XLOC_000332 (sugt1)


Basic Information

Item Value
gene id XLOC_000332
gene name sugt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 27977297 ~ 28020042 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000563
cggtaatgctccaaaaatcTGGTTGCCAACCACTATAAAATCAGAAGAAGAAGAGCAAGGAAGTAGTGTGGGATTGACAGGCCCAATTATTTACTTCCTTTAACGCCGCTGTTCCCTCTCGAACTTTCTGCGGTTTCAGACGAAGTACGAAGTACGAAGAGTGGACCCATGGCAACTTGCGGGTACGAAATTTTGTcagttgtatgtatgtatatatgtaggcCTATGTATGCTTGCATGTATctatgtaggtgtgtgtgtataaaatgtaTGTGCCATACGTTATTATATGTGATTATTTTTTGTAGGCGTTACTCTGACAGTTTCATAGATGAGGATCCTAGGAGGGCCCTTGAGGAACTAAATGAAGCATTGGGAGAGAAAGCAGATAATGCTGAATGGCTCTGCCAGCGAGCTTATGCCTATATTCTGTTGAAAGAGTACACCAaAGCAATTGATGATGCCAAGAAAGCCCAAGACCTGCAGCCAGGACTAGCACTTCCCTTTCTAAGAATAGGAATTGCAGAGTATCACCTACATAACTTTGTCGCTGCTCATCAGGCCCTCACAGCAGGAAGAGACCTTGACAGTTCTGTTGAAGAATTTCAAACATGGATGCAGCACTGTGAAACTGAAATGGCGACACACATTCCAAACAAAACTTCAGATTTGCAAACTACAACCCATGTCAAACATGATTGGTACCAGACAGAGTCTCAAGTTGCAGTTACCATCATGGTAAAAAATGCCAAGAAGGAGGGTGTGATTGTCAGCTTTGGCGAAAGGGAGTTGACCGCTGTGGTAAAGCTTCCATCAGGAGAGGATTATTGTCTGAAGGTTCATCTTCTTCATCCTATTGTCCCACAGCAGAGCACATACAAGATCCTTTCAACCAAGATAGAGATTAAGATGAAGAAGACTGAAGCCATACAGTGGGAAAAACTTCAAGGAGAAGAGACACTCTCCAACGTGAAGCATTTTACTGCAAGCCAGTATCCATCGTCATCCCACTACACACGAAACTGGGACAAGTTAGTGGGAGAAATAAAGGAGGAGGAAAAGAAGGAAAATCTGGAGGGTGATGCTGCTCTCAACAAGCTTTTTCAACAGATCTATTCGGATGGCTCGGATGATGTCAGACGGGCAATGAACAAGTCTTTTATGGAATCAGGAGGCACTGTCCTCAGCACCAACTGGATAGATGTTGGTAAACGGAAAGTAGAGATGAACCCGCCTGATGACGTAgagtggaaaaaatattaaaataggtAGATGACATTGTCTAAACTACCATCACCAGTTTGTCCTTACCCACTTCTTCAGTTGGTCAGACTTCTTCCTTTGTCAGACCCAGAATAGTTCTGGAATAAAATGAGATTTTTAACTTTTCTCTCTCTAGAATTAGTTTGTGTTTAACTAAACTAGcctattacatttttaaagcatcACACATTAAAACAAATCAGCAGCTAAACATCTGTACTGAAAGTCACTTTTGCCGCTGTTAGGTCTCCACCTGTATAACAACATCTGTTAATTTTGATCACTGTTTTTATGTACTTGTGCGTTCCTAAATATGCTTTTGACATgctgtaaataaatgtttcttttttttcttgctctGTGATTGGGGTGCCCTTGGTCTCTTATCAAtcttttacatcttgtaaagaaCTCTTGCATATTTTGAAGAAACTCTTTTTCattcagcaaaataaataaatcaataaatgcgTTACACATTATGCTTACTGGTTGTCTTATaagatttatatttataaatttttttgcaatttatatataataaacacaaCTACaactgcaagcagcaattattgGGGCCGAGCAGCTCAGCGACCAGATTATAAAAAAGTTCGACACGACAAGTTACAGAGCTACTGAAAAATTCTATAGATGTTTAGCCAAATTTGGTGGAAATTGGGCTAATGATCTATGGACAgttcaaaacaacagatttttaaaCTAGTTCAAGATGGTGGACAGGAAGTCGTGTCAGTTAGGGAATAAATTATCAATGTTCtctatagggctgcacgattctggctaaaatgagaatcactttttttttttaaatttaaaatcaagatcattatttctcatgattctgtagatgtaaaataaaggttattataagaaggctattattattattgttaaacatatggtaaaacaacactaataatactaGGCTTATGTGTAggtttactgttggttaaaatactgcattttttatagtcttggaatggtggacttgaacagactatCAATATGTCCTATTTGTTATTTCACAGTAAAGTTACGATATCAGAATGCTACTCTTTATAATTCTAAAGCTGAAtcatgtttgagacatatgcttgtcatttgtcatttagagcattattagaccattttttactggtaaaatgagacattgGTCATTATCAGCTTCCTTCTTGCATTATCTTCAACATCATCCTAGCTAGAGTAGTTATATTGACaccataaacatttattttcatgcacaacaccaTGCGttagctatgaaagaaaaaac
>TCONS_00000564
ATAAAATCAGAAGAAGAAGAGCAAGGAAGTAGTGTGGGATTGACAGGCCCAATTATTTACTTCCTTTAACGCCGCTGTTCCCTCTCGAACTTTCTGCGGTTTCAGACGAAGTACGAAGTACGAAGAGTGGACCCATGGCAACTTGCGGGCGTTACTCTGACAGTTTCATAGATGAGGATCCTAGGAGGGCCCTTGAGGAACTAAATGAAGCATTGGGAGAGAAAGCAGATAATGCTGAATGGCTCTGCCAGCGAGCTTATGCCTATATTCTGTTGAAAGAGTACACCAaAGCAATTGATGATGCCAAGAAAGCCCAAGACCTGCAGCCAGGACTAGCACTTCCCTTTCTAAGAATAGGAATTGCAGAGTATCACCTACATAACTTTGTCGCTGCTCATCAGGCCCTCACAGCAGGAAGAGACCTTGACAGTTCTGTTGAAGAATTTCAAACATGGATGCAGCACTGTGAAACTGAAATGGCGACACACATTCCAAACAAAACTTCAGATTTGCAAACTACAACCCATGTCAAACATGATTGGTACCAGACAGAGTCTCAAGTTGCAGTTACCATCATGGTAAAAAATGCCAAGAAGGAGGGTGTGATTGTCAGCTTTGGCGAAAGGGAGTTGACCGCTGTGGTAAAGCTTCCATCAGGAGAGGATTATTGTCTGAAGGTTCATCTTCTTCATCCTATTGTCCCACAGCAGAGCACATACAAGATCCTTTCAACCAAGATAGAGATTAAGATGAAGAAGACTGAAGCCATACAGTGGGAAAAACTTCAAGGAGAAGAGACACTCTCCAACGTGAAGCATTTTACTGCAAGCCAGTATCCATCGTCATCCCACTACACACGAAACTGGGACAAGTTAGTGGGAGAAATAAAGGAGGAGGAAAAGAAGGAAAATCTGGAGGGTGATGCTGCTCTCAACAAGCTTTTTCAACAGATCTATTCGGATGGCTCGGATGATGTCAGACGGGCAATGAACAAGTCTTTTATGGAATCAGGAGGCACTGTCCTCAGCACCAACTGGATAGATGTTGGTAAACGGAAAGTAGAGATGAACCCGCCTGATGACGTAgagtggaaaaaatattaaaataggtAGATGACATTGTCTAAACTACCATCACCAGTTTGTCCTTACCCACTTCTTCAGTTGGTCAGACTTCTTCCTTTGTCAGACCCAGAATAGTTCTGGAATAAAATGAGATTTTTAACTTTTCTCTCTCTAGAATTAGTTTGTGTTTAACTAAACTAGcctattacatttttaaagcatcACACATTAAAACAAATCAGCAGCTAAACATCTGTACTGAAAGTCACTTTTGCCGCTGTTAGGTCTCCACCTGTATAACAACATCTGTTAATTTTGATCACTGTTTTTATGTACTTGTGCGTTCCTAAATATGCTTTTGACATgctgtaaataaatgtttcttttttttcttgctctGTGATTGGGGTGCCCTTGGTCTCTTATCAAtcttttacatcttgtaaagaaCTCTTGCATATTTTGAAGAAACTCTTTTTCattcagcaaaataaataaatcaataaatgcgTTACA
>TCONS_00000565
TTGACAGGCCCAATTATTTACTTCCTTTAACGCCGCTGTTCCCTCTCGAACTTTCTGCGGTTTCAGACGAAGTACGAAGTACGAAGAGTGGACCCATGGCAACTTGCGGGCGTTACTCTGACAGTTTCATAGATGAGGATCCTAGGAGGGCCCTTGAGaAGCAATTGATGATGCCAAGAAAGCCCAAGACCTGCAGCCAGGACTAGCACTTCCCTTTCTAAGAATAGGAATTGCAGAGTATCACCTACATAACTTTGTCGCTGCTCATCAGGCCCTCACAGCAGGAAGAGACCTTGACAGTTCTGTTGAAGAATTTCAAACATGGATGCAGCACTGTGAAACTGAAATGGCGACACACATTCCAAACAAAACTTCAGATTTGCAAACTACAACCCATGTCAAACATGATTGGTACCAGACAGAGTCTCAAGTTGCAGTTACCATCATGGTAAAAAATGCCAAGAAGGAGGGTGTGATTGTCAGCTTTGGCGAAAGGGAGTTGACCGCTGTGGTAAAGCTTCCATCAGGAGAGGATTATTGTCTGAAGGTTCATCTTCTTCATCCTATTGTCCCACAGCAGAGCACATACAAGATCCTTTCAACCAAGGTATGATTAAAACATGCTTGTTTAtattgtggg
>TCONS_00000566
ACTTCCTTTAACGCCGCTGTTCCCTCTCGAACTTTCTGCGGTTTCAGACGAAGTACGAAGTACGAAGAGTGGACCCATGGCAACTTGCGGGCGTTACTCTGACAGTTTCATAGATGAGGATCCTAGGAGGGCCCTTGAGGAACTAAATGAAGCATTGGGAGAGAAAGCAGATAATGCTGAATGGCTCTGCCAGCGAGCTTATGCCTATATTCTGTTGAAAGAGTACACCAaAGCAATTGATGATGCCAAGAAAGCCCAAGACCTGCAGCCAGGACTAGCACTTCCCTTTCTAAGAATAGGAATTGCAGAGTATCACCTACATAACTTTGTCGCTGCTCATCAGGCCCTCACAGCAGGAAGAGACCTTGACAGTTCTGTTGAAGAATTTCAAACATGGATGCAGCACTGTGAAACTGAAATGGCGAGTATGTATaacgtaaatttttttttaattcaatttcagTTCGgggattgtgtgtatgtgtatgtctaATACAATAGTTTTCTGATTTTTTTAGCACACATTCCAAACAAAACTTCAGATTTGGTAAGTGTCTGTTTACTGTCTTTATCTGTATGTAACTGGAAAAGAAATATACAGTATTATGCTAGTGCTTTAATTTTATTGCCTGG
>TCONS_00000567
aagggtaaagaggctgtagaagttctgatattgcagaatatcgcacagctatcagccaatcagatttgagaaccagacagaactgttgtgtgcgtgcgtgcgtgcgtgtgtatatatgtatgtatatgtgtgtgtatataaagtaTAGTATATACTATATAAGTATATACTATACAAGtaagataaaatattatgtactgtcttaatgctaaagataaaagaaatcagttattaaaactattatgtttaaaaatgtgttgaggAAAAAAGATATTTTCCTCAAActgaaattgaggaaaaaatatacagggtggcTAAGGATTCAGGAAGaAGCAATTGATGATGCCAAGAAAGCCCAAGACCTGCAGCCAGGACTAGCACTTCCCTTTCTAAGAATAGGAATTGCAGAGTATCACCTACATAACTTTGTCGCTGCTCATCAGGCCCTCACAGCAGGAAGAGACCTTGACAGTTCTGTTGAAGAATTTCAAACATGGATGCAGCACTGTGAAACTGAAATGGCGACACACATTCCAAACAAAACTTCAGATTTGCAAACTACAACCCATGTCAAACATGATTGGTACCAGACAGAGTCTCAAGTTGCAGTTACCATCATGGTAAAAAATGCCAAGAAGGAGGGTGTGATTGTCAGCTTTGGCGAAAGG

Function

symbol description
sugt1 Predicted to be involved in protein stabilization. Orthologous to human SUGT1 (SGT1 homolog, MIS12 kinetochore complex assembly cochaperone).

GO:

id name namespace
GO:0031647 regulation of protein stability biological_process
GO:0050821 protein stabilization biological_process
GO:0005575 cellular_component cellular_component

KEGG:

id description
ko04621 NOD-like receptor signaling pathway
ko04626 Plant-pathogen interaction

ZFIN:

id description
ZDB-GENE-041114-56 Predicted to be involved in protein stabilization. Orthologous to human SUGT1 (SGT1 homolog, MIS12 kinetochore complex assembly cochaperone).

Ensembl:

ensembl_id ENSDARG00000100083

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000563 False 2557 mRNA 0.38 12 27977297 28020042
TCONS_00000564 False 1580 mRNA 0.41 13 27977331 28019225
TCONS_00000565 False 640 nonsense_mediated_decay 0.45 9 27977370 28001937
TCONS_00000566 False 633 lncRNA 0.41 6 27977389 27995053
TCONS_00000567 True 668 processed_transcript 0.38 7 27984393 27995611

Neighbor

gene id symbol gene type direction distance location
XLOC_000331 dnajb14 coding upstream 82480 27867706 ~ 27894817 (+)
XLOC_000330 pspc1 coding upstream 116149 27808916 ~ 27861148 (+)
XLOC_000329 si:dkey-29d5.1 coding upstream 244118 27713349 ~ 27733179 (+)
XLOC_000328 bnc2 coding upstream 764838 27023687 ~ 27212459 (+)
XLOC_000327 NA coding upstream 1236148 26740115 ~ 26741149 (+)
XLOC_000333 chst10 coding downstream 11655 28031697 ~ 28047242 (+)
XLOC_000334 psip1a coding downstream 69661 28089703 ~ 28195267 (+)
XLOC_000335 NA coding downstream 452157 28472199 ~ 28473413 (+)
XLOC_000336 CU469541.1 coding downstream 883728 28903770 ~ 28904635 (+)
XLOC_000337 cbsa coding downstream 1048607 29068649 ~ 29093562 (+)
XLOC_000325 NA non-coding upstream 1306087 26664689 ~ 26671210 (+)
XLOC_000323 AL954695.3 non-coding upstream 1392704 26577288 ~ 26584593 (+)
XLOC_000322 AL954695.2 non-coding upstream 1422458 26551034 ~ 26554839 (+)
XLOC_000308 NA non-coding upstream 2255595 25719653 ~ 25721702 (+)
XLOC_000340 BX908780.5 non-coding downstream 1154153 29174195 ~ 29180648 (+)
XLOC_000346 BX908780.2 non-coding downstream 1291485 29311527 ~ 29312559 (+)
XLOC_000347 CT573186.1 non-coding downstream 1424410 29444452 ~ 29445719 (+)

Expression


Co-expression Network