LOC110485609 (LOC106591329)


Basic Information

Item Value
gene id LOC110485609
gene name LOC106591329
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 15777687 ~ 15797879 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949087.1
aacaattgTTGACCATTTAGGCTTTGCACTGTCTCTTTATTCTGACCCGGAAGTACTTAGTTATTCTTTCCTGCTTCACAGTGGTACCTTGTAGCGCTTTGAAGGTGAAGCTCAATCGCCTGTCTCACCGCTGCAGCCTACCGGTGAGGTACTGAACAAGAACGACTCTCTCCTGCTCTGTACCGGGATCCGTTATAATCATGTCTATATTCGCCGAAGTACCTCAAGCCCCTCCAGTGGCCGTTTTTAAACTGACTGCCGATTTCAGAGAGGACACTAACGCGCAGAAGGTGAATTTGGGAGTCGGAGcctacCGTACAGATGACTGTCTACCGTGGGTCCTGCCCGTAGTGAAGAAGGTAGAGCAGATGATAGTGGAGGACAACAGTCTGAACCACGAGTATCTTCCCATCCTGGGTCTCCCTGAGCTCCGCTCTGCTGCCTCCAAGGTGGCCCTGGGCGATGACAGCCCCGCCATCAAGGACGGGAGGgtGGGAGCTGTCCAGGCGTTGGGAGGTACCGGTGCGTTGAGGATCGGGGCGGAGTTTCTGAGGCGCTGGTACAACGGCACCAACAACACGGCCACGCCCGTCTACGTCTCCGCGCCAACCTGGGAGAACCACAATGCAGTGTTTTCTGATGCTGGGTTTAAAGATATCCGCCCCTACCACTACTGGGACGGAGAAAAGAAAGGCCTGGACGTGACCGGTATAATGGATGAcctggagAACGCTCCAGAACATTCTATCTTTGTGCTCCATGCCTGTGCCCACAACCCCACGGGGACAGACCCCACACCTGACGAATGGAAGACGATCTCTGAGGTCATGAAgagGAGGAAGCTGTTTGTGTTCTTTGACTCAGCCTACCAGGGTTTTGCATCAGGCAGTCTGGATAAAGATGCCTGGGCCATCCGCTACTTTGTCTCTGAAGGATTTGAGCTGCTCTGTGCCCAGTCCTTCTCCAAGAACTTTGGCCTCTACAATGAGCGTGTTGGTAACCTGACGGTAGTGGCCCAGGATAAAGACAACCTGGCCCGTGTTCTGTCCCAGATGGAGAAGATCGTCAGGACCACCTGGTCCAACCCTCCCTCCCAGGGAGCGCGCATCGTAGCCATCACACTCAACAACCCTGATCTGTTCATAGAATGgaaGGGTAATGTAAAGACCATGGCTGACCGTGTATTGTTGATGAGAGACCAGTTGAAGGCTAAGCTAATTGCTCTGGGGACGCCTGGCACCTGGGACCACATCACTCAGCAGATCGGCATGTTCAGCTTCACAGGACTGAACCCTAAGCAGGTGCAGTACATGATTAAGGAGAAGCATGTCTACCTGATGGCCAGCGGTCGTATCAACATGTGTGGCCTCACCTCCAAGAACATCGACTATGTCGCAGAGTCCATCCATGAGACAGTGTCCAAGGTCCAATAAGGCCCCGCCCTCCGCATCCAGCTGCTTCCTGTCCACCACAGGAAGTACTGTTAATTGTCACGTGTGGTCTCGTCAAGCACCCCATTCTGTGACAACACACCCTTTCTCTATAAGCAGTGCTCTAACCGTCTATTGGTTGTCAAATTTAGAAGAGTGATGATATGACACGTGTTCACGGCAATCAATGTTAATGATCAACAGTATAACTGGTTTCTGtccatcttctctcctcctcagatTACTGAGACATCTTTAAACAATCTGAGCGCAGACCTCTAGTCGAAGTATTTCACTCTTCTGGCGATCGTTCTGttgccttttatttattttattgtgcCATTTCCGGTTTTGAAAATGTAGAAAAGATGACTGTGTGCACTttggttttaaaaaaatgtttcagAGCACTTGAAAGTGAAGCATTGCCAGAAGTTGAGTGAAAAGTTTGTGTAAAATGAATTCTACATATGAGCCCCCAGACCTCCTATCTACAGACGACCACAATGCTTCTGAACGTCTTTTATAATAGAACTGGTTCCATTTAACAATCGCAACATTCTAGAACGTGTGAAATGGTGCATTGTGGATCAAATGCTCTGTGATGTCATGTGACAGGCTTGAAAGGTTCTTTACAGTTCATGCATGTGCCGCCTATAGGTCAAACGTTAACAGGAAATGCCCTCTGATAGGGTGATATGACCTTTTCTCAACCTTTGAGCAGCTATATGCAGATATGTCCTATAGGAAAAGCACATACCACTACTGTGGTAATAGTTGAACCACTTAAATGTCTGTGGCTTAGGTTCCGTGTTCGGCATGTACTTGGTGTTAAAAGACTCGTATTCATCATAATGCTGCTTATGAAGGAGTGTTATAACCTCTGCCTTTAACAGTGATGTGTTTGTTTTCATGTTTTGTTCACTGTACACATAcagttggtcttccaacacacagCCTCACGCCGTTATATTGCCATGGTTATATTGACATCCTGTCTGTACATTTCAGACAGCTAATAAAAAATGATGAATCGTGTGCTAAACTGAA

Function

NR:

description
aspartate aminotransferase, cytoplasmic-like

GO: NA

KEGG:

id description
K14454 GOT1; aspartate aminotransferase, cytoplasmic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949087.1 True 2480 mRNA 0.48 9 15777687 15797879

Neighbor

gene id symbol gene type direction distance location
LOC110487262 hoga1 coding downstream 17493 15744215 ~ 15760194 (-)
LOC110485613 LOC106591333 coding downstream 73422 15627128 ~ 15704265 (-)
LOC118940331 NA coding downstream 152144 15614864 ~ 15626817 (-)
LOC118936458 LOC106591490 coding downstream 309431 15444480 ~ 15468256 (-)
LOC118940327 NA coding downstream 402570 15373361 ~ 15375117 (-)
LOC110487244 LOC105012087 coding upstream 52795 15850674 ~ 15871731 (-)
LOC110518551 LOC106591223 coding upstream 101007 15898886 ~ 15917523 (-)
LOC110485584 va0e2 coding upstream 138833 15936074 ~ 15938556 (-)
LOC118940334 p40phox coding upstream 483518 16281397 ~ 16330030 (-)
LOC110515368 LOC105012189 coding upstream 561467 16359346 ~ 16373440 (-)
G1423821 NA non-coding downstream 1706 15764275 ~ 15775981 (-)
G1423783 NA non-coding downstream 36143 15740782 ~ 15741544 (-)
G1423805 NA non-coding downstream 38011 15739291 ~ 15739676 (-)
G1423803 NA non-coding downstream 46247 15731041 ~ 15731440 (-)
G1423786 NA non-coding downstream 83135 15694139 ~ 15694552 (-)
G1423834 NA non-coding upstream 6466 15804345 ~ 15804568 (-)
G1423844 LOC106591187 non-coding upstream 37695 15835574 ~ 15838677 (-)
G1423845 NA non-coding upstream 42418 15840297 ~ 15840845 (-)
G1423856 NA non-coding upstream 74347 15872226 ~ 15874049 (-)
G1423112 NA other downstream 193594 15583695 ~ 15584093 (-)
G1422920 LOC106591235 other downstream 364090 15397290 ~ 15413597 (-)
G1422918 NA other downstream 372513 15383119 ~ 15405174 (-)
G1422897 NA other downstream 442796 15333878 ~ 15334891 (-)
LOC118940320 LOC106605908 other downstream 530345 15003526 ~ 15247342 (-)
G1423836 NA other upstream 10807 15808686 ~ 15831010 (-)
G1423891 NA other upstream 187394 15985273 ~ 15986842 (-)
G1424040 NA other upstream 571878 16369757 ~ 16370443 (-)
G1424051 cbx6 other upstream 608852 16406731 ~ 16410128 (-)
G1424038 LOC106591467 other upstream 614179 16412058 ~ 16418005 (-)

Expression


Co-expression Network