LOC110494903 (LOC106564394)


Basic Information

Item Value
gene id LOC110494903
gene name LOC106564394
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 16706615 ~ 16711894 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570233.2
ATACGCTTGGGTGTGATGCGGGACTATAAATAATATTGTGACCTCGTTCGACCGTTGTTTCTCTGTGACATTCAACGTTATTTCGTAGCATTCCGAGCGCTCAGTTCTCCTTCGCAAAATGGCAGTTTAACGTGCAGCGGCTTATCCAGCAGCGGCAACAACCCGGCAGTGCAACGGTCAAGCACTGGCTTTTTTACGCAAAATGGCTTCTCTCAAACCAACCACCCTCAGCTCTGCTGTTGTCTACCACAGCACGATATCACCGTTCCCCCTAACGACGACAACGTCCGAAGACTCTCTGTTATCCCGTTATAGTACCCTGTTACTGTTGACAGCCACCAGAAGAAGCAGTCATGTCCCTGTTGACTTCCCAACTGGTCTTGGAGGACGTTGGGGCCCTGTTACTGGACAACTGGTTTCTGACGGCTGACCCCATGGGGCCCCGTCTGGACCAAGATGAAGAGGATgatctacccccctctctctcctccttctcttcttctctctctctctccaactcttctgcctcttccctctctccctcttctttgtttagtttgtctccttccccctcccatctctcgtCCTCCGACTCCCTGCCTCCATCCCCTCATCCCTCGTTCCTGGGGAGCAGCAAGGCCGGCTCCGGGGTAGAGGACCACCTGATGCCGTTGACTCCGTGGCTGGACTCTAGCGAGCTGCTCCATGCCCACATGGGAACAAACGTCTGCAGAGATACATTTTCGGGCATGGACTGGATGGCTGAGAAGATAGACCTGAGTGACTTTGACCTGGACTCTCTGATTGGCTCCTGTTGTTCCGACGCCCCGCCCAGTTCCCCCGAGGATCTCCTGGCCTCCCTGGAGACCCGAATGGACCTAGACCTGATGGACCCCTTCACCGCCCCAATCCCTGCCCCACACGAGGTGCTCTCCCTGGGCATCCCTCTGGCCGACCTCCCCTCCCTGGAGCTCCCTGAAGAAGAGGTAGGGGATGAGGTCAGAGGTCCTGTGGTGACGGTTCAGGATCAAGAGGTCATGGTGAAGTCTGAGCCACAGTCTCCAGCACCCCTCTCCATGGGGTATACACTCGAGCTGGGGAGCGAAGTGGACGTTGATGTCTTGGAAGTCAAGACCACCCACACTCCAACTACCATCATCTCTGAGCCCAGCAACAGCCTCCAGACCACCGCCCCTATCGtcctctccctcctgccctcaggTCACTTCGTGGTGGTCCTCTCCCCTAAAGAGGAGCCAACCATCCTCCCCACATCAACCCTCTCAGCCTCCAGTAGCTGTGATGACCAGTCTGATGACAGCGACTCCGGCATCGACTCTGTATCCGgctcccctcctcaccacccatctccctctccttctccctccatagCCGGGTCCTCCAGGACCAAACCTTACTCCAAACCTGAACCTGAGACTACATCCCCCACAACCCTCAGCGGCAAGGTCAAATCAGTATCCGGGGCACCCAAGGTCGTGGAGAAGAAGCTCAAGAAGATGGCGCAGAACAAGACGGCAGCGACACGTTACCGACAGAAGAAGAAGGGCGAACAGGAAGTGCTGAGTGCGGAGTGTTCCGAGCTGGAGCAGAGGAACCGTGAGCTGGCAGAGAAGGCTGACGGCATCAGCAGAGAGATCCAGTACCTCAGAGATCTGATGGAGGAGGTCCGCTCAGCGAAGAACAGGAAGAAGACCACTGTTAGTGTGGCGTAGTCAATGGAAATTATGGATAGAAGGGGAATGCATAGAATGAGATCCAGTACCTTGTGGAGGAGGGGCTACGTCCTGGTTGTCCACCCTTCTACCAAAGTGTACATTTGCATACTTGCAGTCTATGATGGGAAGTGTGCATTTGCATACTTTGGGAGAAGATTAGAGAATGGAGAAGGCAGTCTGGTAATGGCTAGAAAGATGATAGAAAAGTTGATGAGATTATTATCAGGGGGAGAAGATGCGGGACTGATTTTAGTCAGGCGGAGCATCAGTCATGCTGGTCTGTTCTGTATGAACCCTATTACAGTGTTACACTGGTATACATACAcattattaaacacacacacacaagtgttgTATGGTATTGTCTTGACTAGGCCATGGCTACTGCGTAGGTAGGAAAATGTAGAATTACGACAAAGACAAATTAGTATGGCCACACTTACCAAGATCCAACCCATAACCTTCCCCAAAAATACTCCAGTTTCaaagaccagttacaacaaccccccccccaactgtcACCCTACTGTTACTCTTACCCCACTCACCCCTTACCTTCCCCCTTTTTTCTCGTTACCCCACTACTCTTTGACATCCTCTATGCAGCTTTAGTCCAGAAAGGGGCCTCGCCCTGTGACAGGTTTTTAATTGTTACACTGAATTCCCTCTGTCacaatgttatgtttggtatgtaTATATCTTCACCTGAACTCTACTCTGGCTTCATCAGGGTTCTATTTAACGCTGGGTAGTAGGAAACCATCCATCTCCTAGACTGTCCTAGACCTAGTTGGCAACTCTAGTGTAGCTTTAAGCTACATGTTTGTTTGGCTTGTATAAATGCTTTGCTATTGTTTACTATTAAAGCTCCTTATTGAATCTCAA

Function

NR:

description
cyclic AMP-dependent transcription factor ATF-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570233.2 True 2621 mRNA 0.52 3 16706615 16711894

Neighbor

gene id symbol gene type direction distance location
LOC110495074 LOC106564395 coding downstream 4787 16697311 ~ 16701828 (-)
LOC110508387 LOC106599573 coding downstream 32050 16564951 ~ 16674565 (-)
LOC118940340 NA coding downstream 153821 16548237 ~ 16552794 (-)
LOC110494901 NA coding downstream 170002 16526508 ~ 16536613 (-)
LOC118940337 NA coding downstream 187579 16511861 ~ 16519036 (-)
LOC110494948 LOC106564393 coding upstream 5202 16717096 ~ 16731389 (-)
LOC110494933 LOC106591120 coding upstream 24603 16736497 ~ 16741532 (-)
LOC110494924 LOC106592628 coding upstream 109337 16819145 ~ 16836715 (-)
LOC110495067 LOC106590617 coding upstream 148496 16860390 ~ 16933566 (-)
LOC110494935 LOC106590780 coding upstream 227409 16939303 ~ 16968595 (-)
G1424188 NA non-coding downstream 9803 16696585 ~ 16696812 (-)
G1424187 NA non-coding downstream 13452 16692877 ~ 16693163 (-)
G1424186 NA non-coding downstream 14998 16691348 ~ 16691617 (-)
G1424097 NA non-coding downstream 42446 16663592 ~ 16664169 (-)
G1424143 NA non-coding downstream 75544 16607911 ~ 16631071 (-)
G1424192 NA non-coding upstream 865 16712759 ~ 16712978 (-)
G1424196 NA non-coding upstream 3809 16715703 ~ 16715909 (-)
G1424204 yo84 non-coding upstream 13222 16725116 ~ 16725651 (-)
G1424233 LOC106564390 non-coding upstream 49481 16761375 ~ 16762169 (-)
G1424234 NA non-coding upstream 58543 16770437 ~ 16772957 (-)
G1424038 LOC106591467 other downstream 291756 16412058 ~ 16418005 (-)
G1424051 cbx6 other downstream 296487 16406731 ~ 16410128 (-)
G1424040 NA other downstream 336172 16369757 ~ 16370443 (-)
G1423891 NA other downstream 719773 15985273 ~ 15986842 (-)
G1424227 NA other upstream 138857 16850751 ~ 16851486 (-)
G1424218 NA other upstream 143583 16855477 ~ 16938699 (-)
G1424547 NA other upstream 745035 17456929 ~ 17457504 (-)

Expression


Co-expression Network