LOC110485530 (LOC106589785)


Basic Information

Item Value
gene id LOC110485530
gene name LOC106589785
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 19334332 ~ 19342508 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556626.2
ATGCtgtgggatagagacagagagagggtagggtagagggcaACAGATGGAGACATGAGAAATACAAAAATACTTTGTTTTTGTTTAAAACTACTAACTGTTTAGAGAGCAAGAAGTCATACAACAGAGAACCGATTATTTTGCTGCATCCTCATTCATCCAATTTATTCTAACGACTGAAGAAGGAATGTCAAGACTATCTTCGGTGGACTCCCGAGTGCCGATCTACCAAAGAAGTGTCACAGTTTGCAGCCAACTTGAACAATATTGAGACGTCTTTCCAAGCTTCGTTGGCCTATTAAGAAATGTTAACTTTATGACAGTGTTAATGCACTGTTGTCTGTCCAACAGCATAGCAGAAGTGTTTTGAACAGTCTACACCGCAGAATTGTGAGTCAGTGACCGTATGGACTCGGCGCAAAAATGCTTCAACTCGGAGACGAAATCGCCCTATTCTCTGTGGTGTTCGCGTTCGTTCTCCTCGGAACACTGAGCCCGATATGGTCCACTGCCCTCACCGCCTGCCTCTATGCCTTTCTGATCATGTTCCGTTTTCCCCAAGTCCCGACCAGCCAGGCGAGACAGGTGCTTCGGCCCGCTAAGAACGCTGCTTCGGGTGGGGTGTCCCTAGTCGCTCACCGGGGTGGAGGGCATGATGCGCCGGAGAATACCATGGCTGCCATCCGGGAGGCACATAAGAACGGGGCGACCGGCGTAGAGCTGGACTTGGAGTTCACATCAGATGGAGTCCCTATTCTGATGCACGATGAGACTGTAGACCGAACCACCAACGGGTCGGGACCCCTCACACAGCTAAGCTTCTCTGGGCTGTGTAAACTGGACGCTGCCGCTAAGCACCGACTCCGTGACAAGTTCCAGGGAGAGAAGGTCCCCACTCTGCAGGAGGCTGTGGAGGAATGCATCAAACTGCAGCTCACCATCTACTTTGATGTCAAAGGTCACCCAGATGAGgcagCGGCAGCCCTAAAGGAGATGTATCGGAAACACCCTGTGCTTTACAACACCAGCATCGTCTGTTCCTTTGAGCCCAAAGTCATCTACAGGATGCGTCAGGCTGACCCGGAAGTGGTGACGGCGCTGACCCACCGGCCATGGAGCCTTAGTCGGTTGGGTGACGGCACGCCGCGCTTCTCGTCGTTATGGAAACACCACTGTATGCAGGTGCTAGACGTGATACTGGACTGGGCCCACCACCACCTGCTCTGGAACCTCTGTGGCGTCTCTGCCTTCCTGGTGCAGAAGAACTTCATATCACTGGACTATGTCCAGTACTGGGCTCAGAGAGGGGTTGAGGTGGTGGGCTGGACAGTCAACACAGCTGAGGAGAAACAATACTACCAGGAGATACTCAACATCAACTACATCACTGACAGCCTACTGGAGAACTGTGATCCTCACTACTGAacagacatcacacacacagaaacctgcacaaaacacacacacacacactgaagcgaGTTAAAATCCCATATTGGACACATACGGCTTTAACCCTGTGTTACTTATCTTACTGTGTATTGTATGCCCAAGACACACGATACAAATATTCAGTCCAGTACAGAGCCTTTAACTTACAGGGCGACTTCATTTAGTGAACAACAGGGCGACTTCATTTAGTGAACAACATGTCTCCATGTTCACCTATGTACTGTGATAACCAACTCAGGAGTGTACCTACTGCAcagttacattttagtcatttagacaCTTTTATCTAGGGAGATTTACactagtgagtgcatacattttcataatggtcccccgtgggaattgaacccacaaaccctggtgttgcaagccaccatgctctaccaactgagccacacgggaccacaGCTCATACATATGTCATATTTTGAATCTATGACCATTCCCATTGTCAAGGATCTGTGTAAATATGAACACTTCATACTCACACAGTGCAATAATGTGCTTTTCTGAAGGGATAGTCTTAACTGGAATAAGGAAAAGTCTGTGGGCATCCAACCAGCTTCCAATGAAATACTAACCTAATGCATTAACTTGAATGAAATAATCTTATAGGAATGGAAAAATAAACAAGTATGGATGAAG

Function

NR:

description
glycerophosphodiester phosphodiesterase 1-like

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006071 glycerol metabolic process biological_process
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function

KEGG:

id description
K19179 GDE1; glycerophosphoinositol glycerophosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556626.2 True 2097 mRNA 0.48 7 19334332 19342508

Neighbor

gene id symbol gene type direction distance location
LOC110485538 mcrip2 coding downstream 1098 19327672 ~ 19333234 (-)
LOC110485549 LOC106564452 coding downstream 240367 19050725 ~ 19093965 (-)
LOC118940350 LOC106564453 coding downstream 283951 19035825 ~ 19050381 (-)
LOC110485553 LOC106590435 coding downstream 301590 19029078 ~ 19032742 (-)
LOC110514184 LOC106590506 coding downstream 353438 18949455 ~ 18980894 (-)
LOC110485544 LOC106564456 coding upstream 1091 19343599 ~ 19350789 (-)
cxcl12b cxcl12b coding upstream 79758 19419049 ~ 19432304 (-)
LOC110485531 LOC106564462 coding upstream 157716 19500224 ~ 19501417 (-)
LOC110485541 xpnpep1 coding upstream 182329 19524837 ~ 19539688 (-)
LOC110487230 LOC106590349 coding upstream 198346 19540854 ~ 19581027 (-)
G1425996 NA non-coding downstream 127986 19206114 ~ 19206346 (-)
G1425991 NA non-coding downstream 156126 19177943 ~ 19178206 (-)
G1425988 NA non-coding downstream 161129 19172861 ~ 19173203 (-)
G1425982 NA non-coding downstream 171922 19161686 ~ 19162410 (-)
G1425980 NA non-coding downstream 179611 19154297 ~ 19154721 (-)
G1426093 NA non-coding upstream 19206 19361714 ~ 19362253 (-)
G1426115 NA non-coding upstream 59162 19401670 ~ 19406769 (-)
G1426130 NA non-coding upstream 112340 19454848 ~ 19455061 (-)
G1425986 NA other downstream 161655 19169380 ~ 19172677 (-)
G1425753 NA other downstream 467400 18866190 ~ 18866932 (-)
LOC110485574 LOC106564445 other downstream 617948 18713229 ~ 18716461 (-)
G1425652 NA other downstream 707291 18625756 ~ 18627041 (-)
G1426504 NA other upstream 457201 19799637 ~ 19803564 (-)
G1426547 NA other upstream 517793 19860301 ~ 19861663 (-)
LOC110485621 NA other upstream 677121 20019616 ~ 20021101 (-)
G1426626 LOC106590134 other upstream 719172 20061680 ~ 20063618 (-)
G1427350 LOC106589837 other upstream 907287 20249795 ~ 20250083 (-)

Expression


Co-expression Network