LOC110485544 (LOC106564456)


Basic Information

Item Value
gene id LOC110485544
gene name LOC106564456
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 19343599 ~ 19350789 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949229.1
GTGGTGTGTGGTATACCGGACGATTCCGCACTGCCCCCCACCTCCACACCCGCTTCTCTAAATGGCTGTGGTTGAGATATAAAAGACTGTTGTGGAGTAAGGACGATGGCATACAGTCTTGTGGTTCCACCTGCATCACATTTTCACACTTCCACACTACAGCGGTAGCTGAGGAGCATGGCCTCCGGTATTCTGAGCCGCCATCTTGCTTCCTCTCTGAGACCCAGCCGTGGGTTGTCTGCTTCAGGACACCGCCATCAACAAACAACCGCTAAAAGAGTTGAGGAAGTTGAGTTTGATGGTCCTTGTATGAAGACGGAGGTTCCAGGTCCCAGATCTAAGATCCTAGCACAACAACTGGAGAGTATTCAGAGTGTTGTCCAGGTGAACTTCTTCTGTGACTATGAGGAGAGTAAAGGCAACTACTTGGTGGACGTGGATGGGAACCGCATGCTGGATGTCTACACCCAGATCGCATCCATACCCATAGGATACAATCACCCGGCACTCACAAAAGTCATGACGGATCCAAAAAATATGGGAACGTTTGTCAACCGACCAGCTCTTGGGATGATGCCACCAGAGCAATTCTCTGAGAAGCTTGTCAACGGCCTGATGGCAGTGGCACCCAAGGGCTTCAGTCGGGTCCAGACCATGGCCTGTGGATCCTGCTCCAATGAGAACGCCTACAAAGCCATCTTCATCTGGTACAGAAACAAGATGAGAGGAACTCCGGAACCAACTCCAGAGGAAGTCAGAACTAGTGTCATCAACCAGGTTCCTGGCTGCCCTGACCTGACTCTTCTGTCCTTCATGGGCGGATTTCACGGAAGAACTCTGGGCTGTCTGGCCACCACTCACACCAAGGCCATACAGAAGCTAGACGTGCCGTCTTTTGACTGGCCCATCGCCCCCTTCCCCCAGCTGAGGTACCCCCTGGACCAGTTTGAGAGGGAGAACGCACGGGAGGAGGCACGCTGCCTGGAGGAGGCGGAGGACCTGATAGTGAAGTGGAATCAGAAGGGTCGGCACGTGGCGGGGGTGGTGATCGAGCCAATCCAGGCAGAGGGAGGGGATAACCACGCCTCCTTCGACTTCTACAGGAAGCTCAGGGGAATCACCAAGAAGCATGGCTGTGCCTTCCTAGTGGATGAGGTGCAGACAGGGGGTGGGTCTACGGGGAAATTCTGGGCCCACGAGCACTGGGGATTGGACGACCCCGCTGACATCGTCTCCTTCAGCAAGAAGATGCTGACAGGAGGATACTACCAGAAAGATAGCTTTCAGCCTGacaagCCGTTCAGGATCTTCAACACGTGGCTTGGAGACCACACTAAGAACCTGTTGCTGACTGAGGTCATAAAGGTCATCAAGACAGAAAACCTGCTGGACCAGGCCAAGAGGTCAGGCAAGGTCATGCTGGAGGGACTCTACGACCTACAGGATAAGTACCCCCACTTGCTCAGTAAAGCGAGGGGCATCGGAACGTTCTGTGCCATCGATGTTAAGGATGAAGACACACgcaacctcctcctcctcaaggCCAGGAATAAGGGTGTGGTTCTAGGGGGCTGTGGAACCCAGTCTATCCGGTTCCGACCAGCTCTGGTGTTCACGGAACACCATGCTCATCTCTTCCTGGATATCTTTAATGACGCAATCGCTGAGCTCAAGTAGAGTCTACACAGGAATCCAATGTGGCCCTGCTCAAACAGACCCATACTGTCAATCTGCAGTGAAGAGGTTGACACTCctccaatcaatcaaatgtatttacaaagcccttttaacatcagctgatgtcacaaagtgcttttacagaaatccagcctacaactccaaacagcaagcaatgcagatgtagaagcacggtgtctaggaaaaactccctagaaaggcaggaacctaggaggaaacctagagaggaaccaggctctgaggggtggccagtcctcttctggctgtgctgggtggagatgaAGGGTATATGGCCAGATGGTTCTTCAAGATCTTCATAGACGACCATCAGGGTATACACTCCTGTATATTATTGTACATTATTTCACTCCAACTCTTTTATGAAAATTATTTCCATAAATGACTGTGGGATGATTGATTGCAATGGACTTTCTGAAGGTCAAATAACTGTAGACATTTTCTGCAGAGTGTTTTGTGTACTGTACCTTAAAATAAACCTGTCAAATATG
>XM_036949230.1
TAGTGGTGTGTGGTATACCGGACGATTCCGCACTGCCCCCCACCTCCACACCCGCTTCTCTAAATGGCTGTGGTTGAGATATAAAAGACTGTTGTGGAGTAAGGACGATGGCATACAGTCTTGTGGTTCCACCTGCATCACATTTTCACACTTCCACACTACAGCGGTAGCTGAGGAGCATGGCCTCCGGTATTCTGAGCCGCCATCTTGCTTCCTCTCTGAGACCCAGCCGTGGGTTGTCTGCTTCAGGACACCGCCATCAACAAACAACCGCTAAAAGAGTTGAGGAAGTTGAGTTTGATGGTCCTTGTATGAAGACGGAGGTTCCAGGTCCCAGATCTAAGATCCTAGCACAACAACTGGAGAGTATTCAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACATCTCTGTCCCCCTCTACAGAGTGTTGTCCAGGTGAACTTCTTCTGTGACTATGAGGAGAGTAAAGGCAACTACTTGGTGGACGTGGATGGGAACCGCATGCTGGATGTCTACACCCAGATCGCATCCATACCCATAGGATACAATCACCCGGCACTCACAAAAGTCATGACGGATCCAAAAAATATGGGAACGTTTGTCAACCGACCAGCTCTTGGGATGATGCCACCAGAGCAATTCTCTGAGAAGCTTGTCAACGGCCTGATGGCAGTGGCACCCAAGGGCTTCAGTCGGGTCCAGACCATGGCCTGTGGATCCTGCTCCAATGAGAACGCCTACAAAGCCATCTTCATCTGGTACAGAAACAAGATGAGAGGAACTCCGGAACCAACTCCAGAGGAAGTCAGAACTAGTGTCATCAACCAGGTTCCTGGCTGCCCTGACCTGACTCTTCTGTCCTTCATGGGCGGATTTCACGGAAGAACTCTGGGCTGTCTGGCCACCACTCACACCAAGGCCATACAGAAGCTAGACGTGCCGTCTTTTGACTGGCCCATCGCCCCCTTCCCCCAGCTGAGGTACCCCCTGGACCAGTTTGAGAGGGAGAACGCACGGGAGGAGGCACGCTGCCTGGAGGAGGCGGAGGACCTGATAGTGAAGTGGAATCAGAAGGGTCGGCACGTGGCGGGGGTGGTGATCGAGCCAATCCAGGCAGAGGGAGGGGATAACCACGCCTCCTTCGACTTCTACAGGAAGCTCAGGGGAATCACCAAGAAGCATGGCTGTGCCTTCCTAGTGGATGAGGTGCAGACAGGGGGTGGGTCTACGGGGAAATTCTGGGCCCACGAGCACTGGGGATTGGACGACCCCGCTGACATCGTCTCCTTCAGCAAGAAGATGCTGACAGGAGGATACTACCAGAAAGATAGCTTTCAGCCTGacaagCCGTTCAGGATCTTCAACACGTGGCTTGGAGACCACACTAAGAACCTGTTGCTGACTGAGGTCATAAAGGTCATCAAGACAGAAAACCTGCTGGACCAGGCCAAGAGGTCAGGCAAGGTCATGCTGGAGGGACTCTACGACCTACAGGATAAGTACCCCCACTTGCTCAGTAAAGCGAGGGGCATCGGAACGTTCTGTGCCATCGATGTTAAGGATGAAGACACACgcaacctcctcctcctcaaggCCAGGAATAAGGGTGTGGTTCTAGGGGGCTGTGGAACCCAGTCTATCCGGTTCCGACCAGCTCTGGTGTTCACGGAACACCATGCTCATCTCTTCCTGGATATCTTTAATGACGCAATCGCTGAGCTCAAGTAGAGTCTACACAGGAATCCAATGTGGCCCTGCTCAAACAGACCCATACTGTCAATCTGCAGTGAAGAGGTTGACACTCctccaatcaatcaaatgtatttacaaagcccttttaacatcagctgatgtcacaaagtgcttttacagaaatccagcctacaactccaaacagcaagcaatgcagatgtagaagcacggtgtctaggaaaaactccctagaaaggcaggaacctaggaggaaacctagagaggaaccaggctctgaggggtggccagtcctcttctggctgtgctgggtggagatgaAGGGTATATGGCCAGATGGTTCTTCAAGATCTTCATAGACGACCATCAGGGTATACACTCCTGTATATTATTGTACATTATTTCACTCCAACTCTTTTATGAAAATTATTTCCATAAATGACTGTGGGATGATTGATTGCAATGGACTTTCTGAAGGTCAAATAACTGTAGACATTTTCTGCAGAGTGTTTTGTGTACTGTACCTTAAAATAAACCTGTCAAATATG
>TU1632740
ctccaatcaatcaaatgtatttacaaagcccttttaacatcagctgatgtcacaaagtgcttttacagaaatccagcctacaactccaaacagcaagcaatgcagatgtagaagcacggtgtctaggaaaaactccctagaaaggcaggaacctaggaggaaacctagagaggaaccaggctctgaggggtggccagtcctcttctggctgtgctggg

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0009448 gamma-aminobutyric acid metabolic process biological_process
GO:0003867 4-aminobutyrate transaminase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949229.1 False 2207 mRNA 0.51 16 19343599 19350787
XM_036949230.1 False 2437 mRNA 0.51 16 19343599 19350789
TU1632740 True 218 lncRNA 0.47 1 19343835 19344052

Neighbor

gene id symbol gene type direction distance location
LOC110485530 LOC106589785 coding downstream 1091 19334332 ~ 19342508 (-)
LOC110485538 mcrip2 coding downstream 10365 19327672 ~ 19333234 (-)
LOC110485549 LOC106564452 coding downstream 249634 19050725 ~ 19093965 (-)
LOC118940350 LOC106564453 coding downstream 293218 19035825 ~ 19050381 (-)
LOC110485553 LOC106590435 coding downstream 310857 19029078 ~ 19032742 (-)
cxcl12b cxcl12b coding upstream 71477 19419049 ~ 19432304 (-)
LOC110485531 LOC106564462 coding upstream 149435 19500224 ~ 19501417 (-)
LOC110485541 xpnpep1 coding upstream 174048 19524837 ~ 19539688 (-)
LOC110487230 LOC106590349 coding upstream 190065 19540854 ~ 19581027 (-)
LOC110485621 NA coding upstream 668827 20019616 ~ 20021101 (-)
G1426083 NA non-coding downstream 3210 19339995 ~ 19340389 (-)
G1426067 NA non-coding downstream 6391 19336429 ~ 19337208 (-)
G1425996 NA non-coding downstream 137253 19206114 ~ 19206346 (-)
G1425991 NA non-coding downstream 165393 19177943 ~ 19178206 (-)
G1425988 NA non-coding downstream 170396 19172861 ~ 19173203 (-)
G1426093 NA non-coding upstream 10925 19361714 ~ 19362253 (-)
G1426115 NA non-coding upstream 50881 19401670 ~ 19406769 (-)
G1426130 NA non-coding upstream 104059 19454848 ~ 19455061 (-)
G1426132 NA non-coding upstream 111171 19461960 ~ 19462243 (-)
G1425986 NA other downstream 170922 19169380 ~ 19172677 (-)
G1425753 NA other downstream 476667 18866190 ~ 18866932 (-)
LOC110485574 LOC106564445 other downstream 627215 18713229 ~ 18716461 (-)
G1425652 NA other downstream 716558 18625756 ~ 18627041 (-)
G1426504 NA other upstream 448920 19799637 ~ 19803564 (-)
G1426547 NA other upstream 509512 19860301 ~ 19861663 (-)
G1426626 LOC106590134 other upstream 710891 20061680 ~ 20063618 (-)
G1427350 LOC106589837 other upstream 899006 20249795 ~ 20250083 (-)

Expression


Co-expression Network