LOC106564223 coding downstream 373675 10706916 ~ 10721858 (-)
LOC110510716 LOC106592827 coding downstream 835528 10221765 ~ 10260005 (-)
LOC118940265 b3gntl1 coding upstream 9869 11121224 ~ 11170715 (-)
LOC118940269 LOC106596101 coding upstream 100844 11212199 ~ 11238602 (-)
LOC118940267 mycbpap coding upstream 127333 11238688 ~ 11291562 (-)
LOC118940273 NA coding upstream 452888 11564243 ~ 11566831 (-)
LOC110485436 LOC106592457 coding upstream 456408 11567763 ~ 11577945 (-)
G1419989 NA non-coding downstream 19914 11074164 ~ 11075619 (-)
G1419988 NA non-coding downstream 23830 11071175 ~ 11071703 (-)
G1419977 NA non-coding downstream 42315 11052834 ~ 11053218 (-)
G1419976 NA non-coding downstream 44206 11050807 ~ 11051327 (-)
G1420020 NA non-coding upstream 73381 11184736 ~ 11185499 (-)
G1420039 NA non-coding upstream 115736 11227091 ~ 11227991 (-)
G1420032 NA non-coding upstream 136198 11247553 ~ 11251915 (-)
G1420047 NA non-coding upstream 140739 11252094 ~ 11252594 (-)
G1419810 NA other downstream 401220 10621271 ~ 10694313 (-)
G1419766 LOC106566240 other downstream 422026 10543428 ~ 10673507 (-)
G1419772 LOC106592307 other downstream 581661 10513380 ~ 10513872 (-)
G1420025 NA other upstream 96340 11207695 ~ 11208806 (-)
G1420640 NA other upstream 768443 11879798 ~ 11882819 (-)
G1420677 NA other upstream 912359 12023714 ~ 12024024 (-)
G1420686 NA other upstream 942465 12053820 ~ 12054208 (-)
LOC110487206 LOC106606788 other upstream 950006 12056279 ~ 12072151 (-)

Expression

LOC118940266(LOC106592549) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

LOC118940266(LOC106592549) Expression in each Bioproject

Bar chart with 20 bars.
LOC118940266(LOC106592549) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network