XLOC_033213 (rps10)


Basic Information

Item Value
gene id XLOC_033213
gene name rps10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 54174696 ~ 54180699 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064514
ATGTCTGTATAAAGCGAAGAGAAATAATACAGGAAGTACAGCTAAGGACGTTCTTTCCGGCTCCGGTCTCTCAGCAAGAGTAAAGATGTTGATGCCCAAGAAGAACCGCATTGCTATCTATGAGCTCCTCTTTAAAGAGGGCGTCATGGTGGCCAAAAAAGATGTGCATCTCGCTAAACATCCAGAGCTCGCTGACAAGAACGTACCAAACCTTCACGTGATGAAGGCCATGCAGTCTCTGAAGTCATGTGGGTACGTCAAAGAGCAGTTTGCTTGGCGCCATTTCTACTGGTATCTGACCAATGAGGGCATCCAGTACCTGCGAGACTTCCTCCACCTGCCTCCAGAGATCGTGCCCGCAACCCTCCGCCGCCAGACCCGCCCAGAGACCGCCAGACCTCGTCCCAAGGGTCTTGAGGGTGAGAGACCGGCTCGTCTGGCCCGTGGCGAGGGAGACAGAGATGCTTACAGACGGTCTGCAGCTCAGCCCGGTGCAGACAAGAAGGCTGAGGCTGGTGCAGGTGCAGCCACAGAGTTCCAGTTTagAGGTGGCTTTGGCCGTGGCCGAGGACAGCAGCCACAGTGATTTTCCACATGATCTGTacaataaaggtttaaaagtatTTCTGTGTCAGATGTATTTATTATAATGGTGGCAGGTAATGTACGACAGAACTTCTTAAATAAATTAGCTGAAGATTCACAGTA
>TCONS_00064515
AGATGTTGATGCCCAAGAAGAACCGCATTGCTATCTATGAGCTCCTCTTTAAAGAGGGCGTCATGGTGGCCAAAAAAGATGTGCATCTCGCTAAACATCCAGAGCTCGCTGACAAGAACGTACCAAACCTTCACGTGATGAAGGCCATGCAGTCTCTGAAGTCATGTGGGTACGTCAAAGAGCAGTTTGCTTGGCGCCATTTCTACTGGTATCTGACCAATGAGGGCATCCAGTACCTGCGAGACTTCCTCCACCTGCCTCCAGAGATCGTGCCCGCAACCCTCCGCCGCCAGACCCGCCCAGAGACCGCCAGACCTCGTCCCAAGGGTCTTGAGGGTGAGAGACCGGCTCGTCTGGCCCGTGGCGAGGGAGACAGAGATGCTTACAGACGGTCTGCAGCTCAGCCCGGTGCAGACAAGAAGGCTGAGGCTGGTGCAGGTGCAGCCACAGAGTTCCAGTTTagAGGTGGCTTTGGCCGTGGCCGAGGACAGCAGCCACAGTGATTTTCCACATGATCTGTacaataaaggtttaaaagt
>TCONS_00064516
CTTTCCGGCTCCGGTCTCTCAGCAAGAGTAAAGATGTTGATGCCCAAGAAGAACCGCATTGCTATCTATGAGCTCCTCTTTAAAGAGGGCGTCATGGTGGCCAAAAAAGATGTGCATCTCGCTAAACATCCAGAGCTCGCTGACAAGAACGTACCAAACCTTCACGTGATGAAGGCCATGCAGTCTCTGAAGTCATGTGGGTACGTCAAAGAGCAGTTTGCTTGGCGCCATTTCTACTGGTATCTGACCAATGAGGGCATCCAGTACCTGCGAGACTTCCTCCACCTGCCTCCAGAGATCGTGCCCGCAACCCTCCGCCGCCAGACCCGCCCAGAGACCGCCAGACCTCGTCCCAAGGGTGAGACAATCATTTCTTCCTTTAAGAAAATTTAACTTTCAGAAATCAACCACAGTGTTTCAAAGCCGTgcataattgtaattttattttgataagtATGTTTTTTTGGAAAAATACACATTATGTAGAAATGCAAAGAATGTCAgcatattcagtttttttttaagcaaattagCAGTTAGCAAAAAATAAACTAACCAACCCTGTCTATCCATACATGGTATAATTGTCACAATTTTCACAAACATTTCTCatattgattttacata
>TCONS_00064517
AATGAAAATAAGTCAATCTTGAGCACATTTGCTGACGATGAATCGTTTTTATCGGACAGGATTTGGGCGCGACAGAGCTTCATGAATAGCACCAAGTCACCAtaATGTTGATGCCCAAGAAGAACCGCATTGCTATCTATGAGCTCCTCTTTAAAGAGGGCGTCATGGTGGCCAAAAAAGATGTGCATCTCGCTAAACATCCAGAGCTCGCTGACAAGAACGTACCAAACCTTCACGTGATGAAGGCCATGCAGTCTCTGAAGTCATGTGGGTACGTCAAAGAGCAGTTTGCTTGGCGCCATTTCTACT

Function

symbol description
rps10 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 9. Orthologous to several human genes including RPS10 (ribosomal protein S10).

GO:

id name namespace
GO:0000028 ribosomal small subunit assembly biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040426-1481 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 9. Orthologous to several human genes including RPS10 (ribosomal protein S10).

Ensembl:

ensembl_id ENSDARG00000034897

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064514 False 708 mRNA 0.51 6 54174696 54180699
TCONS_00064515 False 539 mRNA 0.55 5 54174782 54179860
TCONS_00064516 False 627 lncRNA 0.43 3 54177073 54180647
TCONS_00064517 True 309 mRNA 0.46 3 54177462 54180516

Neighbor

gene id symbol gene type direction distance location
XLOC_033212 NA coding downstream 623 54164932 ~ 54174073 (-)
XLOC_033211 tusc2a coding downstream 48233 54117004 ~ 54126463 (-)
XLOC_033210 hyal2a coding downstream 62768 54093057 ~ 54111928 (-)
XLOC_033209 hyal1 coding downstream 96073 54063032 ~ 54078623 (-)
XLOC_033208 cacna2d2a coding downstream 289182 53503273 ~ 53885514 (-)
XLOC_033214 SPDEF coding upstream 99666 54280365 ~ 54290227 (-)
XLOC_033215 ilrun coding upstream 144309 54325008 ~ 54348568 (-)
XLOC_033216 snrpc coding upstream 249714 54430413 ~ 54433995 (-)
XLOC_033217 sys1 coding upstream 257656 54438355 ~ 54444929 (-)
XLOC_033218 CR847944.2 coding upstream 278714 54459413 ~ 54465377 (-)
XLOC_033203 NA non-coding downstream 916628 53252557 ~ 53258068 (-)
XLOC_033199 BX649282.4 non-coding downstream 1141585 53032996 ~ 53033111 (-)
XLOC_033198 BX649282.5 non-coding downstream 1251207 52923373 ~ 52923489 (-)
XLOC_033186 NA non-coding downstream 2140040 52026491 ~ 52034656 (-)
XLOC_033220 NA non-coding upstream 317105 54497804 ~ 54523451 (-)
XLOC_033221 dre-let-7a-6 non-coding upstream 325759 54506458 ~ 54506586 (-)
XLOC_033222 NA non-coding upstream 567249 54747948 ~ 54754115 (-)
XLOC_033225 CU861466.1 non-coding upstream 634222 54814921 ~ 54815037 (-)
XLOC_033227 NA non-coding upstream 695478 54876177 ~ 54886711 (-)

Expression


Co-expression Network