LOC110495074 (LOC106564395)


Basic Information

Item Value
gene id LOC110495074
gene name LOC106564395
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 16697311 ~ 16701828 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949146.1
ATGAAAACATAATCGCCGTAGACTGTCATGTGACCAGCAAACACTGGGCTTGTACCGACATTGCAGCCGATTGACTGATCtgcaaatcaccttgcatcataaataacgatattattatttgtagatcagtcagtcagcatTTGCTTCACGGTTTTGATGCTCCCGAACACGGCTTTTACGAGAAACAGAAAGTTGACCGAACTAAGGTTGTTGTTACGGTAGAAACGACGCTGTTACCCAGCGCccacctccatcattctgaacTCTTTTGACTGAACACCGTTTTGAACCCACGTTCTTGCTGCATGCTGCTTGCACGGTTTCTACGAAGGATGTCATCATCTCTTCCCCGACCTCGTCATGTGATCTGGgagacagaggagctggtggccTACCTCCACCCCCAGCCCTGGACCCCAGGCACTACCATCCTGGAGCCAAAGACCCCCAGGGGCCCAGATGAGGAACCAAGCCCAGCTCAGGGCAGTCTCTTCAGGCTGGGTGAGGGAGCCTACCTGAGGTTGCTGCTGGGGGCCAGGGAGGTGGGGGCCCTGCTGTGTGAGAGGCTGGGGGTGAAGAGATGTGCCCTGGTCTGCAGGCCCCACCCAGACAGTAACAGTCCACCCCAGATCCGGGTGCTGCCGCTACACGGCCTTGACAGCGAGTGGCACCCCCACCTGGCGGGAGATGAGCACTACACCCACCACGACCCCGGCTACGTCACCTCTAAAAGCGGCCCTCGCTGGACTGACACGTCCCTCCAGGAGATCCAGGCCGAGATTCGGGCCCAGCTCCCTTCCCCCAATGCCCTACCAAACCTCACCTTCCTGGGGGAAGACCCATCACACCCCGGCCTCTTCTCCCGGATCGTCCGTGGAGAGGAGCAGCAGTGGAGGGTGTGGGAGGATGAGGGACACGTGGCATTCCTCACCCCCTTCCCCAACGCCCCCGGCCTCACCGTACTGGTCCCCCGTCGACCTCTGACCTCGGATATATTTAGACTTGAAGAGGCAGATTATACGAGTTTGGTACTGGCAACCCAGAAGGTGGCCAAGGTTTTGGAAGAGGGTCTCGGAGCGTGGGGGGTGGGGTTGATATTCGAGGGGTTTGAGATTGACTATGCTCATGCTAAATTGATACCTCTGCTCTCTCCGCCCTCCTCTCACCAGGTTGATGGgggctccaccaccaccactggctCTCTACCTCCTCAGGCCCAGTTTAGTGCCACCTATCCTGGGTTTGTGACCTCGGAGGATGGCCCTGAGGCAAGCCTGGAGTGTTTGAAGGAGTTACAGGCCAAAATCACACAGTAaagataatgtactgtattgacATGTTATGAAATATGTATGTAATTGCATATTATGAAGGATCTGAAACTGGGTGATTATAGTATTGATGTATTGCACTTGACTACATACATTCCAATTGCATTATTGGTTGACTTGGTAATGTTTCAATACGAAGCCCGTTGATTCATGTACATACTGATTTGGTATACCAAATTCTGTAGATGTGACTGTTTCTGTCAATTTTATTATCAACTTGAAATAGGACCACAATCAAGAGCTTTATTTGATAAACATGGTACTGTAAGGGTTTTAAACATATCCTTTGAGAAGTACTTAACAGTAGCATGAAAAAATACATGATTGTTTGATCAAAATAAACATGTGATTTCTATTATG
>XM_036949145.1
TATGAAAACATAATCGCCGTAGACTGTCATGTGACCAGCAAACACTGGGCTTGTACCGACATTGCAGCCGATTGACTGATCtgcaaatcaccttgcatcataaataacgatattattatttgtagatcagtcagtcagcatTTGCTTCACGGTTTTGATGCTCCCGAACACGGCTTTTACGAGAAACAGAAAGTTGACCGAACTAAGGTTGTTGTTACGGTAGAAACGACGCTGTTACCCAGCGCccacctccatcattctgaacTCTTTTGACTGAACACCGTTTTGAACCCACGTTCTTGCTGCATGCTGCTTGCACGGTTTCTACGAAGGTACCGTAAGATGTCATCATCTCTTCCCCGACCTCGTCATGTGATCTGGgagacagaggagctggtggccTACCTCCACCCCCAGCCCTGGACCCCAGGCACTACCATCCTGGAGCCAAAGACCCCCAGGGGCCCAGATGAGGAACCAAGCCCAGCTCAGGGCAGTCTCTTCAGGCTGGGTGAGGGAGCCTACCTGAGGTTGCTGCTGGGGGCCAGGGAGGTGGGGGCCCTGCTGTGTGAGAGGCTGGGGGTGAAGAGATGTGCCCTGGTCTGCAGGCCCCACCCAGACAGTAACAGTCCACCCCAGATCCGGGTGCTGCCGCTACACGGCCTTGACAGCGAGTGGCACCCCCACCTGGCGGGAGATGAGCACTACACCCACCACGACCCCGGCTACGTCACCTCTAAAAGCGGCCCTCGCTGGACTGACACGTCCCTCCAGGAGATCCAGGCCGAGATTCGGGCCCAGCTCCCTTCCCCCAATGCCCTACCAAACCTCACCTTCCTGGGGGAAGACCCATCACACCCCGGCCTCTTCTCCCGGATCGTCCGTGGAGAGGAGCAGCAGTGGAGGGTGTGGGAGGATGAGGGACACGTGGCATTCCTCACCCCCTTCCCCAACGCCCCCGGCCTCACCGTACTGGTCCCCCGTCGACCTCTGACCTCGGATATATTTAGACTTGAAGAGGCAGATTATACGAGTTTGGTACTGGCAACCCAGAAGGTGGCCAAGGTTTTGGAAGAGGGTCTCGGAGCGTGGGGGGTGGGGTTGATATTCGAGGGGTTTGAGATTGACTATGCTCATGCTAAATTGATACCTCTGCTCTCTCCGCCCTCCTCTCACCAGGTTGATGGgggctccaccaccaccactggctCTCTACCTCCTCAGGCCCAGTTTAGTGCCACCTATCCTGGGTTTGTGACCTCGGAGGATGGCCCTGAGGCAAGCCTGGAGTGTTTGAAGGAGTTACAGGCCAAAATCACACAGTAaagataatgtactgtattgacATGTTATGAAATATGTATGTAATTGCATATTATGAAGGATCTGAAACTGGGTGATTATAGTATTGATGTATTGCACTTGACTACATACATTCCAATTGCATTATTGGTTGACTTGGTAATGTTTCAATACGAAGCCCGTTGATTCATGTACATACTGATTTGGTATACCAAATTCTGTAGATGTGACTGTTTCTGTCAATTTTATTATCAACTTGAAATAGGACCACAATCAAGAGCTTTATTTGATAAACATGGTACTGTAAGGGTTTTAAACATATCCTTTGAGAAGTACTTAACAGTAGCATGAAAAAATACATGATTGTTTGATCAAAATAAACATGTGATTTCTATTATG
>XM_036949147.1
TATGAAAACATAATCGCCGTAGACTGTCATGTGACCAGCAAACACTGGGCTTGTACCGACATTGCAGCCGATTGACTGATCtgcaaatcaccttgcatcataaataacgatattattatttgtagatcagtcagtcagcatTTGCTTCACGGTTTTGATGCTCCCGAACACGGCTTTTACGAGAAACAGAAAGTTGACCGAACTAAGGTTGTTGTTACGGTAGAAACGACGCTGTTACCCAGCGCccacctccatcattctgaacTCTTTTGACTGAACACCGTTTTGAACCCACGTTCTTGCTGCATGCTGCTTGCACGGTTTCTACGAAGACttcccatctttctgtctctctatttcccctctttctcctccttctcctgacctccctctcttcttccccctctgtCTTTTCCCTTCCTCCATCAGGATGTCATCATCTCTTCCCCGACCTCGTCATGTGATCTGGgagacagaggagctggtggccTACCTCCACCCCCAGCCCTGGACCCCAGGCACTACCATCCTGGAGCCAAAGACCCCCAGGGGCCCAGATGAGGAACCAAGCCCAGCTCAGGGCAGTCTCTTCAGGCTGGGTGAGGGAGCCTACCTGAGGTTGCTGCTGGGGGCCAGGGAGGTGGGGGCCCTGCTGTGTGAGAGGCTGGGGGTGAAGAGATGTGCCCTGGTCTGCAGGCCCCACCCAGACAGTAACAGTCCACCCCAGATCCGGGTGCTGCCGCTACACGGCCTTGACAGCGAGTGGCACCCCCACCTGGCGGGAGATGAGCACTACACCCACCACGACCCCGGCTACGTCACCTCTAAAAGCGGCCCTCGCTGGACTGACACGTCCCTCCAGGAGATCCAGGCCGAGATTCGGGCCCAGCTCCCTTCCCCCAATGCCCTACCAAACCTCACCTTCCTGGGGGAAGACCCATCACACCCCGGCCTCTTCTCCCGGATCGTCCGTGGAGAGGAGCAGCAGTGGAGGGTGTGGGAGGATGAGGGACACGTGGCATTCCTCACCCCCTTCCCCAACGCCCCCGGCCTCACCGTACTGGTCCCCCGTCGACCTCTGACCTCGGATATATTTAGACTTGAAGAGGCAGATTATACGAGTTTGGTACTGGCAACCCAGAAGGTGGCCAAGGTTTTGGAAGAGGGTCTCGGAGCGTGGGGGGTGGGGTTGATATTCGAGGGGTTTGAGATTGACTATGCTCATGCTAAATTGATACCTCTGCTCTCTCCGCCCTCCTCTCACCAGGTTGATGGgggctccaccaccaccactggctCTCTACCTCCTCAGGCCCAGTTTAGTGCCACCTATCCTGGGTTTGTGACCTCGGAGGATGGCCCTGAGGCAAGCCTGGAGTGTTTGAAGGAGTTACAGGCCAAAATCACACAGTAaagataatgtactgtattgacATGTTATGAAATATGTATGTAATTGCATATTATGAAGGATCTGAAACTGGGTGATTATAGTATTGATGTATTGCACTTGACTACATACATTCCAATTGCATTATTGGTTGACTTGGTAATGTTTCAATACGAAGCCCGTTGATTCATGTACATACTGATTTGGTATACCAAATTCTGTAGATGTGACTGTTTCTGTCAATTTTATTATCAACTTGAAATAGGACCACAATCAAGAGCTTTATTTGATAAACATGGTACTGTAAGGGTTTTAAACATATCCTTTGAGAAGTACTTAACAGTAGCATGAAAAAATACATGATTGTTTGATCAAAATAAACATGTGATTTCTATTATG
>XM_036949148.1
TATGAAAACATAATCGCCGTAGACTGTCATGTGACCAGCAAACACTGGGCTTGTACCGACATTGCAGCCGATTGACTGATCtgcaaatcaccttgcatcataaataacgatattattatttgtagatcagtcagtcagcatTTGCTTCACGGTTTTGATGCTCCCGAACACGGCTTTTACGAGAAACAGAAAGTTGACCGAACTAAGGTTGTTGTTACGGTAGAAACGACGCTGTTACCCAGCGCccacctccatcattctgaacTCTTTTGACTGAACACCGTTTTGAACCCACGTTCTTGCTGCATGCTGCTTGCACGGTTTCTACGAAGGTACCGTAAACttcccatctttctgtctctctatttcccctctttctcctccttctcctgacctccctctcttcttccccctctgtCTTTTCCCTTCCTCCATCAGGATGTCATCATCTCTTCCCCGACCTCGTCATGTGATCTGGgagacagaggagctggtggccTACCTCCACCCCCAGCCCTGGACCCCAGGCACTACCATCCTGGAGCCAAAGACCCCCAGGGGCCCAGATGAGGAACCAAGCCCAGCTCAGGGCAGTCTCTTCAGGCTGGGTGAGGGAGCCTACCTGAGGTTGCTGCTGGGGGCCAGGGAGGTGGGGGCCCTGCTGTGTGAGAGGCTGGGGGTGAAGAGATGTGCCCTGGTCTGCAGGCCCCACCCAGACAGTAACAGTCCACCCCAGATCCGGGTGCTGCCGCTACACGGCCTTGACAGCGAGTGGCACCCCCACCTGGCGGGAGATGAGCACTACACCCACCACGACCCCGGCTACGTCACCTCTAAAAGCGGCCCTCGCTGGACTGACACGTCCCTCCAGGAGATCCAGGCCGAGATTCGGGCCCAGCTCCCTTCCCCCAATGCCCTACCAAACCTCACCTTCCTGGGGGAAGACCCATCACACCCCGGCCTCTTCTCCCGGATCGTCCGTGGAGAGGAGCAGCAGTGGAGGGTGTGGGAGGATGAGGGACACGTGGCATTCCTCACCCCCTTCCCCAACGCCCCCGGCCTCACCGTACTGGTCCCCCGTCGACCTCTGACCTCGGATATATTTAGACTTGAAGAGGCAGATTATACGAGTTTGGTACTGGCAACCCAGAAGGTGGCCAAGGTTTTGGAAGAGGGTCTCGGAGCGTGGGGGGTGGGGTTGATATTCGAGGGGTTTGAGATTGACTATGCTCATGCTAAATTGATACCTCTGCTCTCTCCGCCCTCCTCTCACCAGGTTGATGGgggctccaccaccaccactggctCTCTACCTCCTCAGGCCCAGTTTAGTGCCACCTATCCTGGGTTTGTGACCTCGGAGGATGGCCCTGAGGCAAGCCTGGAGTGTTTGAAGGAGTTACAGGCCAAAATCACACAGTAaagataatgtactgtattgacATGTTATGAAATATGTATGTAATTGCATATTATGAAGGATCTGAAACTGGGTGATTATAGTATTGATGTATTGCACTTGACTACATACATTCCAATTGCATTATTGGTTGACTTGGTAATGTTTCAATACGAAGCCCGTTGATTCATGTACATACTGATTTGGTATACCAAATTCTGTAGATGTGACTGTTTCTGTCAATTTTATTATCAACTTGAAATAGGACCACAATCAAGAGCTTTATTTGATAAACATGGTACTGTAAGGGTTTTAAACATATCCTTTGAGAAGTACTTAACAGTAGCATGAAAAAATACATGATTGTTTGATCAAAATAAACATGTGATTTCTATTATG
>XM_036949149.1
TATGAAAACATAATCGCCGTAGACTGTCATGTGACCAGCAAACACTGGGCTTGTACCGACATTGCAGCCGATTGACTGATCtgcaaatcaccttgcatcataaataacgatattattatttgtagatcagtcagtcagcatTTGCTTCACGGTTTTGATGCTCCCGAACACGGCTTTTACGAGAAACAGAAAGTTGACCGAACTAAGGTTGTTGTTACGGTAGAAACGACGCTGTTACCCAGCGCccacctccatcattctgaacTCTTTTGACTGAACACCGTTTTGAACCCACGTTCTTGCTGCATGCTGCTTGCACGGTTTCTACGAAGGTACCGATGTCATCATCTCTTCCCCGACCTCGTCATGTGATCTGGgagacagaggagctggtggccTACCTCCACCCCCAGCCCTGGACCCCAGGCACTACCATCCTGGAGCCAAAGACCCCCAGGGGCCCAGATGAGGAACCAAGCCCAGCTCAGGGCAGTCTCTTCAGGCTGGGTGAGGGAGCCTACCTGAGGTTGCTGCTGGGGGCCAGGGAGGTGGGGGCCCTGCTGTGTGAGAGGCTGGGGGTGAAGAGATGTGCCCTGGTCTGCAGGCCCCACCCAGACAGTAACAGTCCACCCCAGATCCGGGTGCTGCCGCTACACGGCCTTGACAGCGAGTGGCACCCCCACCTGGCGGGAGATGAGCACTACACCCACCACGACCCCGGCTACGTCACCTCTAAAAGCGGCCCTCGCTGGACTGACACGTCCCTCCAGGAGATCCAGGCCGAGATTCGGGCCCAGCTCCCTTCCCCCAATGCCCTACCAAACCTCACCTTCCTGGGGGAAGACCCATCACACCCCGGCCTCTTCTCCCGGATCGTCCGTGGAGAGGAGCAGCAGTGGAGGGTGTGGGAGGATGAGGGACACGTGGCATTCCTCACCCCCTTCCCCAACGCCCCCGGCCTCACCGTACTGGTCCCCCGTCGACCTCTGACCTCGGATATATTTAGACTTGAAGAGGCAGATTATACGAGTTTGGTACTGGCAACCCAGAAGGTGGCCAAGGTTTTGGAAGAGGGTCTCGGAGCGTGGGGGGTGGGGTTGATATTCGAGGGGTTTGAGATTGACTATGCTCATGCTAAATTGATACCTCTGCTCTCTCCGCCCTCCTCTCACCAGGTTGATGGgggctccaccaccaccactggctCTCTACCTCCTCAGGCCCAGTTTAGTGCCACCTATCCTGGGTTTGTGACCTCGGAGGATGGCCCTGAGGCAAGCCTGGAGTGTTTGAAGGAGTTACAGGCCAAAATCACACAGTAaagataatgtactgtattgacATGTTATGAAATATGTATGTAATTGCATATTATGAAGGATCTGAAACTGGGTGATTATAGTATTGATGTATTGCACTTGACTACATACATTCCAATTGCATTATTGGTTGACTTGGTAATGTTTCAATACGAAGCCCGTTGATTCATGTACATACTGATTTGGTATACCAAATTCTGTAGATGTGACTGTTTCTGTCAATTTTATTATCAACTTGAAATAGGACCACAATCAAGAGCTTTATTTGATAAACATGGTACTGTAAGGGTTTTAAACATATCCTTTGAGAAGTACTTAACAGTAGCATGAAAAAATACATGATTGTTTGATCAAAATAAACATGTGATTTCTATTATG
>XM_036949144.1
ACCAGTGTTATGGTGTCATTCTACACTTCTAGAGAATTGGGGAGGAAGGACTTGAGGATGTCATCATCTCTTCCCCGACCTCGTCATGTGATCTGGgagacagaggagctggtggccTACCTCCACCCCCAGCCCTGGACCCCAGGCACTACCATCCTGGAGCCAAAGACCCCCAGGGGCCCAGATGAGGAACCAAGCCCAGCTCAGGGCAGTCTCTTCAGGCTGGGTGAGGGAGCCTACCTGAGGTTGCTGCTGGGGGCCAGGGAGGTGGGGGCCCTGCTGTGTGAGAGGCTGGGGGTGAAGAGATGTGCCCTGGTCTGCAGGCCCCACCCAGACAGTAACAGTCCACCCCAGATCCGGGTGCTGCCGCTACACGGCCTTGACAGCGAGTGGCACCCCCACCTGGCGGGAGATGAGCACTACACCCACCACGACCCCGGCTACGTCACCTCTAAAAGCGGCCCTCGCTGGACTGACACGTCCCTCCAGGAGATCCAGGCCGAGATTCGGGCCCAGCTCCCTTCCCCCAATGCCCTACCAAACCTCACCTTCCTGGGGGAAGACCCATCACACCCCGGCCTCTTCTCCCGGATCGTCCGTGGAGAGGAGCAGCAGTGGAGGGTGTGGGAGGATGAGGGACACGTGGCATTCCTCACCCCCTTCCCCAACGCCCCCGGCCTCACCGTACTGGTCCCCCGTCGACCTCTGACCTCGGATATATTTAGACTTGAAGAGGCAGATTATACGAGTTTGGTACTGGCAACCCAGAAGGTGGCCAAGGTTTTGGAAGAGGGTCTCGGAGCGTGGGGGGTGGGGTTGATATTCGAGGGGTTTGAGATTGACTATGCTCATGCTAAATTGATACCTCTGCTCTCTCCGCCCTCCTCTCACCAGGTTGATGGgggctccaccaccaccactggctCTCTACCTCCTCAGGCCCAGTTTAGTGCCACCTATCCTGGGTTTGTGACCTCGGAGGATGGCCCTGAGGCAAGCCTGGAGTGTTTGAAGGAGTTACAGGCCAAAATCACACAGTAaagataatgtactgtattgacATGTTATGAAATATGTATGTAATTGCATATTATGAAGGATCTGAAACTGGGTGATTATAGTATTGATGTATTGCACTTGACTACATACATTCCAATTGCATTATTGGTTGACTTGGTAATGTTTCAATACGAAGCCCGTTGATTCATGTACATACTGATTTGGTATACCAAATTCTGTAGATGTGACTGTTTCTGTCAATTTTATTATCAACTTGAAATAGGACCACAATCAAGAGCTTTATTTGATAAACATGGTACTGTAAGGGTTTTAAACATATCCTTTGAGAAGTACTTAACAGTAGCATGAAAAAATACATGATTGTTTGATCAAAATAAACATGTGATTTCTATTATG

Function

NR:

description
uncharacterized protein LOC110508389 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949146.1 False 1691 mRNA 0.51 4 16697311 16701394
XM_036949145.1 False 1701 mRNA 0.51 4 16697311 16701395
XM_036949147.1 False 1789 mRNA 0.51 4 16697311 16701395
XM_036949148.1 False 1798 mRNA 0.51 4 16697311 16701395
XM_036949149.1 False 1697 mRNA 0.51 4 16697311 16701395
XM_036949144.1 True 1416 mRNA 0.52 4 16697311 16701828

Neighbor

gene id symbol gene type direction distance location
LOC110508387 LOC106599573 coding downstream 22746 16564951 ~ 16674565 (-)
LOC118940340 NA coding downstream 144517 16548237 ~ 16552794 (-)
LOC110494901 NA coding downstream 160698 16526508 ~ 16536613 (-)
LOC118940337 NA coding downstream 178275 16511861 ~ 16519036 (-)
LOC118940336 LOC106590989 coding downstream 195216 16492789 ~ 16523216 (-)
LOC110494903 LOC106564394 coding upstream 4787 16706615 ~ 16711894 (-)
LOC110494948 LOC106564393 coding upstream 15268 16717096 ~ 16731389 (-)
LOC110494933 LOC106591120 coding upstream 34669 16736497 ~ 16741532 (-)
LOC110494924 LOC106592628 coding upstream 119403 16819145 ~ 16836715 (-)
LOC110495067 LOC106590617 coding upstream 158562 16860390 ~ 16933566 (-)
G1424188 NA non-coding downstream 499 16696585 ~ 16696812 (-)
G1424187 NA non-coding downstream 4148 16692877 ~ 16693163 (-)
G1424186 NA non-coding downstream 5694 16691348 ~ 16691617 (-)
G1424097 NA non-coding downstream 33142 16663592 ~ 16664169 (-)
G1424143 NA non-coding downstream 66240 16607911 ~ 16631071 (-)
G1424192 NA non-coding upstream 10931 16712759 ~ 16712978 (-)
G1424196 NA non-coding upstream 13875 16715703 ~ 16715909 (-)
G1424204 yo84 non-coding upstream 23288 16725116 ~ 16725651 (-)
G1424233 LOC106564390 non-coding upstream 59547 16761375 ~ 16762169 (-)
G1424234 NA non-coding upstream 68609 16770437 ~ 16772957 (-)
G1424038 LOC106591467 other downstream 282452 16412058 ~ 16418005 (-)
G1424051 cbx6 other downstream 287183 16406731 ~ 16410128 (-)
G1424040 NA other downstream 326868 16369757 ~ 16370443 (-)
G1423891 NA other downstream 710469 15985273 ~ 15986842 (-)
G1424227 NA other upstream 148923 16850751 ~ 16851486 (-)
G1424218 NA other upstream 153649 16855477 ~ 16938699 (-)
LOC110494935 LOC106590780 other upstream 261802 16939303 ~ 16968595 (-)
G1424547 NA other upstream 755101 17456929 ~ 17457504 (-)

Expression


Co-expression Network