LOC110494948 (LOC106564393)


Basic Information

Item Value
gene id LOC110494948
gene name LOC106564393
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 16717096 ~ 16731389 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949139.1
agttgaaacaggtGTGCGTGTCCAGGGTTACAAGAAAAATGTGTACTATTGGGGctactccaggaccagggttggggggaAACGCTGCATAACTGACTCTGTAGTCCCCGTTGCATGGTGTTATCAAGTTGATGCAGAAAAACCTGCTTTTCTAGGCACTGCCCTCCGAATAGTAGATTGATGCACACAAAGAAGTCTCTCCTATTGTGagtggagaaaggagaggaagtgtATGAGGTAAACCGTGCTTTAGGACAAGACCAATATCCAGAGACGTTCAGACAGGGGAATACTGGTATATCTGAGATGGCAAAGCCTCCACCTCTGGTGCCCTACCCCAGGAACATCTGTATGGGCAAGCCTGAGGAGAGTGATCCCCAGAGGAGATGGAGCTATGGTCCCTCTCCCCCAGACCCATCTGTCCCAGGGCTTGGTGAAGGCAGACCTCCACCTCCAGTGCCCCACCCCAGGAAAATCAATAGGAGCAAGCCTGAGGAGAGTAAGCCCCAGAGGAGATGGAGCTAtggtccctcctctccctcacacacatccGGTCCAGGGGTTGATAGAGGCAGAAAGCCAGGCACCGCCCAGAAACCGCCCCCTGTGACCCAGAGGTCGGTGGGAAGGAATCCTCCACAAGAAGGCGGTTGTGACCCTCCGGATGGGGGGAGTGTGTCTGAATTCATTAAGAAGTTTGAAGCTAAAGAGGACCAGAACAAGCAGCTGGTGGTGCGTTGTCCTGTTGGTCCGCCTGCCGTCATCTACAGGGAGGACTCCGTTCCCCCTCTCTACGAAAAGGTTTTGGCTACGCAGGAAACTCGTacgTTCGGGTCGCCTGCCTTCGTTGACAGAGAAGAATCCAATGACTATATCTATGAAGAGGTTTTTGCTACGCATGAAACTCGTACGGTAGCAGTTCAACAGCGGATATGTGCAACCTATGTTCACTGTGTAAGGCCACCTCCTCCATTGCCGTTAAAGCAGGCACTCCCTCTGAAAGGCAGAATCAAAACACTCTCAAAAAGCAGCATTAGTGAAGAGGAAAAAGAAGATAACATCAAGGATGCAGATCGTCTGATGGAATGGTGGGAGAAGGTGAAAAGTGAACCATGGAAAGACCCTAAACTGGCCACGAAGGGAGAAGCAAAACTGTTCAAAGAGAAAGCCCAGCGGTTCCAGAATGCATTGCAGTTGTACAACCTCCTCCTGACTAAGCATGGCGAGACCCTAAAGAACCACATCATTGACCTCATCAGCATCGCAGACAACTTAGACAAGGTTTCCAAGGGAACCAAGATTGCTGGCATCACCGGGGGCGCCACGGGGGCGGTTGGAGGGGTGGCGGCTGCAGCAGGGGTGATCCTCGCCCCCTTCACCCTAGGGGCATCACTGGCCTTGACAGTGGTCGGTGTCGGTGTAGCTGCAGCTGGAGGGGTCACAGGGGCCTCTGCAGTTATTGCTAACAAAGTGAGCAGTGCACAGGACAGGAAGAAGATTGAGTTGATCCTTCAAGACTACCTGGCCCTGATGGGTGACATTGAAGCCTGCTTGAGGTTCATCAATGTGGGCATGGAGCACCTGAGGAAGCACAACCTCTCAACTAGACAGGAGGTCGACACAGAGGCCGTCAGAGTGGTCAGGGTGGCCATAGTGACAGGAGTGGGTAGCTCCAGTGCCATAGATGCCAGCAGTAAGGCATCGGGGATGCTCCAAGGCTTTGCTCTGGGCATGGATATCTATTTTACCCAGAAGGAGGATGGCAAAGGTGGCCCGAAGCTGAAGAAGGGATTGGAGTCCAAGTTTGGGAGAAAGATACGCGAAGTGGCTCAGCAGCTGAATGAAGGGCTGGATGAAGTGATCAAGGTCAAATATGAGCTAGTTGAAAATAATCTAATCCTCtgaagaaagggaaagggggatacctggtCTGTTGCTCAACTGaaatgtcttccgcatttaacccaacccctctgccttaatcgacagccctacacacacacaaaaatgtggTTTCCTCAAGGCTTCTTTGGGAAGGGTGATGGTTCCAGTGAAATTTTAAATGTTGGTGGCGGCTCATTGGACTTGATGTTATGCGATTACATGATTTAAGGTCAGTGTCTTGTGAATTGAGACTGGTTGACAGTCAGTAGTTCTCaattctctcctcagggaccctgAGCAGTTCCAGCGCTAGCGCACTTGATTCTGTTAATAGACACAATAGTAAAAACCGATGGAATTTTAAAAATATAACATTGCTATTAAACCAGAATAAATAACCTTTTGAGATCATTCTCCATTCTCTTCTAAAAATAACCATAAGAGTTGTAACCATAACAGAACCCTTTGTCTAAAACTTTTTAGAAATGGTTATTTATAGAACATTGTGGTATGTTGTCTACCAGGTTTCAGTTCACTACCAGGTTTCAGAATCACTGCAACATTTTCCATTGTCAAATCTATTGTCATATAAACCAATGttgtgaataaataaataattagaaGACATAGATTTAGTCATGTTCCTTTTTTTCAAATTTCAATTAATCTCTCAATGGACCTTGTAGGACTGTCTGTATATTATAACTGATAATGTACTTTCC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106564393 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949139.1 True 2606 mRNA 0.48 13 16717096 16731389

Neighbor

gene id symbol gene type direction distance location
LOC110494903 LOC106564394 coding downstream 5202 16706615 ~ 16711894 (-)
LOC110495074 LOC106564395 coding downstream 15268 16697311 ~ 16701828 (-)
LOC110508387 LOC106599573 coding downstream 42531 16564951 ~ 16674565 (-)
LOC118940340 NA coding downstream 164302 16548237 ~ 16552794 (-)
LOC110494901 NA coding downstream 180483 16526508 ~ 16536613 (-)
LOC110494933 LOC106591120 coding upstream 5108 16736497 ~ 16741532 (-)
LOC110494924 LOC106592628 coding upstream 89842 16819145 ~ 16836715 (-)
LOC110495067 LOC106590617 coding upstream 129001 16860390 ~ 16933566 (-)
LOC110494935 LOC106590780 coding upstream 207914 16939303 ~ 16968595 (-)
LOC110493425 LOC106594459 coding upstream 249344 16980733 ~ 16987774 (-)
G1424196 NA non-coding downstream 1187 16715703 ~ 16715909 (-)
G1424192 NA non-coding downstream 4118 16712759 ~ 16712978 (-)
G1424188 NA non-coding downstream 20284 16696585 ~ 16696812 (-)
G1424187 NA non-coding downstream 23933 16692877 ~ 16693163 (-)
G1424186 NA non-coding downstream 25479 16691348 ~ 16691617 (-)
G1424233 LOC106564390 non-coding upstream 29986 16761375 ~ 16762169 (-)
G1424234 NA non-coding upstream 39048 16770437 ~ 16772957 (-)
G1424249 NA non-coding upstream 74783 16806172 ~ 16806542 (-)
G1424224 NA non-coding upstream 111837 16843226 ~ 16843765 (-)
G1424038 LOC106591467 other downstream 302237 16412058 ~ 16418005 (-)
G1424051 cbx6 other downstream 306968 16406731 ~ 16410128 (-)
G1424040 NA other downstream 346653 16369757 ~ 16370443 (-)
G1423891 NA other downstream 730254 15985273 ~ 15986842 (-)
G1424227 NA other upstream 119362 16850751 ~ 16851486 (-)
G1424218 NA other upstream 124088 16855477 ~ 16938699 (-)
G1424547 NA other upstream 725540 17456929 ~ 17457504 (-)

Expression


Co-expression Network