LOC110512923 (LOC106590932)


Basic Information

Item Value
gene id LOC110512923
gene name LOC106590932
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 16471917 ~ 16544688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949133.1
AAGCACAGAtgcacttggccaaatcaatAACAGTAGTTAATGAAACAATTATAAATGTACACTGACACGCCGCGACCCACCATTAACAGGTCCGGGTCGCGACCCATACTGTAAACAAGGCGGCCCTAAAGTGTAATGGCTTTATTCAATAGTCCAGTTGGGGGCGATAATGAAAAATATTGGTTGACACACCAATAAAGTCAACTGAAGAAGAAAAAGCAGAACAATTTCGTCTTTACAAATATTTTCCTGTATGTGAGATAATTTACTTGTTCTCTGTAATATCGTATAGATTTGGAATCGTGACATTATCTACGGTGGAGGAAAATATGCAGGTTTCTCGACTCATACCCTGACTATGAGAAGGGATTGTGAGTGACGATTCGTTTGGGAACCTTGTGACCCAGCATGACACCGTGAACAAGATTGGTCGACCGTCTTGCTGGATCCGAAGCAAGAGACATTGTCGCCATGTTTTGTGTTTCGTTAAGGACTGAGTGCCCTTCCTGCGGAAGGAAATGTCGACTCCCGGAACACTTAAAACAAAGTAACTGTACTACTGTAGCCAACACACTTATAAAATTAGACAAGCGAAGAAATGCATAGTTTCAACTATGGATCCGGACAAAGCTATTCCGTTCCATTCTACACTCCTGGAGTCCCCAGGTCAAACGTCTCCCGGGACTGCTTTACTGCTGGGTCTGGTTGACTGCAGGAAAACACCGGGGCAGAATGGAactgagagaggagaagagaaggaagatGGAGATTTGATTTCATTAAGTAAGAACCATGCAGACAGCCCTAACCGTTGCTCTCTCAATGGGAGGGGCTTAtcatctggggagcctcaacaacaacatgatgctgacaagaaagagaagagtctctccagatcagaacatcTCAGTAAACACCAGCAGAGACGTATAGGGAAGAAACCTCACCACTGCtgttctgactgtgggaagagttttgccaAACAGACAGAATTGATAATTCACCAGCGGATTCACACTGGGGAGagaccttatagctgtgatcagtgtgggaagagattCAATCAATCAGGACACCTGACTAcacaccaacgcatacacacaggagagaagccttatagctgtgattgGTGTGGGAAGGGCTTCAATCAATCAGGAGCACTGACTAcacaccaacgcatacacacaggagagaagccttatagctgttatcattgtgggaagagcttcaggaTGTCAGGAGATCTGACTGCACACcagcacatacacacagtacagaagccttatagctgtgatcagtgtgggaagaacTTCAATCGTTCAGGACAACTGACTACACACCagcgcatacacacaggagagaggcctTATGGCTGTgttcagtgtgggaagagcttcaatcgTTCAGGACACCTGACTACACACCagcgtatacacacaggagagaagccttatagctgtgatcagtgtgggaagagcttcaatcatTCAGGATCCCTAGTTACACACCagcgcatacacacaggagagaagccttatagctgcgatcagtgtgggaagagcttcattCTTTCAGGATCCCTAATTACACACCagcgtatacacacaggagagaggccttatggctgtgatcagtgtgggaaaagcttcaatcATTCAGGACACCTGACTAcacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaagagctttaaTCATTCAGGAACCCTGAGCGAAcaccaacgcacacacacaggagaaaagccttatagctgtgatcagtgtgggaagagcttcaatcaaTCAGGACACCTGACTATACACCAACGcttacacacaggagagaagccttacagctgtgatcagtgtgggaagagcttcaatcaaTCAGGAGACCTAACTGCACACCAGCGCATACACACAGGCGAGAagccttacagctgtgatcagtgtgggaagagcttcaatcgTTCAGGAAACCTGACTGCACACCagcgcatacacacaggagagaagccttatagctgtgatcagtgtgggaagagtttcaatCATTCAGGAGCCCTGATTACACACCagcgcatacacacaggagagaagccatatagctgtgatcagtgtgggaagagcttcaatcgTTCAGGATACCTGACTATACACCAGCGCATACACACGGGCGAGAAGCCTTATaactgtgatcagtgtgggaagagcttcaggaATTTAGGACACCTGACTATACACCagcgcatacacacaggagagaagccttatagctgtgatcaatgtggaaagagttttgctCGAGATTTCACCCTGACCAAACACCatctcacacacactggagagaaaccttatagctgtgatcagtgtgggaagagtttcaggaCGTCAGAACACCTGACTAaacaccaacgcatacacacaggagagaaaccttatagctgtgatcagtgtgagaAGAGTTTTTCTCAAGATTCCAGCCTGACTACACACCagctcacacacactggagagaaaccttactcctgtctatgtggaaagagctttgctTATTCAGGGTCATTGAAAAAACACCAGAAAGCTCAAACATGTTTTctttcatctccctcctctctggcaCCGATTCCAGATCCCTAAAAGTTGAATAGAAAACATCTTGTGAAGAGTCATCCAACTCCCATTCTCTAACTGTTTAAGTCAGTTATGGTAACGTGTAGATAATGTGGATAATATGCAGCTCTGGATCCATATGTGTCAAGCGTCTCGGAGTAGGAGTGCCGTGTGTGTCTGGTGGGGTGGGGTTGTTCAGAGCTGTATCTTATTTAATTAATTCCTATTATCCATTAAATAACTTTTATGTAGAATAATATTTCAACAATACCAGGTGTGTATTCATGTATTCAAAAGATTAATAATTAAATCCATTATCTGATCTATCTGGGGGAAATGTTGTCTGAAGAGAAATTGTTCATCTTGTCTTATACAATCATTGGTTCCTGTAGATGCTGGGTAGATATGTGAGGGGGGAGATGGTCAAGGACCCTCAGACCTTTTGGCAGAATGACCAGAAGAGGTTGTATAAGTTAAGATAGATGACGCCAGTCACATGCAGGAACCAAATGTTAATGATGAATTCATGATGAATAATGTAAATCATgtaaatataacttgtctgtgtaagcagtatataagagaactaacgggactgccccgAAAGAGCTCCTGACCGATGTGTACTCTGGTGCATTATGTTTGTTGCAATCTCTCCAGCTTGCTGATAAAAAATAATTATTCATTAAAGTT
>TU1630312
ataaGGAAGATGGAGATTTGATTTCATTTAGAACCATGGTGTGTAGATTAGACTACAGTCTGCTTCTGAAACGATAGCGGAGGTGCATAAAGATGGCGGCCTGCATTACTTACCACAAATTACTCCTTTTGCTGAGTTCGCTGTATTCTACTTTGCTGTCCTTTACTGTTGGTATGGTCATTAGCACAGTAAACATGATCCTAATTTTAGCTTCAAGATGTCGGCAATTTGAAAAACCAAAAAAGTAAATTGTTCAATGTTCCAATCAATCAACACAATGTTGCGCACCATTGTTTCAGAACTCAGTGTATAGTGCTAAAACAATGACGTCATATCAGAATTCTGCCATCTCTATGAACTTTAGTCATTAATTTAATAATTATATATTGATGAAAATATCGGTCATTCCACCGATTTTTAAGTGTACCTTGGTCCAAAAATA
>TU1630313
GAAGAAGAAAAAGCAGAACAATTTCGTCTTTACAAATATTTTCCTGTATGTGAGATAATTTACTTGTTCTCTGTAATATCGTATAGATTTGGAATCGTGACATTATCTACGGTGGAGGAAAATATGCAGGTTTCTCGACTCATACCCTGACTATGAGAAGGGATTGTGAGTGACGATTCGTTTGGGAACCTTGTGACCCAGCATGACACCGTGAACAAGATTGGTCGACCGTCTTGCTGGATCCGAAGCAAGAGACATTGTCGCCATGTTTTGTGTTTCGTTAAGGACTGAGTGCCCTTCCTGCGGAAGGAAATGTCGACTCCCGGAACACTTAAAACAAAGTAACTGTACTACTGTAGCCAACACACTTATAAAATTAGACAAGCGAAGAAATGCATAGTTTCAACTATGGATCCGGACAAAGCTATTCCGTTCCATTCTACACTCCTGGAGTCCCCAGGTCAAACGTCTCCCGGGACTGCTTTACTGCTGGGTCTGGTTGACTGCAGGAAAACACCGGGGCAGAATGGAactgagagaggagaagagaaggaagatGGAGATTTGATTTCATTAAGTAAGAACCATGGTGTGTAGATTAGACTACAGTCTGCTTCTGAAACAATAGCGGAGGTGCATAAAGATGGCGGCCTGCATTACTTACCACAAATTACtcattttgctgagtttactgtATTCTACTTTGCTGTCCTTTACTGTTGGTATGGTCATTAGCACAGTAAACATGATCCTAATTTTAGCTTCAAGATGTCGGCAATTTGAAAAACCAAAAAAGTAAATTGTTCAATGTTCCAATCAATCAACACAATGTTGCGCACCATTGTTTCAGAACTCAGTGTATAGTGCTAAAACAATGACGTCATATCAGAATTCTGCCATCTCTATGAACTTTAGTCATTAATTTAATAATTATATATTGATGAAAATATCGGTCATTCCACCGATTTTTAAGTGTACCTTGGTCCAAAAATA

Function

NR:

description
zinc finger protein 239-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949133.1 False 3326 mRNA 0.44 4 16471917 16480168
TU1630312 False 442 lncRNA 0.36 2 16476343 16544688
TU1630313 True 993 lncRNA 0.40 3 16476343 16479962

Neighbor

gene id symbol gene type direction distance location
LOC110512844 pla2g6 coding downstream 71890 16373725 ~ 16400027 (-)
LOC110515368 LOC105012189 coding downstream 98477 16359346 ~ 16373440 (-)
LOC118940334 p40phox coding downstream 141887 16281397 ~ 16330030 (-)
LOC110485584 va0e2 coding downstream 533365 15936074 ~ 15938556 (-)
LOC110518551 LOC106591223 coding downstream 554394 15898886 ~ 15917523 (-)
LOC118940336 LOC106590989 coding upstream 12621 16492789 ~ 16523216 (-)
LOC118940337 NA coding upstream 31693 16511861 ~ 16519036 (-)
LOC110494901 NA coding upstream 46340 16526508 ~ 16536613 (-)
LOC118940340 NA coding upstream 70875 16548237 ~ 16552794 (-)
LOC110508387 LOC106599573 coding upstream 84783 16564951 ~ 16674565 (-)
G1424072 NA non-coding downstream 8843 16462144 ~ 16463074 (-)
G1424063 NA non-coding downstream 24717 16446302 ~ 16447200 (-)
G1424056 LOC106591467 non-coding downstream 49253 16420499 ~ 16422664 (-)
G1424038 LOC106591467 non-coding downstream 53912 16412058 ~ 16418005 (-)
G1424052 NA non-coding downstream 60204 16411121 ~ 16411713 (-)
G1424129 NA non-coding upstream 93630 16573798 ~ 16575767 (-)
G1424143 NA non-coding upstream 127743 16607911 ~ 16631071 (-)
G1424097 NA non-coding upstream 183424 16663592 ~ 16664169 (-)
G1424051 cbx6 other downstream 61789 16406731 ~ 16410128 (-)
G1424040 NA other downstream 101474 16369757 ~ 16370443 (-)
G1423891 NA other downstream 485075 15985273 ~ 15986842 (-)
G1423836 NA other downstream 640907 15808686 ~ 15831010 (-)
G1424234 NA other upstream 290269 16770437 ~ 16772957 (-)
G1424227 NA other upstream 370583 16850751 ~ 16851486 (-)
G1424218 NA other upstream 375309 16855477 ~ 16938699 (-)
LOC110494935 LOC106590780 other upstream 483462 16939303 ~ 16968595 (-)
LOC110495074 LOC106564395 coding upstream 152623 16697311 ~ 16701828 (-)
LOC110494903 LOC106564394 coding upstream 161927 16706615 ~ 16711894 (-)
LOC110494948 LOC106564393 coding upstream 172408 16717096 ~ 16731389 (-)
G1424186 NA non-coding upstream 146660 16691348 ~ 16691617 (-)

Expression


Co-expression Network