LOC110485553 (LOC106590435)


Basic Information

Item Value
gene id LOC110485553
gene name LOC106590435
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 19029078 ~ 19032742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949221.1
TAGTTATTGTAGTCTAACTACACCACCAGTACACCAGACGCAATTGTCTTCGTAACAAACTCCTACACAAAGGGCAAAGCAAACCGTGGTCATGCAATATAGCCTACtcttggtgctttcaagacatctGATAACATGACCCTGCTGCAACAGCCCAGCTCTGATGCAATCCTGTACAGCCCTTTCTGGAAGGCTGTATAGAAGACCCTGTTTTCTATTCATCCTGGTGGCAGTGGCTGTCTCCGTGACCTACACCACCTTCGCCTtgaattggtggaatgacccaCAGCGACCCTCGGTAATCAGTCACACTGGAAAGACTCCTGATGATGACAGGACCAATCACACTGGAAAGATTGCTGATGATGATCAGGTGAACCCGCGTGTCTTGACCAATCGGAATGGTGTCCAATGGGAGGATCCCGGGCGGTACCACGTGGCATACCCGCGGGGATACAAATTCATAATGGATGAGCCGGAGAAGTGTCGGACCGGGAATCAGGCCCCGTTCCTGGTGCTGATGGCCCCCGTGGCGCCTGGTAACCTGGCCTCCCGGGACGCCATCCGCAGGACGTGGGGTAATGAGACCCTGGTGCATGGGAAGAAGGTACAAACGCTATTCATGTTAGGACTTCCTGGAGGACCAGGTGCCCAGGAGCTGCAGGAGAAGGTGAACCAGGAGAGCCGGGTGCACCACGACCTCCTCCAGAGCAACTTCAAGGACACCTACCATAACCTGACCATCAAGACCATGGTGATCCTCGAGTGGCTCGTCTCGCGGTGCCCTGAGGCCTCCTACGCCATGAAGATTGACTCAGACGTGTTCCTCAACGTCCAGAACCTTGTCTCCATGCTGGTCAACCCTGACACTCCCAAACAGAACTACATGACCGGTCTAGTCTGGTGGCACAGCCCGGTGCTGAGAAACCCCAACAACAAGTTCTTCCTGCCTTATGAGGTGATGGCTGAGTCGGAGTATCCTCCGTACCCTCTGGGGTTTGGCTACATCATGTCCATGGACCTCCCCAAGAAGATCATGGGGGTCACTCCACAGATCAAGCCCATCTACATCGAGGATGCCTACCTGGGGATGTGTCTGAAGCGACTGGGCATCTCCCCCACCAATCCTCCCAGCAAGTCACTCTTTGACGTCAACCCCATCTACAGCTACGGACGCTGCAAACTGTCCACCGTGGTTGCCGTGACGACGACCAAAGTGAGCCAGCTGCTGAGGTACTGGCAGGACTACACAAGGCCCGGCCCGCCGTGCTGAGAGGGTAATCACCACAGCAAACATTGCTTCTTCCTGTTTGGAAAACGGAATTCATGAAGACACTTCCTGTATGTTTCCCTTCCTGGAAATGTTGAATTGGAACTTTGGGTAAGAGACATTGGCTCTTGCATAAGAGACATCCGTTCACTCTTGTTGGGAGATCCATAGGTTGTTTGGTATTTTGCTAATGTATACCTCAACCCTTCCCTTTACATTGACTGTGGTGCAGTGAAGGTGGATAGGTGTTGGAGATGGCTTATTGGGCCTGTCTCAATACCTTTCAACTGTCACATGCTGCAACAAAAAGATCCCAAGCTGCATATTTGTATCATACAAAGAGAGCCTTAAGACTGGATCCTATCAGATCTGCCCTAGCCGACACCCGCATAGTGGTTGTATTGGTGGTGTCGGAGGTGGcactgtcaaatccacaagcggctccCGGCACTATACCTAaagtggacattgccattggctgacatatattgtgttattttatggttTACAtcaacctaccacacaaggcaataGCCTacgtgtcaacagtatgtttatgttataTAGTATTGTTGAGAAAtttggggttacttagaaatgtccttgttttgggGTGAAAAAcactttttgtccattaaaataacatcaaaatgatcagaaata
>XM_021556652.2
ACCCAACCTACAGTGGCTCCTTCTCTACCTGTGGGCAGCCAATTATTTGCTCATTTCTCCATCGTCAACATGCATTGAGGAAGAAGAAAGAAGACGTCAACCATGCGCCAATCTCGTTGAGCGTCATGAGCCGGATTTGATACAAAAAAACATGAGCCCAGCTCTGATGCAATCCTGTACAGCCCTTTCTGGAAGGCTGTATAGAAGACCCTGTTTTCTATTCATCCTGGTGGCAGTGGCTGTCTCCGTGACCTACACCACCTTCGCCTtgaattggtggaatgacccaCAGCGACCCTCGGTAATCAGTCACACTGGAAAGACTCCTGATGATGACAGGACCAATCACACTGGAAAGATTGCTGATGATGATCAGGTGAACCCGCGTGTCTTGACCAATCGGAATGGTGTCCAATGGGAGGATCCCGGGCGGTACCACGTGGCATACCCGCGGGGATACAAATTCATAATGGATGAGCCGGAGAAGTGTCGGACCGGGAATCAGGCCCCGTTCCTGGTGCTGATGGCCCCCGTGGCGCCTGGTAACCTGGCCTCCCGGGACGCCATCCGCAGGACGTGGGGTAATGAGACCCTGGTGCATGGGAAGAAGGTACAAACGCTATTCATGTTAGGACTTCCTGGAGGACCAGGTGCCCAGGAGCTGCAGGAGAAGGTGAACCAGGAGAGCCGGGTGCACCACGACCTCCTCCAGAGCAACTTCAAGGACACCTACCATAACCTGACCATCAAGACCATGGTGATCCTCGAGTGGCTCGTCTCGCGGTGCCCTGAGGCCTCCTACGCCATGAAGATTGACTCAGACGTGTTCCTCAACGTCCAGAACCTTGTCTCCATGCTGGTCAACCCTGACACTCCCAAACAGAACTACATGACCGGTCTAGTCTGGTGGCACAGCCCGGTGCTGAGAAACCCCAACAACAAGTTCTTCCTGCCTTATGAGGTGATGGCTGAGTCGGAGTATCCTCCGTACCCTCTGGGGTTTGGCTACATCATGTCCATGGACCTCCCCAAGAAGATCATGGGGGTCACTCCACAGATCAAGCCCATCTACATCGAGGATGCCTACCTGGGGATGTGTCTGAAGCGACTGGGCATCTCCCCCACCAATCCTCCCAGCAAGTCACTCTTTGACGTCAACCCCATCTACAGCTACGGACGCTGCAAACTGTCCACCGTGGTTGCCGTGACGACGACCAAAGTGAGCCAGCTGCTGAGGTACTGGCAGGACTACACAAGGCCCGGCCCGCCGTGCTGAGAGGGTAATCACCACAGCAAACATTGCTTCTTCCTGTTTGGAAAACGGAATTCATGAAGACACTTCCTGTATGTTTCCCTTCCTGGAAATGTTGAATTGGAACTTTGGGTAAGAGACATTGGCTCTTGCATAAGAGACATCCGTTCACTCTTGTTGGGAGATCCATAGGTTGTTTGGTATTTTGCTAATGTATACCTCAACCCTTCCCTTTACATTGACTGTGGTGCAGTGAAGGTGGATAGGTGTTGGAGATGGCTTATTGGGCCTGTCTCAATACCTTTCAACTGTCACATGCTGCAACAAAAAGATCCCAAGCTGCATATTTGTATCATACAAAGAGAGCCTTAAGACTGGATCCTATCAGATCTGCCCTAGCCGACACCCGCATAGTGGTTGTATTGGTGGTGTCGGAGGTGGcactgtcaaatccacaagcggctccCGGCACTATACCTAaagtggacattgccattggctgacatatattgtgttattttatggttTACAtcaacctaccacacaaggcaataGCCTacgtgtcaacagtatgtttatgttataTAGTATTGTTGAGAAAtttggggttacttagaaatgtccttgttttgggGTGAAAAAcactttttgtccattaaaataacatcaaaatgatcagaaata

Function

NR:

description
beta-1,3-galactosyltransferase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949221.1 False 1933 mRNA 0.50 5 19029078 19032029
XM_021556652.2 True 1936 mRNA 0.51 5 19029078 19032742

Neighbor

gene id symbol gene type direction distance location
LOC110514184 LOC106590506 coding downstream 48184 18949455 ~ 18980894 (-)
LOC118940349 LOC106590535 coding downstream 307161 18720958 ~ 18721917 (-)
LOC110485574 LOC106564445 coding downstream 312617 18713229 ~ 18716461 (-)
LOC118940348 NA coding downstream 321952 18564334 ~ 18707126 (-)
LOC110487190 LOC106564382 coding downstream 534958 18359593 ~ 18494120 (-)
LOC118940350 LOC106564453 coding upstream 3083 19035825 ~ 19050381 (-)
LOC110485549 LOC106564452 coding upstream 17983 19050725 ~ 19093965 (-)
LOC110485538 mcrip2 coding upstream 294930 19327672 ~ 19333234 (-)
LOC110485530 LOC106589785 coding upstream 301590 19334332 ~ 19342508 (-)
LOC110485544 LOC106564456 coding upstream 310857 19343599 ~ 19350789 (-)
G1425815 NA non-coding downstream 22378 19006375 ~ 19006700 (-)
G1425804 NA non-coding downstream 36704 18991967 ~ 18992374 (-)
G1425802 NA non-coding downstream 44337 18983737 ~ 18984741 (-)
G1425801 NA non-coding downstream 46407 18982415 ~ 18982671 (-)
G1425757 NA non-coding downstream 154790 18873909 ~ 18874288 (-)
G1425839 NA non-coding upstream 39999 19072741 ~ 19073367 (-)
G1425841 NA non-coding upstream 42156 19074898 ~ 19075236 (-)
G1425842 NA non-coding upstream 44959 19077701 ~ 19078271 (-)
G1425843 NA non-coding upstream 46404 19079146 ~ 19079442 (-)
G1425844 NA non-coding upstream 47206 19079948 ~ 19080199 (-)
G1425753 NA other downstream 162146 18866190 ~ 18866932 (-)
G1425652 NA other downstream 402037 18625756 ~ 18627041 (-)
G1425419 NA other downstream 702179 18319931 ~ 18326899 (-)
G1425986 NA other upstream 136638 19169380 ~ 19172677 (-)
G1426504 NA other upstream 766967 19799637 ~ 19803564 (-)
G1426547 NA other upstream 827559 19860301 ~ 19861663 (-)
LOC110485621 NA other upstream 986887 20019616 ~ 20021101 (-)

Expression


Co-expression Network