XLOC_033197 (rbpjl)


Basic Information

Item Value
gene id XLOC_033197
gene name rbpjl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 52757433 ~ 52796212 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064489
TGAACACCATGCAGGACCAAAGGAAAGAAGACAGAGATACAGGTCTTTCCATCGTGGACTCGACGGACTCTCACCTGTACACACCAGACGCGTGTTTCACTCACCTCAGGGAGGATCAATCATTCTCCTCCTTGCTGAAAGTGACCAGAGACTCAGTGAGGCAATACCTTCAGTTCAGACCTGACCAATCTGTGACCATTTTACATGCCAAAGTTGCCCAGAAGTCCTACGGCAATGAGAAGAGGTTTTTCTGTCCTCCTCCTTGTGTATACCTCTCTGGACATGGATGGAAAGTCAGACAAGAGCAGTTTAAAGCATCAGGTCTAAATGAATCGGCTTGTCGGATTTTCGGTTACATGGGTCTGGACAGCTCCAATGATCCACGGACAGACAGTTTCAAGCTGAGCTTTGAGGAGCAGACAGACAAGAAGATGTTTGCCTGCGCTAAAACCTTGTACATCTCAGACACAGACAAACGGAAGCACTTCCGCCTGCTGCTACATCTGTTCCACAACGGAGGGCAAGAAATCGGCACGTTCAACAGCAGACTCATTAAAGTCATCTCTAAACCATCGCAGAAGAGACAGTCCATGAAAAACGCCGACCTGTGTATCTCCTCAGGCTCAAAAGTGTCATTGTTTAACCGATTGCGGTCGCAGACGGTCAGTACACGGTACCTCGCGGTGGAAGACGGGGCTTTTGTTGCCAGCGCAAGACAGTGGACTGCTTTTACTGTTAATTTAGTGGAGGAGACGCAGGCCGTGCACAGTGAATACACAATGTGTGAGAGCTACATCTGCTACGGCTGTGTGGTTCAGCTGGTCTGCACTGACTCCGGAGTGGCACTGCCACCAATGGTAATTCGTAAAGTGAACAAGCAGCAGGCATGTCTAGACGTGGATGAACCTGTTTCTCAGCTTCATAAATGTGCTTTCCAGTTCCGAGGCAGCGACCACATGTACCTGTGCCTGTCTAATGAAAAAATCATACAGTTCCAGGCCTCTCCATGCCCTAAAGAGAGTAATAAGGTGTCATTGAATGATGGATCCTGCTGGACGATTATTGGAACAGAGGTGGTTGAATACAGCTTCAGTGAGAGTCTCACCGGTCATCCTGCAACCATCAGCCCTGTGCCTGTTATCAGCGGACTGGAGctgaATGGAGGTGGACATGTGGCCATGCTGGAGCTTCACGGAGAAAACTTCAGTCCACACTTAAGGGTCTGGTTCGGCAACATGGAAGCTGAGACCATGTTCAgGTCCTCCAGGTCTCTGCTGTGTGTGGTTCCTGATGTGTCTATATTGAGTGGTGAATGGAGATGGACGAGGCAGCCAATCACAGTGCCTTTATCTTTGATCCGATTGGACGGTCTGATCTACAGGAGCTGGTTCTCCTTCACGTACACCCCCGAGCACAGCGCCAGCTCCCAGACCAGCGGCTCCGGAGAGAGAAGCGCAGACTCAGACGCTCTCATAGACACCATACACCAGGAGTTCACACGCACCAACTTTCACCTGTTCATGcagagctgaacacacacactcacacacacatgcacagactcaaatgcacacacagacac
>TCONS_00064490
ccgtCTGTCTGCTGGGAAACTGCACTTTTATGTCCGTGGGGTCCTAATAAGAGGAAATTAAAACTGCCAGAAAATTgcaatgtGGAGGATCAATCATTCTCCTCCTTGCTGAAAGTGACCAGAGACTCAGTGAGGCAATACCTTCAGTTCAGACCTGACCAATCTGTGACCATTTTACATGCCAAAGTTGCCCAGAAGTCCTACGGCAATGAGAAGAGGTTTTTCTGTCCTCCTCCTTGTGTATACCTCTCTGGACATGGATGGAAAGTCAGACAAGAGCAGTTTAAAGCATCAGGTCTAAATGAATCGGCTTGTCGGATTTTCGGTTACATGGGTCTGGACAGCTCCAATGATCCACGGACAGACAGTTTCAAGCTGAGCTTTGAGGAGCAGACAGACAAGAAGATGTTTGCCTGCGCTAAAACCTTGTACATCTCAGACACAGACAAACGGAAGCACTTCCGCCTGCTGCTACATCTGTTCCACAACGGAGGGCAAGAAATCGGCACGTTCAACAGCAGACTCATTAAAGTCATCTCTAAACCATCGCAGAAGAGACAGTCCATGAAAAACTCTGCATTAATGTGCAATTCTGGAGGCTCAAAAGTGTCATTGTTTAACCGATTGCGGTCGCAGACGGTCAGTACACGGTACCTCGCGGTGGAAGACGGGGCTTTTGTTGCCAGCGCAAGACAGTGGACTGCTTTTACTGAGACGCAGGCCGTGCACAGTGAATACACAATGTGTGAGAGCTACATCTGCTACGGCTGTGTGGTTCAGCTGGTCTGCACTGACTCCGGAGTGGCACTGCCACCAATGGTAATTCGTAAAGTGAACAAGCAGCAGGCATGTCTAGACGTGGATGAACCTGTTTCTCAGCTTCATAAATGTGCTTTCCAGTTCCGAGGCAGCGACCACATGTACCTGTGCCTGTCTAATGAAAAAATCATACAGTTCCAGGCCTCTCCATGCCCTAAAGAGAGTAATAAGGTGTCATTGAATGATGGATCCTGCTGGACGATTATTGGAACAGAGGTGGTTGAATACAGCTTCAGTGAGAGTCTCACCGGTCATCCTGCAACCATCAGCCCTGTGCCTGTTATCAGCGGACTGGAGctgaATGGAGGTGGACATGTGGCCATGCTGGAGCTTCACGGAGAAAACTTCAGTCCACACTTAAGGGTCTGGTTCGGCAACATGGAAGCTGAGACCATGTTCAgGTCCTCCAGGTCTCTGCTGTGTGTGGTTCCTGATGTGTCTATATTGAGTGGTGAATGGAGATGGACGAGGCAGCCAATCACAGTGCCTTTATCTTTGATCCGATTGGACGGTCTGATCTACAGGAGCTGGTTCTCCTTCACGTACACCCCCGAGCACAGCGCCAGCTCCCAGACCAGCGGCTCCGGAGAGAGAAGCGCAGACTCAGACGCTCTCATAGACACCATACACCAGGAGTTCACACGCACCAACTTTCACCTGTTCATGcagagctga

Function

symbol description
rbpjl Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human RBPJL (recombination signal binding protein for immunoglobulin kappa J region like).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050307-4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human RBPJL (recombination signal binding protein for immunoglobulin kappa J region like).

Ensembl:

ensembl_id ENSDARG00000074148

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064489 False 1582 mRNA 0.50 12 52757433 52796212
TCONS_00064490 True 1494 mRNA 0.50 12 52757483 52788213

Neighbor

gene id symbol gene type direction distance location
XLOC_033196 AL954861.2 coding downstream 157 52756334 ~ 52757276 (-)
XLOC_033195 oser1 coding downstream 33532 52715708 ~ 52723901 (-)
XLOC_033194 sdc4 coding downstream 81803 52663097 ~ 52675630 (-)
XLOC_033193 gdf5 coding downstream 95609 52637308 ~ 52661824 (-)
XLOC_033192 uqcc1 coding downstream 190859 52521467 ~ 52566574 (-)
XLOC_033198 BX649282.5 coding upstream 127161 52923373 ~ 52923489 (-)
XLOC_033199 BX649282.4 coding upstream 236784 53032996 ~ 53033111 (-)
XLOC_033200 inka1b coding upstream 244968 53041180 ~ 53048291 (-)
XLOC_033201 gnai2b coding upstream 253954 53050166 ~ 53144336 (-)
XLOC_033202 slc38a3b coding upstream 351234 53147446 ~ 53204808 (-)
XLOC_033186 NA non-coding downstream 722777 52026491 ~ 52034656 (-)
XLOC_033181 NA non-coding downstream 1215945 51528763 ~ 51541488 (-)
XLOC_033179 BX530017.1 non-coding downstream 2000985 50754501 ~ 50756448 (-)
XLOC_033178 BX530017.2 non-coding downstream 2009888 50742315 ~ 50747545 (-)
XLOC_033174 NA non-coding downstream 2251995 50457968 ~ 50505438 (-)
XLOC_033203 NA non-coding upstream 456345 53252557 ~ 53258068 (-)
XLOC_033212 NA non-coding upstream 1368720 54164932 ~ 54174073 (-)
XLOC_033220 NA non-coding upstream 1701592 54497804 ~ 54523451 (-)

Expression


Co-expression Network