LOC110515368 (LOC105012189)


Basic Information

Item Value
gene id LOC110515368
gene name LOC105012189
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 16359346 ~ 16373440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949103.1
ACCTACCTACGTCCCTCCCTGTGGTGGTGGCTGAGTTGGAACAGGGCATGTTTCCATCCTTTCACTCTGATCCATCCATCTATAATTCAGCTGACCCGGCCGTATCGgtgtctctttctttccttccctctgtaAAATTGGCGTATGATGCAGGGATGAAGAGGCTGATTAACGAatgggagaaagagggagcgagagaaaggagCTATCACAACAGGTTGTTGTTGGTGGCAGAAAGAACAAGGGAACAACGAGGCAGAAGGAGGAGTGGGTTAATAGCCAAGCGGTTACTATGTCGGGGGCGAACAGTGATCAGTTACATAGGTCTACATTGTCTGTGTACGCGAACCTGATGGAACAGTTCAACCCAGGCCTACAGACGCTAGTTACATTAGGAAACAGCTATGTCAAGGCTttccaagcctTGGCTGTTACCAGTGAGGCCTACTTTAGTGCTGTAGCGAAGATGGGAGAACAGGCCCTTCACACACTCTCCTCTCGCTCActtgGAGATGTCCTGGTACAGATATCTGAGACGCAGAGAAGACTCACAGCTGAGATGGAGGGAGTGATTCgatggttccaggtagaagttTTACAGGCCATGGAGAAGAATGTCAAGTTGGATGAAGAGTACATTGACGGCAGTCGCAGGGTGTATGAGCTGGAGGTGAGGAACCAGGCAGAAGCTCTGGAGAGACAGCTGAGAAGAGGAGCCTTCAGAGActcactggaGCACAGTGAGTACATGCAGTACCTGAGACAGAGTCAACatgacattatgaaggaggaggagaggagGTATCGCTTCCTGGCAGAGAAACACTGCGGACTGACACAGTCACTGCTCTTCCTCATCAACaagaCAGGGGCTTCCCTACAGCAGAAGGCTGATGGATGGAAGGAGAAAGTGAACGAGACACGAGGCTCCAGACCCCGTAgccccacccaccctgaccaggaggaacagctgTGTGGCTCAGTGAGCTCTCTGCTGCAGACAGTAGATGAGGACAGAGACATGTCTTGGGCCAGGAGAGAACAGCAGGCCCTGGGGAGAGTGCCCTCTAGAGccCCGTCCCCCCTCCACAGCCGATCCCGCTCCTCCTCAGTGGGTGAGTCTCTGGGTCTGGGTGGGGGTAGGACCATGAGAGCCCTGGTGTCCCACCCACCCTCCTCCAACCCCAAACTGCTACCCTTCACCCGGGGAGAGATGGTCACCGTGTTGGTCCAGGAGCCGAGGAATGGGTGGCTGTATGGGAGAACGGAAAGCAGCCTACGCCAGGGCTGGTTCCCAGCAGCTTATGTTTCTTCTATTGAGGAGTTCTCTAACCTCTTGGGGTCCAGTGGCACTTCCTTGAAGAGCCACAGCATGAACAACCTATTGGATCCCTCTGACACCTCCATGGGCCAATCAGAAAAGGCCTATGGTGATGTGGCGCCCCCTACCACACCCACTCGCAGGGCCTCCGTCGACTTCCGAccaatctctcccctccctgagAGGAGGGCGGAGCCAGAGATTGTGACGAGAACAAATAGCCTGAAAGGCTACAATGAGCTCCcgccccctcctcctccgcccCCGCCACCCCCTCACCCAACAACAATGTTCCGGAGGGGGTCAGCTGACTTTCGACCAATCCAGCCTACTTTCCCGGAGAGGACAGCAGAATCATTATCACCTCTTGGAGCTTCTGGAGAAAACCTACTCTTTcccagGGGAACCAATCCCTTTGCGACAGTGAAGCTTAAACCAACAACCACCAATGACAGATCAGCACCGAGGACCCACTGACCAATCAGCACAGAGATGTCGACGTCAAGAAAAGCTGATGTCCTTGAGTTTGACATTGAGTCTATTTTTAGAGAAATTAAGTAGATCATCTAAtcgtgtaaaaatatatatttatttatttgtactattatcCGATTTAAGAATAGCACTTTGTCACATTGTTTGTGTGTTTCGATAGATTTTCCAATGGTTTACTAATGGTTCGATCTAGGATGCTTTTATTGTGAAATAGATACTTTAATTTTGAAAATATCTAAATGAATCGTCTCAT
>XM_036949104.1
CTACCTACCTACGTCCCTCCCTGTGGTGGTGGCTGAGTTGGAACAGGGCATGTTTCCATCCTTTCACTCTGATCCATCCATCTATAATTCAGCTGACCCGGCCGTATCGgtgtctctttctttccttccctctgtaAAATTGGCGTATGATGCAGGGATGAAGAGGCTGATTAACGAatgggagaaagagggagcgagagaaaggagCTATCACAACAGGTTGTTGTTGGTGGCAGAAAGAACAAGGGAACAACGAGGCAGAAGGAGGAGTGGGTTAATAGCCAAGGTGACTTTCACTATCAAAAGAAAAGAAGCCTGTAACTGAATACGCTGATTAGTACCTAGCTAGCCTACTACCAACtaaattgttttatttcttaACTTTCAACTAGTACTCTGGAGTGTAAAGAGAATAGTTTATTCATGTATGTAAAATCCTAATTATTCCGTTTTTGTTTTGTGGAAATCGAAGCGGTTACTATGTCGGGGGCGAACAGTGATCAGTTACATAGGTCTACATTGTCTGTGTACGCGAACCTGATGGAACAGTTCAACCCAGGCCTACAGACGCTAGTTACATTAGGAAACAGCTATGTCAAGGCTttccaagcctTGGCTGTTACCAGTGAGGCCTACTTTAGTGCTGTAGCGAAGATGGGAGAACAGGCCCTTCACACACTCTCCTCTCGCTCActtgGAGATGTCCTGGTACAGATATCTGAGACGCAGAGAAGACTCACAGCTGAGATGGAGGGAGTGATTCgatggttccaggtagaagttTTACAGGCCATGGAGAAGAATGTCAAGTTGGATGAAGAGTACATTGACGGCAGTCGCAGGGTGTATGAGCTGGAGGTGAGGAACCAGGCAGAAGCTCTGGAGAGACAGCTGAGAAGAGGAGCCTTCAGAGActcactggaGCACAGTGAGTACATGCAGTACCTGAGACAGAGTCAACatgacattatgaaggaggaggagaggagGTATCGCTTCCTGGCAGAGAAACACTGCGGACTGACACAGTCACTGCTCTTCCTCATCAACaagaCAGGGGCTTCCCTACAGCAGAAGGCTGATGGATGGAAGGAGAAAGTGAACGAGACACGAGGCTCCAGACCCCGTAgccccacccaccctgaccaggaggaacagctgTGTGGCTCAGTGAGCTCTCTGCTGCAGACAGTAGATGAGGACAGAGACATGTCTTGGGCCAGGAGAGAACAGCAGGCCCTGGGGAGAGTGCCCTCTAGAGccCCGTCCCCCCTCCACAGCCGATCCCGCTCCTCCTCAGTGGGTGAGTCTCTGGGTCTGGGTGGGGGTAGGACCATGAGAGCCCTGGTGTCCCACCCACCCTCCTCCAACCCCAAACTGCTACCCTTCACCCGGGGAGAGATGGTCACCGTGTTGGTCCAGGAGCCGAGGAATGGGTGGCTGTATGGGAGAACGGAAAGCAGCCTACGCCAGGGCTGGTTCCCAGCAGCTTATGTTTCTTCTATTGAGGAGTTCTCTAACCTCTTGGGGTCCAGTGGCACTTCCTTGAAGAGCCACAGCATGAACAACCTATTGGATCCCTCTGACACCTCCATGGGCCAATCAGAAAAGGCCTATGGTGATGTGGCGCCCCCTACCACACCCACTCGCAGGGCCTCCGTCGACTTCCGAccaatctctcccctccctgagAGGAGGGCGGAGCCAGAGATTGTGACGAGAACAAATAGCCTGAAAGGCTACAATGAGCTCCcgccccctcctcctccgcccCCGCCACCCCCTCACCCAACAACAATGTTCCGGAGGGGGTCAGCTGACTTTCGACCAATCCAGCCTACTTTCCCGGAGAGGACAGCAGAATCATTATCACCTCTTGGAGCTTCTGGAGAAAACCTACTCTTTcccagGGGAACCAATCCCTTTGCGACAGTGAAGCTTAAACCAACAACCACCAATGACAGATCAGCACCGAGGACCCACTGACCAATCAGCACAGAGATGTCGACGTCAAGAAAAGCTGATGTCCTTGAGTTTGACATTGAGTCTATTTTTAGAGAAATTAAGTAGATCATCTAAtcgtgtaaaaatatatatttatttatttgtactattatcCGATTTAAGAATAGCACTTTGTCACATTGTTTGTGTGTTTCGATAGATTTTCCAATGGTTTACTAATGGTTCGATCTAGGATGCTTTTATTGTGAAATAGATACTTTAATTTTGAAAATATCTAAATGAATCGTCTCAT
>TU1630242
GTGATCAGTTACATAGGTCTACATTGTCTGTGTACGCGGTAAGTAAATATTTTATGGTAGGCTAATACTATGGGGTTAGATTATTGAAATGTTGTAAATAGAGTATTGGCAGTAATCTACCCCCATCTTCCACCCTCCAATAATACTCTAAATGTGGGTGTATTGGGGGAAAAATGTACAAAACTTTTCAAAAAACATTTTACAGGGTGGTTCGAGcactgaattctgattggctgacagccgttgtATATCAGTCCATATACCAGGATATGACAACTTTTATttctactgctctaattatgttagtaaccagtttataatagcagtaaggcaccttggtgtttgtgagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgtgacaaataaaaatttgatttgtgatacagtgggctccaaaattactggcacccctgactggcaatgcacaaacaatgct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949103.1 False 2069 mRNA 0.51 15 16359346 16373438
XM_036949104.1 False 2257 mRNA 0.50 14 16359346 16373440
TU1630242 True 474 lncRNA 0.38 1 16372471 16372944

Neighbor

gene id symbol gene type direction distance location
LOC118940334 p40phox coding downstream 29316 16281397 ~ 16330030 (-)
LOC110485584 va0e2 coding downstream 420794 15936074 ~ 15938556 (-)
LOC110518551 LOC106591223 coding downstream 441823 15898886 ~ 15917523 (-)
LOC110487244 LOC105012087 coding downstream 487615 15850674 ~ 15871731 (-)
LOC110485609 LOC106591329 coding downstream 561467 15777687 ~ 15797879 (-)
LOC110512844 pla2g6 coding upstream 285 16373725 ~ 16400027 (-)
LOC110512923 LOC106590932 coding upstream 98477 16471917 ~ 16544688 (-)
LOC118940336 LOC106590989 coding upstream 119349 16492789 ~ 16523216 (-)
LOC118940337 NA coding upstream 138421 16511861 ~ 16519036 (-)
LOC110494901 NA coding upstream 153068 16526508 ~ 16536613 (-)
G1424029 NA non-coding downstream 33868 16324736 ~ 16325478 (-)
G1424010 NA non-coding downstream 107873 16249927 ~ 16251473 (-)
G1424008 NA non-coding downstream 113763 16245369 ~ 16245583 (-)
G1424007 NA non-coding downstream 117334 16241697 ~ 16242012 (-)
G1423969 NA non-coding downstream 121361 16177888 ~ 16237985 (-)
G1424045 NA non-coding upstream 22952 16396392 ~ 16396874 (-)
G1424052 NA non-coding upstream 37681 16411121 ~ 16411713 (-)
G1424038 LOC106591467 non-coding upstream 44202 16412058 ~ 16418005 (-)
G1424056 LOC106591467 non-coding upstream 47059 16420499 ~ 16422664 (-)
G1424063 NA non-coding upstream 72862 16446302 ~ 16447200 (-)
G1423891 NA other downstream 372504 15985273 ~ 15986842 (-)
G1423836 NA other downstream 528336 15808686 ~ 15831010 (-)
G1423112 NA other downstream 775253 15583695 ~ 15584093 (-)
G1422920 LOC106591235 other downstream 945749 15397290 ~ 15413597 (-)
G1422918 NA other downstream 954172 15383119 ~ 15405174 (-)
G1424051 cbx6 other upstream 33291 16406731 ~ 16410128 (-)
LOC110508387 LOC106599573 other upstream 281828 16564951 ~ 16674565 (-)
G1424234 NA other upstream 396997 16770437 ~ 16772957 (-)
G1424227 NA other upstream 477311 16850751 ~ 16851486 (-)
G1424039 NA non-coding downstream 11316 16360449 ~ 16361155 (-)
G1424040 NA other downstream 2028 16369757 ~ 16370443 (-)

Expression


Co-expression Network