Fish Transcriptome and Expression Database

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model fish

XLOC_033199 (BX649282.4)

Basic Information

Item	Value
gene id	XLOC_033199
gene name	BX649282.4
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007117.7
NCBI id	CM002890.2
chromosome length	60270059
location	53032996 ~ 53033111 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064492
GCCAGAGCCATATCACCCttcagcccaagaccggttactcactgaatctaagcagggctgagcctggtcagtacctgggtgggagaccacatgggaacatTAGGTTGCTGTTGgca

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000107017

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00064492	True	116	rRNA	0.55	1	53032996	53033111

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_033198	BX649282.5	coding	downstream	109507	52923373 ~ 52923489 (-)
XLOC_033197	rbpjl	coding	downstream	236784	52757433 ~ 52796212 (-)
XLOC_033196	AL954861.2	coding	downstream	275720	52756334 ~ 52757276 (-)
XLOC_033195	oser1	coding	downstream	309095	52715708 ~ 52723901 (-)
XLOC_033194	sdc4	coding	downstream	357366	52663097 ~ 52675630 (-)
XLOC_033200	inka1b	coding	upstream	8069	53041180 ~ 53048291 (-)
XLOC_033201	gnai2b	coding	upstream	17055	53050166 ~ 53144336 (-)
XLOC_033202	slc38a3b	coding	upstream	114335	53147446 ~ 53204808 (-)
XLOC_033203	NA	coding	upstream	219446	53252557 ~ 53258068 (-)
XLOC_033204	rbm5	coding	upstream	230743	53263854 ~ 53282595 (-)
XLOC_033186	NA	non-coding	downstream	998340	52026491 ~ 52034656 (-)
XLOC_033181	NA	non-coding	downstream	1491508	51528763 ~ 51541488 (-)
XLOC_033179	BX530017.1	non-coding	downstream	2276548	50754501 ~ 50756448 (-)
XLOC_033178	BX530017.2	non-coding	downstream	2285451	50742315 ~ 50747545 (-)
XLOC_033212	NA	non-coding	upstream	1131821	54164932 ~ 54174073 (-)
XLOC_033220	NA	non-coding	upstream	1464693	54497804 ~ 54523451 (-)
XLOC_033221	dre-let-7a-6	non-coding	upstream	1473347	54506458 ~ 54506586 (-)
XLOC_033222	NA	non-coding	upstream	1714837	54747948 ~ 54754115 (-)

Expression

Co-expression Network