XLOC_033182 (rbl1)


Basic Information

Item Value
gene id XLOC_033182
gene name rbl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 51549203 ~ 51573975 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064465
TAGCATCAGGAGGTCAGCGGCGCCCCGGGTAAACTCCGTGTTTAACCCGAACACATTTTTTTGGGACATTTAACGGATTTTAACAGATTCCAGCTATGCGTGGGGATGAAACGGATACAGAGTCCGTCAGATCAGCCGATGGCTCGATCCGGAGTAATTTCGAGGCGCTTTGTCAGGAGCTCAATATGGACGAAGAGACGGCAGCTGAAGCGCTTCAGAACTTCAGATCCATCTGGAACACTTACACGCTGGAGGGTGATGTCATGCACTGGCTGGCCTGCTCTCTGTACGCTGCCTGTAGGAAGAGCTCCATCCCTACAGTGGGACGGGGTGTGATGGAGGGCAACTGTGTTTCCCTTACAAGGATCTTGCGCTCTGCAAAACTCAGTTTGATCCAGTTCTTCAGCAAGATGAAGAAATGGTCAGACATGGCGAATCTCTGTCAGGACTTTCGCAGCCGCATAGGTCGACTAGAGCGCAATTTTGAAGTGTCGACAGTGATTTTTCGCAAATTTGAGCCGATATTTCTGGACATGTTTCAGAATCCTCAGAGTGAACCTCCTCGCATGCCTAGAAGTCGCAAACACCGacgtCTTCCATGCCACATCAGTGATGTCTTCAAGTTCTGTTGGACCCTCTTTGTTTATACAAAAGGTAATTTCCACATGATCGGAGATGATTTGGTCAACTCCTATCACCTCCTCCTCTGCTGTCTGGACCTGGTGTTTTGCAACGCTCTCATGTGCTCCAACAGGAAAGATCTCATCAATCAGAATTTCAGAGGCCTGCCGAAAGACACAGAAAACCTGAAAGAGATGCCCTGTGTCATTGACAAGTTGTGTGAACTGCATGATGGGTTGGTGGTGGAGGCCAAAGGCATAAAGGAGCACTACTTCAAGCCCTACATAAAGACCCTGTTTGAGAAAAGAATGTTAAAAGGTGATGTTGAAACTCTGACTGAATTACTGGACACTCCAAATTTCCAAGATAACAATAAAGCCATAAATCGTGATTATGAGGAGtttgttttgactgtgggggattTTGATGAGCGAGTGTTTTTGGGGGCTGATGCAGACGAGGAGATCGGCACACCGCGCAAATCCACCGCTGAACCTCCTTCAGGTCATCTCTCTGCCCGCATGCAGGTGGAGAACAACCTTCAGCAGCACTTTGAGAAGACGCGTTCCCTTGCTCCCTCTACTCCTCTAACGGGTCGACGGTATTTAAAGGAGAAGGAAGTGCTGGTCACGCCTGTTTCTTCAGCCACCCAAAGTGTGAGTCGACTGCAAAGCATGGTGTCTGGTCTCCGAAACGCACCGAGCGACGCTCTGCTTCAGATATTTATTTCCTGTTCTCGAAACCCCACTGAATCCATTCTGAATCGGGTGAAAACCTTGGGGGAAAAGTTCAAACAGGCCTACACTAATCCCACAGATGACCTGCCGGGAGCACATATGGACTTTGCAGAGAAACGTCTGAAGCTGGCCGAGATCTTGTACTTTAAGATCCTGGAGAATGTAATGACTCAAGAGATGAAGAGATTACAAGGCAAAGACTGGGCAGTCCTGTTGGAGCAGGAGGTGCTCCATTGCTCTCTTTTGGCCTGCTGTCTGGAGGTGGTGCTGTTCTCATACAGCTCGCAAAGAACTTTCCCCTGGATACTGGAAATCTTTCAGATCCCACCTTTCTACTTTTACAAGGTGATTGAGGTGTTCATCCGCTCAGAGGAGGGTTTATCCAGAGACATGGTGAAGCATTTGAACAGTATAGAGGAACAGGTGCTGGAAAGCAGAGCGTGGACAAGAGATTCAGCCCTGTGGAATGCTCTTAACAAGGATAACAATAAAGTTCCTACTGTAGAAGAGGTGAATTTTCCTAGCAATTTTGATACAGGCAACAATGCAGGTGGTCCCACTCACCTCCCATTGGTGGCGCTGTCCCCCATCATTCACCCTCGCCTCAGGGAGGTCCGCACTGGCCTGGGCTCCAGCGCACGCAAAGACGTCCCTCAATCCCCCATCTCTCTCCATGATCGCTACAGCTCTCCAGCTGCTGGCAGCGCAAAGAGACGCTTGTTTGGTGACGATGCTCCACCACAATCCCCAGTAAAAAGGATCTCTGTCACTCCCATCAAAATCATTCCCAGTGGCTTGGAAAACCAGACCACCACAACCACTGTCCTCTCCATGGCCACCGGAAATGGCCAGCAGCTCACCATTCCACTGCCAGTGGTGAAGAATGAGGCAGGCGGCATCACAGTCATCCAGCTTCAGGCCAGCGATATGAATCCTCTCACTGCTCAAGTTTTATTGACCGCTTCCCCGAGCCGGCCTGCTCTAGCCGCTCCAGCTATCAGCTCTGACTCACAGCCACCACCTGCCAATAAACCTCGCCGCACGGGCTCACTCGCACTCTTCTTCAGGAAGGTGTATCATTTAGCCAGTGTGCGTCTGCGAGACCTGTGTCTGAAGCTGGATATCTCCTCAGAGCTAAGAGGGAAGATCTGGACGTGTTTTGAGCACTCTCTCCTGCACTGCACTGACCTGATGAAGGACAGACACCTGGACCAGCTGCTGCTTTGTGCTGTTTACATCATATCAAGGATCACGAAAGAAGAGCACACTTTTCAGGACATTATGAAATGCTACCGAACACAACCACAGGCCAACAGTCATgTGTACCGCAGTGTTTTAATAAAGAGGCGTCCCAAAGTGCAGCAGGCTGACGAGAACATGGAAGTCGATCCTCCAGCAGACCAGTccAATGAGAGGACTGATCAGGCAGCCAATGAGAGGAGCGATCAGGCTGACAGAACACAGACTGTCTTCGAATCAGAGGAAAGAGGGGATCTCATCCAGTTCTACAACAACATTTATGTGTCAAAGATGAGATCATTCGCTTTCAAATATGCACTTTCCACGCTTGATAACAGGATGGAAGCTCCTCCGTTATCTCCGTTCCCCTCCGTTCGGTCTCACACTCTCTCTCCTCGCCGTGTGTCTCAGAAACACTCCATCTTTGTGTCTCCTCATAAAAACAGCTCCAGTCTCACGCCCAGCACTGCATACACATACAGGTTCACTGGAAGCCCTTCAAAGGAGCTGAGTGACATAAACCAGATGATCCGTCAGGGTGGCGTGAGCAAGAAGCGGGCGTTCACCATGGAGGGCGACGAGACCGAATCTCCGTCTAAATGTCTCCGGCAAGAGAACGACGACGTGCTGCTCAAACGCCTCCAGGACGTGGTCAGCGAGAGAGCCAGTCTGTGATCTGCTTTCATTGCagactcaattaaaaaaaaaaaaaagccaaaaactgAACTTTGTTTGAGTTGCTCAGCGACTCCAGGATGTAGAGAGAGAGATGTGACAATTATTAATTATGTCGCAGATTAATAACACaaccaaaaataacaaaaacagctCGTGCAGCTCG
>TCONS_00064466
GCACTGCACTGACCTGATGAAGGACAGACACCTGGACCAGCTGCTGCTTTGTGCTGTTTACATCATATCAAGGATCACGAAAGAAGAGCACACTTTTCAGGACATTATGAAATGCTACCGAACACAACCACAGGCCAACAGTCATgTGTACCGCAGTGTTTTAATAAAGAGGCGTCCCAAAGTGCAGCAGGCTGACGAGAACATGGAAGTCGATCCTCCAGCAGACCAGTCCAATGAGAGGAGCGATCAGGCTGACAGAACACAGACTGTCTTCGAATCAGAGGAAAGAGGGGATCTCATCCAGTTCTACAACAACATTTATGTGTCAAAGATGAGATCATTCGCTTTCAAATATGCACTTTCCACGCTTGATAACAGGATGGAAGCTCCTCCGTTATCTCCGTTCCCCTCCGTTCGGTCTCACACTCTCTCTCCTCGCCGTGTGTCTCAGAAACACTCCATCTTTGTGTCTCCTCATAAAAACAGCTCCAGTCTCACGCCCAGCACTGCATACACATACAGGTTCACTGGAAGCCCTTCAAAGGAGCTGAGTGACATAAACCAGATGATCCGTCAGGGTGGCGTGAGCAAGAAGCGGGCGTTCACCATGGAGGGCGACGAGACCGAATCTCCGTCTAAATGTCTCCGGCAAGAGAACGACGACGTGCTGCTCAAACGCCTCCAGGACGTGGTCAGCGAGAGAGCCAGTCTGTGATCTGCTTTCATTGCagactcaattaaaaaaaaaaaaaa

Function

symbol description
rbl1 Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and negative regulation of G1/S transition of mitotic cell cycle. Predicted to act upstream of or within regulation of cell cycle; regulation of cell division; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Predicted to be active in chromatin. Orthologous to human RBL1 (RB transcriptional corepressor like 1).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0030154 cell differentiation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0051302 regulation of cell division biological_process
GO:2000134 negative regulation of G1/S transition of mitotic cell cycle biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0001102 RNA polymerase II activating transcription factor binding molecular_function

KEGG:

id description
ko04350 TGF-beta signaling pathway
ko04110 Cell cycle
ko04218 Cellular senescence
ko05203 Viral carcinogenesis
ko05165 Human papillomavirus infection
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-030131-8179 Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and negative regulation of G1/S transition of mitotic cell cycle. Predicted to act upstream of or within regulation of cell cycle; regulation of cell division; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Predicted to be active in chromatin. Orthologous to human RBL1 (RB transcriptional corepressor like 1).

Ensembl:

ensembl_id ENSDARG00000008141

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064465 False 3438 mRNA 0.50 22 51549203 51573975
TCONS_00064466 True 753 mRNA 0.49 6 51549331 51556308

Neighbor

gene id symbol gene type direction distance location
XLOC_033181 NA coding downstream 7715 51528763 ~ 51541488 (-)
XLOC_033180 ptprt coding downstream 162507 51009981 ~ 51386696 (-)
XLOC_033179 BX530017.1 coding downstream 792755 50754501 ~ 50756448 (-)
XLOC_033178 BX530017.2 coding downstream 801658 50742315 ~ 50747545 (-)
XLOC_033177 pigu coding downstream 818454 50713800 ~ 50730749 (-)
XLOC_033183 chd6 coding upstream 1949 51575924 ~ 51666739 (-)
XLOC_033184 blcap coding upstream 195785 51769760 ~ 51771634 (-)
XLOC_033185 psmf1 coding upstream 222321 51796296 ~ 51811095 (-)
XLOC_033186 NA coding upstream 452516 52026491 ~ 52034656 (-)
XLOC_033187 rims4 coding upstream 507777 52081752 ~ 52156427 (-)
XLOC_033174 NA non-coding downstream 1043765 50457968 ~ 50505438 (-)
XLOC_033172 NA non-coding downstream 1168991 50359657 ~ 50380212 (-)
XLOC_033198 BX649282.5 non-coding upstream 1349398 52923373 ~ 52923489 (-)
XLOC_033199 BX649282.4 non-coding upstream 1459021 53032996 ~ 53033111 (-)
XLOC_033203 NA non-coding upstream 1678582 53252557 ~ 53258068 (-)
XLOC_033212 NA non-coding upstream 2590957 54164932 ~ 54174073 (-)

Expression


Co-expression Network