LOC118940350 (LOC106564453)


Basic Information

Item Value
gene id LOC118940350
gene name LOC106564453
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 19035825 ~ 19050381 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949220.1
cCCCTGTCACACACTCGCCCTACCCTGTAGGCTACAGAACACCTGTGAAGCTACACCAACTCCAGCATAGACCCATTGACGTGTGAGGCTCAGAGCCCACCTGGAGTGTGTTCTACTGGATAGACCTGAAACACAGGGGAGGGAGGTGCTGGGATTGTCCTGGGTTggtcgtacacacacacaggaggggtGTTCTTTCCTTCACCAGTCACTGCCACAAGGATCCATGGTCTCTCTGAGGAGGGGAACTGTCTGCACTCATGGAGAAACAAGGAGGGAATGGATGTAAACGTCAAGTCGTGGTCGAGAGCCCTGTACGACCACTGCGGTCTCTGGTGCGGCCGTgtttcatcttcctcctcttcctgtccacGGTCATCGTGATCATCCTCTTAGGTTTTCCTGACAGATTCTCCCAGACAGATTGGTGGAAAAACCTATCACTGTACACATACTACCATAGATGGACCAACCCCGACCGCCACCGTGGACCATCCCCAACCACCATTCCCCCAACCACAGTACCAGCCCCACCCTCAGCCACCATACGTCCGCTACCAACCAATCACTACCACTTTGGCTACCCTCGTAACTACCACTTCATCGTAGACGAACCGGACAAGTGTAATGCCCAGACCCCGTTCCTGGTGCTGATAGTCCCCGTGGCGCCCGGTAACCTGGCCGCCAGGGACGCCATCCGCAGGACGTGGGGTAATGAGACCCTGGTGCAGGGGAAGAAGGTACAGACGCTATTCATGCTAGGACTTCCTGGAGGACTAGGTGCCCAGGAGCTGCAGGAGAAGGTGAACCAGGAGAGCCAAGTGCATCATGATCTACTCCAGAGCAACTTCCTGGACTCTTACCTCAACCTCACCATTAAGACCATGGTGATTATGGACTGGCTGGCCACCCACTGCACCAATGCCACCTACGCCATGAAGATCGACTCAGACATGTTCCTCAACGTAGAGAACCTGATGACTATGTTGCTGAGACCGGACGTCCCCAAGGTGAACTACCTGACAGGGATGCTGATGTGGGATCGCCCGGTCATCCGGAACCCCAACTCCAAATGGTATGTTCCGGTGGAGATGTTAGCCGACAACCGATACCCGACCTACACACTTGGTATGGGATACGTGTTCTCCAACGACCTGCCGGAGAGGTTCGTGGCGGTATCCAAGGACATCAAGCTTTTTAATATAGAAGACGCCTATGTTGGCGCCTGTATGAAGAAACTGGGCCTCTCGCCCACAAACTCACCAGATCCTTGGCAATGGAAGGCCTATCTCGGCAAGTACAATCGCTGTGAATTTTCCAAAGTCATCACCTATATTTTGAGCCGCCCGTCCCAGATAGTGGACTACTGGATGGACCTGAAGAAGACACCTGGTTCACCCtgtccctagacactgatctagtGTCCATTTGGTATTTTTCATCCTAATGGTCGAGTCTAAGTCTTTAGGTAGCCAAACAGATATATATACCTGTATATATCGATGAAAAAAACAcagctgtagctctgccaccttccgcCTCAGATGTGGAAGGCTGACATCGGCgcatgtggtggattgagatgcagcccatgcaataaaacagatatctctagcttaaacagaccGTTTCTGATGGGAATTTTTATGTTACGCTTATTCAATTTCCGCGTGGACATTGACTCTGGTACTAGTACTAAGTTTCACGGACTCTATCAGTGTCCGAGGGGCAGGTAGCTGAGTGGCTAGTGttgtgccagtaactgaaaggttgctagttcaaatcccctaacagacaaggtgaaaaatatctgtcgatgtgcccttgagcaatgcacttaaccctaatttcttCAATGTTGATAATGACTGACCTTGGCTGTAACCCCATTCTTGGGGGGAGTtgagatatgcaaaaaaaaaagaaaaatcaaAGGTGTATAAAACAGACTTTTAGATGTGTgaaccaggacaaatataagcacctaCCTTGTTAGGACTCAATTACCCATAATGACATTGGGTAGGGTGGGAAATAAAGATGGGTGGTGGTGGGGCTGGTCGGGATGATGAAGTTAGGTCATTGAGTAGTTCTGAACTTGTAATGACTGTCGGAATGGGATATCTGACTTTCAAAGTCTTCATTTACAATGGTGGAACATACTTTGCAAAGGGATCTTTTGTGATTTTGTGATCCCGAATCTCAGGAATCCAAACAAATCCAGACAGATAGGAGGATGGGATCAGCATCTGTCTAGTCTCTTGTGATAGATTAACACTTTCACAGGCCAAAACTCACACAAGATGTGTCTCTGTTCACATAAGATTTGTCTCTGTTCACACAAGATTTGTCTCTGTTCACACAAGATTTGTCTCTGTTCACACAAGATTTGTCTCTGTTCACACAAGATTTGTCTCTGTTCACACAAGATTTGTCTCTGTTCACACAAGATTTGTCTCTGTTCACACAAGATTAGTCTCTGTTCACACAAGATTTGTCTCTGTTCACACAATATTTGTCTCTGTTCACACAAGATTTGTCTCTGTTCACACAAGATTTGTCTCTGTTCACACAAGATTTGTCTCTGCCCACACGATATTTGTCTCTGTGTTACATGATCATCTGTCTGCCAAATTCCATTGTGTTGTGACACCATTCGGGAGACGGTGTTCTAGAAACCAGTTGGGTAACCTGTAAGAAACACTGGTGAGAACCAAAAGCCATCCATTATTAATGATTCAGTCTCTAACTCTCAAAAACAATTGAAAGGAagattattttgtacataaaaaaaatagttttgtcAAGAAGTATTTGCCTAGTGAATTAACAGTAGCCCGTAGGCCTAGACCTTGCCCAAACCAAGTAGACCGATATAACAGTATCAAATATTTAACAgcataatatatttattttactggGTGAGTTCTTTTTCAATTCAGCGACATCTACATGAATAATTAAGTTACATATATTGTTCAACAAAGCCTCTTTTTATATCGGCATCAGTATATTAAGTCACACATTATGTTACACAAAGCTTCTCTCATCCTGTTTGCTTAGCATGACACTGTTCAAATGCTGTTTGACTTCTATGTACGTATTGCACAATTCATTTATTTGCAGAACAGTTGACTAAAACCTGGACAAGAATAAGGTGTGTTCCATTGTCAACGAAAGGAGTTCTGTTCTCTTCCATTGTCAACGAAAggagttctgttctgttctcaacTTCCACAATGAAAGGAGTTCTGTTCTGTTGTCAACTTCCACAATGAAAAGAGTTATGTTCTGTTGTCAACTTCCACAATGAAAggagttctgttctgttctcaacTTCCACAATGAAAGGAGTTCTGTTCTGTTGTCAACTTCCACAATGAAAGGAGGAGTCCATCATTATTCTCAATGTCTGATGACTGGTGTAACAAAATAAGATGATATGAGTAATGACATTAGGAAGGTAATGCAGAAGGCTGCAGCCCTGGAAAGCTATGAATCACAGGAGGCttgtgaggggaggatggctcataataatggctggaatgaaggGAATTGTATCAACCACATGGGAAAAAtgagtttgataccattccatttattccgttccagccatatgagcctgtcctccccaattcagGTGCAACCAGCCACCTGTGCTATGAATATGATGTGGCATGTGTGTCTATGTTCTTTGTTAAGGACATCATCGTTGTGACAATATGAACAATGATGATATTGAGATTATTTATGTTATGAAAAGCACAATAAAAGTTCAATAAATGATTTGTATTATTTACGATCATAATCATTGACATGGTGAATGCATTGCAGTTGACAACAgggatctttaaaaaaaagagagacaggGTTTAACTGTCAGAGATTTGTCTCGTCGAAATGTTGACAATAAAGGCTACTTAATACTCTGTT

Function

NR:

description
beta-1,3-galactosyltransferase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949220.1 True 3933 mRNA 0.44 4 19035825 19050381

Neighbor

gene id symbol gene type direction distance location
LOC110485553 LOC106590435 coding downstream 3083 19029078 ~ 19032742 (-)
LOC110514184 LOC106590506 coding downstream 54931 18949455 ~ 18980894 (-)
LOC118940349 LOC106590535 coding downstream 313908 18720958 ~ 18721917 (-)
LOC110485574 LOC106564445 coding downstream 319364 18713229 ~ 18716461 (-)
LOC118940348 NA coding downstream 328699 18564334 ~ 18707126 (-)
LOC110485549 LOC106564452 coding upstream 344 19050725 ~ 19093965 (-)
LOC110485538 mcrip2 coding upstream 277291 19327672 ~ 19333234 (-)
LOC110485530 LOC106589785 coding upstream 283951 19334332 ~ 19342508 (-)
LOC110485544 LOC106564456 coding upstream 293218 19343599 ~ 19350789 (-)
cxcl12b cxcl12b coding upstream 371885 19419049 ~ 19432304 (-)
G1425815 NA non-coding downstream 29125 19006375 ~ 19006700 (-)
G1425804 NA non-coding downstream 43451 18991967 ~ 18992374 (-)
G1425802 NA non-coding downstream 51084 18983737 ~ 18984741 (-)
G1425801 NA non-coding downstream 53154 18982415 ~ 18982671 (-)
G1425757 NA non-coding downstream 161537 18873909 ~ 18874288 (-)
G1425839 NA non-coding upstream 22360 19072741 ~ 19073367 (-)
G1425841 NA non-coding upstream 24517 19074898 ~ 19075236 (-)
G1425842 NA non-coding upstream 27320 19077701 ~ 19078271 (-)
G1425843 NA non-coding upstream 28765 19079146 ~ 19079442 (-)
G1425844 NA non-coding upstream 29567 19079948 ~ 19080199 (-)
G1425753 NA other downstream 168893 18866190 ~ 18866932 (-)
G1425652 NA other downstream 408784 18625756 ~ 18627041 (-)
LOC110487190 LOC106564382 other downstream 662123 18359593 ~ 18494120 (-)
G1425419 NA other downstream 708926 18319931 ~ 18326899 (-)
G1425986 NA other upstream 118999 19169380 ~ 19172677 (-)
G1426504 NA other upstream 749328 19799637 ~ 19803564 (-)
G1426547 NA other upstream 809920 19860301 ~ 19861663 (-)
LOC110485621 NA other upstream 969248 20019616 ~ 20021101 (-)

Expression


Co-expression Network