LOC110485538 (mcrip2)


Basic Information

Item Value
gene id LOC110485538
gene name mcrip2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 19327672 ~ 19333234 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949231.1
ACGCGTACTGTAGGATAGGGTTGCCTCTCACAAATGGGAATTGAATCAATATAACGAACTATTTTCTATTCAAAAACATTAATCGGAAGGGTAGGAGTTTCTTCTCCAACAGACATTTGAATTCCATATCCGTATTGAATCACCTTGGTTGACCTATTGGCTATACCCTTGAAGCACTAGCAGACTGGCTCTTTAACCAAACACATGCTTATTCGTAGCGGCGTCGATCACAGCACAGGACAAGGAACACATTGCAGTAACAGCACCGAGATCTCTTAACCGAACCGGAGACGTAGGCTACGTAGCACTGAGCAGCTGACTTGGAAACACAGGCGCTATAATTTTCCCAACGTGGCTGCGTCAAGAGAACTCGACCAAAAAGGGGATTGCTCAAGGGGATCGATTTAAAGACCACCACGGTATTTGGAGTCGACACATTGTAGGCTACCACTCTCGACTTGTTGAAGATAACCCACTTATTTTTCATTCGCAAAACTGAAGTTCTCGGCTTTCACATGATGTACACTATTACTAGAGGTCCCAGTAAACTTGTTACACAGCGCAGGACAGGTCCCACGCAGCAAATTGAGAATAAAACCAACGACTTGAAGCTCAAACCGACACCCTGGTTATCCTCAAACTCTCCAACCCCTAAGATAGTGTTTAATCGCCTGAACGGGAAGAGATACCACACTGCAGCCTCACAGAAGGAAGACACCACATCTGAAGGCTTCACCCCGGCCCATGAAGAGAATGTCCGATTTGTGTACGAAGCATGGCAGGAAATCGAGCAGCAGCTGGCAGGAGATAGAGAAGGCCGTGTGGAGCCTGCTGCTGTATGTGGCCAGGGGCCCGTGCAGTACGCAGAGAAGACGCCCAGTACCACAACGAAGAACTTTGTGCCTATAGACCTGGAGGAGTGGTGGGCCCAGCGCTTCCTGGCCAACATCGCTAACCTGTCGTGACAGGGAGAGAAGGGACAGGAGGTGCTAACTTGCGTGGAAGCCACATGGGCCAAGCTGTGATCAGAAGAAGAGGtgctggaggggtggagagaggacatTCTGGTTCTGAAGCTACAGTTTAGTGGGCTTCCTGTATTTTGTACCCAGTATTTTGGGTTCAAAGGAATACTGATATCTGCACCGTGCTAGGGGagtgtgtgacacacacacattgctgtACCCCTGAATGGTCCTGAAGCTACGAACTTTTAGACTGAACGCTCCACCTCCAAGGAAAATGCCTGTTCCTGATTGGCTAATCAACCAGAAGAACTAATTCATGAAGAGTGTCTGATTTTTCTTCCGCTTGTGTTTTCTTTTTAACAAGTACCTCCCTGCCCCAACATGATTTGTGCTCAGATTGAATGAAGTCTATTTCTTGGCTGGTCTTTGGAGAAAAACAGTAAAATATTTTTCACGA

Function

symbol description
mcrip2 Predicted to be located in cytoplasmic stress granule and nucleus. Orthologous to human MCRIP2 (MAPK regulated corepressor interacting protein 2).

NR:

description
MAPK regulated corepressor interacting protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949231.1 True 1425 mRNA 0.47 5 19327672 19333234

Neighbor

gene id symbol gene type direction distance location
LOC110485549 LOC106564452 coding downstream 233707 19050725 ~ 19093965 (-)
LOC118940350 LOC106564453 coding downstream 277291 19035825 ~ 19050381 (-)
LOC110485553 LOC106590435 coding downstream 294930 19029078 ~ 19032742 (-)
LOC110514184 LOC106590506 coding downstream 346778 18949455 ~ 18980894 (-)
LOC118940349 LOC106590535 coding downstream 605755 18720958 ~ 18721917 (-)
LOC110485530 LOC106589785 coding upstream 1098 19334332 ~ 19342508 (-)
LOC110485544 LOC106564456 coding upstream 10365 19343599 ~ 19350789 (-)
cxcl12b cxcl12b coding upstream 89032 19419049 ~ 19432304 (-)
LOC110485531 LOC106564462 coding upstream 166990 19500224 ~ 19501417 (-)
LOC110485541 xpnpep1 coding upstream 191603 19524837 ~ 19539688 (-)
G1425996 NA non-coding downstream 121326 19206114 ~ 19206346 (-)
G1425991 NA non-coding downstream 149466 19177943 ~ 19178206 (-)
G1425988 NA non-coding downstream 154469 19172861 ~ 19173203 (-)
G1425982 NA non-coding downstream 165262 19161686 ~ 19162410 (-)
G1425980 NA non-coding downstream 172951 19154297 ~ 19154721 (-)
G1426067 NA non-coding upstream 3195 19336429 ~ 19337208 (-)
G1426083 NA non-coding upstream 6761 19339995 ~ 19340389 (-)
G1426093 NA non-coding upstream 28480 19361714 ~ 19362253 (-)
G1426115 NA non-coding upstream 68436 19401670 ~ 19406769 (-)
G1425986 NA other downstream 154995 19169380 ~ 19172677 (-)
G1425753 NA other downstream 460740 18866190 ~ 18866932 (-)
LOC110485574 LOC106564445 other downstream 611288 18713229 ~ 18716461 (-)
G1425652 NA other downstream 700631 18625756 ~ 18627041 (-)
G1426504 NA other upstream 466475 19799637 ~ 19803564 (-)
G1426547 NA other upstream 527067 19860301 ~ 19861663 (-)
LOC110485621 NA other upstream 686395 20019616 ~ 20021101 (-)
G1426626 LOC106590134 other upstream 728446 20061680 ~ 20063618 (-)
G1427350 LOC106589837 other upstream 916561 20249795 ~ 20250083 (-)

Expression


Co-expression Network