LOC110518551 (LOC106591223)


Basic Information

Item Value
gene id LOC110518551
gene name LOC106591223
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 15898886 ~ 15917523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948331.1
ATGAATGGGATGGAGCCTGCGTTTGGCGAGGCGTATGGGAGCCGTGGCTGTCTCCTCAGCCCCTACTCCCTGGCTGTCTCCCCTCTAGGGGGCAGGACCGAATATGACCAGaGCGTGCTCCTGATGCTGGGCTCTCCAGCGACGCCGCGGAAACGGCCCTTCGAGTTGCTAAGCGACCTGGTGGACGACGGGGGCTTCGGCGAGGAGCTGCACGTGGAGCGTTGGGACGTGTCGGCGCTGGATGACATCACGCGCTACACCAAGCTGGGCCTCGGGGGGGAGCTGGCGAGCACCGAGGACGCCGTGCTGATGGGCCGTTGGAGCGGGACccgggaggaagaggaggaggagaggaggaagaggaaggcacAGGCCATAGCTCAGCAGCAGACATCACATGTAACCACGATGATGGTAACGCATCTCCATGGAAACGGCATCACAATGACCCCCGACCCCTGTCTAGGCCACGCCCAGAGAGGCAGGGTGGTCAGAGAGCAGGTGGGACTTGATGTTACCATGGCGATGGAAAGGGTGACAGAAAAAGGAGGACAGGATGGGGGGATGAGGGTTCCTACGGTGGAGGTGTACCAggtggcagaggaggaggaggttgccGCAGCTGTGTTGGCAGCGGCGGAAGTCGTTGCCGCGGTGACGGAGACGTCTGGGATTCTTCCGGGGGGggaggaggaggagagggaagaacaAGAAGAggtattggaggaggaggaggaggaggaagaagaggaggaggaaggggaggacggAGCAGGGGATGAGACTGCGGTGGAAGCAGAATTGTCCAGCTCGTCAGAAACAGAATTTGAGGTGGAACCAGAGCGGGGGGGTGGTCCAGGGGAACGGCCCCAGAAGAGAAGGTGTTTCTGGGAGTACCGCCACGCTCACGCACGGGACTCTGGGAGACAGAAGAAGACTGGAGGGGAGGTCCGATGGTCCCTCTCCTGGAGCTCTAGCACCCTACCTAGTACCCTATACCGCAGAGAGGgAAAGAAAGGAAGGCGCAAAGCGAGGAAGACGGACGCCAGcgacctgacccctaaccctgtgAAGCTCACAAACATCGGCGAACAGCTGCAGAAACTCAACGCCACCATAGATGGGATGGGTCCTGTTAACGACCTGCCTGTTGTGGCCAGGGCACGCTCACGCAAAGAGAAGAACAAACTAGCTTCCagGGCCTGTCGGTTGAAGAAGAAAGCGCAACACGAAGCCAACAAGATCAAGCTGTGGGGACTCAACCAGGAGTACGagaaccTTTTGGGGGCGTTGCTGAGGATCAAGGAGGTGATTGGTCAGAGGGTGGAGCACAGCGGAGAGGAGGTGGACAAAGATGAACGAGGGATGACCCAGAGACTGGAGGACATACTGAAAGAGTCCAGtgGTCCTCTAGTGGCTGGACGGACCAAAGAGTTTGTCCAGAGGATCCTGGAGGTGAGTGGAGGGGGGCTGACCAAGGCTGGGGCCAAGGGCAAAGACACACAGACCCCCCCTGCACCGGGAGAGGAGACAGCTGCCTAATGTACCCCCCATCACCCCTGATCCCCCCCTGGACCAGGAGAGGGGACAGCTGCctaatgtacccccccccccatcaccccTGACCCACCCTGgaccaggagaggagacagctgcCTAATGGACTGGCCAACACCACCAgctcccctgccccaccctggaccaggagaggagacagctgcCTAATGGACTGGCCAACACCACCAgctcccctgccccaccctggaccaggagaggagacagctgcCTAATGGACTGGCCAACACCACCAGCTCCCCTGCGACACCCCTCGGACACAGCCATCCACTCCTACCGTCCCCCACTACACTCTGTCACCTGGAGAATAGGTGgatggagaaagggatggagaaagagagggaggagcagatgGAGGAGGTGGGGGAGACTGAGGTTTGAGTTCAAACCTCCTCTGTTTCAGCTCTGTTTCCTTCTGTCTCTTCAGTAGCGCTCTGTAACTTCTTACCTTCAGCTAATCACCAACACAGGCTAGCTgctgaccatgtgtgtgtgagtcagctgatctgtggctgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtagtatgaatgtgtgtggttGGTTTAATCTCTCCCTTCTTCAGTAAACTGTATTGGTATCCCATTGTGCCTATATGAATAGACATTGCACTGTTTGTAGATGATAGAGAAGTTGGCAAGGGGTTGGCATGAGGGTAGGGTAAGGAGAGAagttggaggggagggggggggggggtcatgttcagtaggccACAACGTTCCTTGCAAGGTTCAGAAAGAAATAGACTGTATGGAACAGACGTGCATCTCTGACATCTAGAGTAAGGAGTAATGTCTTCTCTATTCACAACATTGCTATCTGCAACGTTTAGCAGGCTTGGTTACACCCTCCTGGAATCAACCCTGCTAGTAAACATCAGTGGGATGAGCCTTTTTTGACCAGCGAGCGACATAATTGGTGCTTGCCACAGAGGGCATAAATGAGCACTTTGATTTGTAGCTGTATCCTGTCTATTCCCCTTTGAGAAATACCTGGGTCCTGTTCATCAGGCACTAAATGTAACAAAAATGACTGAAACAGGGAATATTACCTGGACTTCTCCAATAAGAAACGCAAATGTTTGTTTTCTCCATTGCAAAACATCTTAAAACGTTTTGTTaggtgccctaatgaacatgaccctgaaaATGCAAGTTCCTTCTCTCAGAACGACCAGAGAACAGAGGATGAACTGTGATCACACCAAACATCAAAGCAACTGTAGCAGCTAAGACTTGCGGAGCTTTCGTCACAGAGTTAGAAGAAAGAAAAATGTACTTTAAAAAAAGTAGCTATTAAATCCAACCGACCAAAGATGACACGAACAGCTGACATTTCAAAGAACTGAAATGAAAGCTGAAGTGATCGGCTGTTacccaaccctctccctcctactactgctgttacccaaccctctccctcctactactgctgttatccaaccctctccctcctactactgctgttatccaaccctctccctcctactactgctgttat

Function

NR:

description
uncharacterized protein LOC110517588, partial

GO: NA

KEGG:

id description
K21554 CREBRF, LRF; CREB3 regulatory factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948331.1 True 3102 mRNA 0.55 8 15898886 15917523

Neighbor

gene id symbol gene type direction distance location
LOC110487244 LOC105012087 coding downstream 27155 15850674 ~ 15871731 (-)
LOC110485609 LOC106591329 coding downstream 101007 15777687 ~ 15797879 (-)
LOC110487262 hoga1 coding downstream 138692 15744215 ~ 15760194 (-)
LOC110485613 LOC106591333 coding downstream 194621 15627128 ~ 15704265 (-)
LOC118940331 NA coding downstream 273343 15614864 ~ 15626817 (-)
LOC110485584 va0e2 coding upstream 19189 15936074 ~ 15938556 (-)
LOC118940334 p40phox coding upstream 363874 16281397 ~ 16330030 (-)
LOC110515368 LOC105012189 coding upstream 441823 16359346 ~ 16373440 (-)
LOC110512844 pla2g6 coding upstream 456202 16373725 ~ 16400027 (-)
LOC110512923 LOC106590932 coding upstream 554394 16471917 ~ 16544688 (-)
G1423812 NA non-coding downstream 6601 15891068 ~ 15892285 (-)
G1423864 NA non-coding downstream 11682 15885690 ~ 15887204 (-)
G1423856 NA non-coding downstream 24837 15872226 ~ 15874049 (-)
G1423845 NA non-coding downstream 58041 15840297 ~ 15840845 (-)
G1423809 NA non-coding upstream 1729 15919252 ~ 15935970 (-)
G1423871 NA non-coding upstream 4247 15921770 ~ 15922172 (-)
G1423876 NA non-coding upstream 30717 15948240 ~ 15948832 (-)
G1423877 NA non-coding upstream 35595 15953118 ~ 15953390 (-)
G1423836 NA other downstream 67876 15808686 ~ 15831010 (-)
G1423112 NA other downstream 314793 15583695 ~ 15584093 (-)
G1422920 LOC106591235 other downstream 485289 15397290 ~ 15413597 (-)
G1422918 NA other downstream 493712 15383119 ~ 15405174 (-)
G1422897 NA other downstream 563995 15333878 ~ 15334891 (-)
G1423891 NA other upstream 67750 15985273 ~ 15986842 (-)
G1424040 NA other upstream 452234 16369757 ~ 16370443 (-)
G1424051 cbx6 other upstream 489208 16406731 ~ 16410128 (-)
G1424038 LOC106591467 other upstream 494535 16412058 ~ 16418005 (-)
LOC110508387 LOC106599573 other upstream 737745 16564951 ~ 16674565 (-)

Expression


Co-expression Network