LOC110487206 (LOC106606788)


Basic Information

Item Value
gene id LOC110487206
gene name LOC106606788
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 12056279 ~ 12072151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948977.1
ATAAGTGTATTTCCCTTCAGGTTGTGTTCCCCGTTTCTGCCCCTGTAGAAGTAACTAGTGTTGATGAGGATGATCCTGGTGGCTCTGCTGGTGCCTCTACTGGTTCTGTCCAGCGCTGGACATACCTCAGGTACGATTGTCACCAGCTGCGAGGCGTGTCACGAACAAGCCGTCTGCCGCACCTCCGCCATGGCAGGTGACATCACATGCACCTGTAAGAAGGGCTTCTCCGGAGACGGTCTCATCTGTTTACCTGGCCACACCGCCGCCGCCGACCACCACGCCCCTCGCCGTGTCCGCCGCTCCTACCCCACCTCCAACACCAACCTTGCCCATGTCCGGTTCAGCTGCGGCTTCAACGAGTGCGCCGACGGGGAGGACTGCATCACGGTCGACGGCATCCAGCAGTGCTCCAACCCCTGTAAGATCTACACGGTCCTGAACGACGCCTGGCGTTCCACCAACAACCACGTGGGCAACAAGCACTGTGACCGCAACGTCCACTGGGACGGCTATTACCGCATGTTCATCGGCAACCAGAGCGTGTCCATGCCGGACAAGTGCGTGGATTCCTTCAAGTGCGGCACCCAGGCTCCCTTGTGGCTGGCGTTTCCTCCCCCCCAGCAGGTGGATGAAATTGTCCAGAGTGCAGTGTGCGCCAGCTTCAATGGTGACTGCTGCTGGGTGCAGTCTCAGCCCATCCACGTCAAGGCATGCCCTGGGAACTACTTTGTGTACAAGTTCGTCATGCCTCCCGGGTGCTACTTCGCCTATTGTGCATATGTGACAGCGCCCACCACAACACCAAAACCAGTCACATCTACAGAAACACCAGTAGAGAACAATcgcaccacaacaacaacacagtcacagGTTGCCACGACTACGCCAAAAGCAATGTGTGGTACctgcagagagggggagacctGCGTGAGCACCGATGGGGTCACTTGGCGGTGTGAGAGGTCAGATCAGCCTGTTTTGCTGCACCCAGAGGTAGTATGTGGGCGGAGCCTGGTACAGGTGGGTCTCAACAGGACTAACCTGGAGGCCGCTGGTCTGGACGCCACCACCGCTAACCTGGCCGACCCCCGGTGTAACGCTCACGAAGAGCGTGGCGGCATGGTATGGTACCAGGTGGAGCGCAAGGAGGGCGCCTGCGGAAACACTCTGGAGACAAACGGAACTGACGCCATCTTTTCCAACAGTTTATTCATCTACCACGTTCACGACGTGTCCTTCAGCCGACCCGTGAGCGTGCCTTTCTCCTGTGCCTACCCTCTGGAATCAGAGACCAGCCTGGATGTGGCCATCAAACCCTACCTGTCGCTGAAGGGTTCCAGAGTCGGTAAAGGCTCCAGAGTGGGCTCCAACATGACTCTGTACCACAGCGACGACTTCACAAAGGCTTACCCAGCGGGCGGAGTCACCTTGCCGGTGGGTTCCGTGCTGCACGTGGGCGTGTCCGTAGAGGAGTCCGAGACGGAGCGTTTCGTGGTCGTTCTGGAGGACTGCTATGCCACGCAATCCCCCGACCCTAAAGACATCATGCGATACTACATCATTCAGAACAAATGTCCGACTGAATTCCGTCaggtgagggtggaggagagCGGCTCGTCTCTCAGGGCTCGCTTCTCTGCTCTGCTGTTCCTGTACCAGGGGGACTACCGGGACGTCTTCCTGCACTGCAGACTCAGCCTGTGTGACCAGAGGAGCTCCTCCTGCACTCCAgTGTGCGCCAAAAGGAAATACCGCTCTGTCACCCCCTCTGTCCCCCTCGAACCCGTCACCATCGGACCAATCACCTGGTCCCAAAATGAAGATTGAACTTGTCATGCTTCCTGTATCCTAAACAATTAATCCAGTTATCTAAATAATTTATGTAAAGTTCATAAATTATGCATAGGTGAGATGGGTTTATGTCCTAAACCAAGCCATTTCTTATTTAATATCTTACATACATCCAGTTATAAATAATGATATTTTAAGGATATTTTTATATTTCTCGTATTTCTAGAATGATTAGTAAAATATTTCTATTTGAACCAACACAATTGAATTGTTGAACCTTTAACTAAGGCTTGAGGCCAGAAAGTGTATGTGCTGGTCACTAATGTTTGTAAGGTGAAAATACATGGACATCTAGTTGTGATTATATCAACACAAACATCTCCCTTTCTGGTTTAAGCTGCAGCTATAATATCATTTCATCCTATTGCTCTAAAATGCTTTGTATGTGCAGTCATTTAATAGTGTTAATAAAATATAAATGATAAATATATGTATACATGTATTAATGTGTGAATAATGTACTGGGCATGTAGTGTACTATTGCTATAGCTTAGTTCTTTCTCTTTGGGATCAGTCAAGACAATGATGAACCAGTAGGTGTCAGTATTACCCCAGAAACACTGTTAGAAGTCTGCATCATCACAACACAACAGCAGCAGAT
>TU1625698
CTGCTGGGTGCAGTCTCAGCCCATCCACGTCAAGGCATGCCCTGGGAACTACTTTGTGTACAAGTTCGTCATGCCTCCCGGGTGCTACTTCGCCTATTGTGCATATGTGACAGCGCCCACCACAACACCAAAACCAGTCACATCTACAGAAACACCAGTAGAGAACAATcgcaccacaacaacaacacagtcacagGTTGCCACGACTACGCCAAAAGCAATGTGTGGTACctgcagagagggggagacctGCGTGAGCACCGATGGGGTCACTTGGCGGTGTGAGAGGTCAGATCAGCCTGTTTTGCTGCACCCAGAGGTAGTATGTGGGCGGAGCCTGGTACAGGTGGGTCTCAACAGGACTAACCTGGAGGCCGCTGGTCTGGACGCCACCACCGCTAACCTGGCCGACCCCCGGTGTAACGCTCACGAAGAGCGTGGCGGCATGGTATGGTACCAGGTGGAGCGCAAGGAGGGCGCCTGCGGAAACACTCTGGAGACAAACGGAACTGACGCCATCTTTTCCAACAGTTTATTCATCTACCACGTTCACGACGTGTCCTTCAGCCGACCCGTGAGCGTGCCTTTCTCCTGTGCCTACCCTCTGGAATCAGAGACCAGCCTGGATGTGGCCATCAAACCCTACCT
>TU1625701
AGTAACTAGTGTTGATGAGGATGATCCTGGTGGCTCTGCTGGTGCCTCTACTGGTTCTGTCCAGCGCTGGACATACCTCAGGTACGATTGTCACCAGCTGCGAGGCGTGTCACGAACAAGCCGTCTGCCGCACCTCCGCCATGGCAGGTGACATCACATGCACCTGTAAGAAGGGCTTCTCCGGAGACGGTCTCATCTGTTTACCTGGCCACACCGCCGCCGCCGACCACCACGCCCCTCGCCGTGTCCGCCGCTCCTACCCCACCTCCAACACCAACCTTGC

Function

NR:

description
PREDICTED: pancreatic secretory granule membrane major glycoprotein GP2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948977.1 False 2455 mRNA 0.51 9 12056279 12072151
TU1625698 False 648 TUCP 0.57 4 12061361 12070018
TU1625701 True 283 TUCP 0.61 2 12070364 12072102

Neighbor

gene id symbol gene type direction distance location
tecrb tecr coding downstream 70650 11948276 ~ 11985629 (-)
LOC110493402 NA coding downstream 214020 11837021 ~ 11842259 (-)
LOC118940276 NA coding downstream 410163 11645351 ~ 11646116 (-)
LOC110485438 NA coding downstream 446818 11600908 ~ 11609461 (-)
LOC110485436 LOC106592457 coding downstream 478334 11567763 ~ 11577945 (-)
LOC110539021 NA coding upstream 14243 12086394 ~ 12119790 (-)
LOC118940280 NA coding upstream 53661 12125812 ~ 12128849 (-)
LOC110539022 NA coding upstream 81078 12153229 ~ 12165353 (-)
LOC110538735 LOC106606801 coding upstream 141798 12213949 ~ 12219585 (-)
LOC110538733 NA coding upstream 156005 12228156 ~ 12240023 (-)
G1420685 NA non-coding downstream 7783 12048261 ~ 12048496 (-)
G1420683 NA non-coding downstream 11802 12043957 ~ 12044477 (-)
G1420681 NA non-coding downstream 20105 12035226 ~ 12036174 (-)
G1420680 LOC106591274 non-coding downstream 21933 12030724 ~ 12034346 (-)
G1420672 NA non-coding downstream 72902 11982736 ~ 11983377 (-)
G1420693 NA non-coding upstream 1254 12073405 ~ 12073613 (-)
G1420701 NA non-coding upstream 31111 12103262 ~ 12103991 (-)
G1420711 NA non-coding upstream 43066 12115217 ~ 12115468 (-)
G1420702 NA non-coding upstream 49076 12121227 ~ 12129219 (-)
G1420703 NA non-coding upstream 49408 12121559 ~ 12122182 (-)
G1420686 NA other downstream 2071 12053820 ~ 12054208 (-)
G1420677 NA other downstream 32255 12023714 ~ 12024024 (-)
G1420640 NA other downstream 173460 11879798 ~ 11882819 (-)
G1420025 NA other downstream 847473 11207695 ~ 11208806 (-)
LOC110510799 LOC106564209 other downstream 1001231 10999788 ~ 11068307 (-)
LOC118940282 LOC106593131 other upstream 185407 12184586 ~ 12271974 (-)
G1421550 NA other upstream 265495 12337646 ~ 12340993 (-)
G1421639 LOC106592110 other upstream 464881 12537032 ~ 12538441 (-)
LOC110515463 LOC106564142 other upstream 542204 12608888 ~ 12639486 (-)
G1421689 NA other upstream 630521 12702672 ~ 12719170 (-)

Expression


Co-expression Network