LOC110485621


Basic Information

Item Value
gene id LOC110485621
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 20019616 ~ 20021101 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949254.1
GATGGCTGCAATGCGATGCACTGTTTCTAAACCGGGTCGTAAAATCGTAGAAGAAAAAGCTAGCTGACAATCCCGGAAAGGAACAAACATTGGTTTGTTTGGCTTGGCAACCCATCACCCTGAGCTGGGCCTAACAATACACAATGCCTGAAGTCAAATCGATGTTCAGAGAAGTGTTGCCCAAACAAGGGCAGTTGTCCATGGAGGATGTCCCCACCATGGTGCTGTGTAAGCCCAAGCTGATGCCTCTGAAATCAGTCACCCTGGAGAAACTGGAGAAGATGCAACTGGAGGCCCAGGAGGCCATCAAGCAACAGGATCTGGCACTGAAAGAGCAGCAGGAGACACAGTAGACATGCAATGGCAGCCCATGGAGTAGTAGGGTCAGTAGACACAAAATGGACAATAGTCAGAGTAGTTTTATTATCAAGCAACAGGAACTGAATGAGCCACAATGGAGGACAGTAGCTACACAAGTAGACACAAAATGGACTACAGACAGAAGTTAAGATGGATACAATGGAGGGCAGAGGTTCACACTAGTCACAACCTAATATTGCAATATAGCACTGTTGGCATCAATCTCATGGATTATTTTGATTGCTGTGAATGTATAATAGCCTTGTAATTATGGGAAGTCTTATTTCTGAGAGAAGTTGAATTGGAGTTTAGGTAAATAACATCTGTTGTGAACATGTTCTTCAAATAAAACTAAGATTTATTTCCCCTTTTA
>TU1633329
ATCGTAGAAGAAAAAGCTAGCTGACAATCCCGGAAAGGAACAAACATTGGTTTGTTTGGCTTGGCAACCCATCACCCTGAGCTGGGCCTAACAATACACAATGCCTGAAGTCAAATCGATGTTCAGAGAAGTGTTGCCCAAACAAGGGCAGTTGTCCATGGAGGATGTCCCCACCATGGTGCTGTGTAAGCCCAAGCTGATGCCTCTGAAATCAGTCACCCTGGAGAAACTGGAGAAGATGCAACTGGAGGCCCAGGAGGCCATCAAGCAACAGGATCTGGCACTGAAAGAGCAGCAGGAGACACAGTAGACATGCAATGGCAGCCCATGGAGTAGTAGGGTCAGTAGACACAAAATGGACAATAGTCAGAGTAGTTTTATTATCAAGCAACAGGAACTGAATGAGCCACAATGGAGGACAGTAGCTACACAAGTAGACACAAAATGGACTACAGACAGAAGTTAAGATGGATACAATGGAGGGCAGAGGTTCACACTAGTCACAACCTAATATTGCAATATAGCACTGTTGGCATCAATCTCATGGATTATTTTGATTGCTGTGAATGTATAATAGCCTTGTAATTATGGGAAGTCTTATTTCTGAGAGAAGTTGAATTGGAGTTTAGGTAAATAACATCTGTTGTGAACATGTTCTTCAAATAAAACTAAGATTT
>TU1633330
ATCGTAGAAGAAAAAGCTAGCTGACAATCCCGGAAAGGAACAAACATTGGTTTGTTTGGCTTGGCAACCCATCACCCTGAGCTGGGCCTAACAATACACAATGCCTGAAGTCAAATCGATGTTCAGAGAAGTGTTGCCCAAACAAGTTGTCCATGGAGGATGTCCCCACCATGGTGCTGTGTAAGCCCAAGCTGATGCCTCTGAAATCAGTCACCCTGGAGAAACTGGAGAAGATGCAACTGGAGGCCCAGGAGGCCATCAAGCAACAGGATCTGGCACTGAAAGAGCAGCAGGAGACACAGTAGACATGCAATGGCAGCCCATGGAGTAGTAGGGTCAGTAGACACAAAATGGACAATAGTCAGAGTAGTTTTATTATCAAGCAACAGGAACTGAATGAGCCACAATGGAGGACAGTAGCTACACAAGTAGACACAAAATGGACTACAGACAGAAGTTAAGATGGATACAATGGAGGGCAGAGGTTCACACTAGTCACAACCTAATATTGCAATATAGCACTGTTGGCATCAATCTCATGGATTATTTTGATTGCTGTGAATGTATAATAGCCTTGTAATTATGGGAAGTCTTATTTCTGAGAGAAGTTGAATTGGAGTTTAGGTAAATAACATCTGTTGTGAACATGTTCTTCAAATAAAACTAAGATTT

Function

NR:

description
BBSome-interacting protein 1-like

GO:

id name namespace
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0034464 BBSome cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949254.1 False 733 mRNA 0.43 3 20019616 20021101
TU1633329 False 677 TUCP 0.43 3 20019629 20021058
TU1633330 True 672 lncRNA 0.43 3 20019629 20021058

Neighbor

gene id symbol gene type direction distance location
LOC110487230 LOC106590349 coding downstream 438589 19540854 ~ 19581027 (-)
LOC110485541 xpnpep1 coding downstream 479928 19524837 ~ 19539688 (-)
LOC110485531 LOC106564462 coding downstream 518199 19500224 ~ 19501417 (-)
cxcl12b cxcl12b coding downstream 587408 19419049 ~ 19432304 (-)
LOC110485544 LOC106564456 coding downstream 668827 19343599 ~ 19350789 (-)
LOC110487268 NA coding upstream 59153 20080254 ~ 20110329 (-)
LOC110485337 LOC106590256 coding upstream 361117 20382218 ~ 20391692 (-)
keap1b LOC106564503 coding upstream 372012 20393113 ~ 20413872 (-)
LOC110493429 LOC106564504 coding upstream 402596 20423697 ~ 20429216 (-)
LOC118940353 LOC106590316 coding upstream 516312 20537413 ~ 20542283 (-)
G1426602 NA non-coding downstream 10467 19993943 ~ 20009149 (-)
G1426603 NA non-coding downstream 17486 19996141 ~ 20002130 (-)
G1426600 NA non-coding downstream 21368 19994086 ~ 19998248 (-)
G1426597 NA non-coding downstream 32843 19986515 ~ 19986773 (-)
G1426587 LOC106564477 non-coding downstream 33363 19984728 ~ 19986253 (-)
G1426607 NA non-coding upstream 1748 20022849 ~ 20023052 (-)
G1426616 NA non-coding upstream 25912 20047013 ~ 20047313 (-)
G1426622 NA non-coding upstream 38773 20059874 ~ 20060249 (-)
G1426624 NA non-coding upstream 39579 20060680 ~ 20060955 (-)
G1426625 NA non-coding upstream 39981 20061082 ~ 20061449 (-)
G1426547 NA other downstream 157953 19860301 ~ 19861663 (-)
G1426504 NA other downstream 216052 19799637 ~ 19803564 (-)
G1425986 NA other downstream 846939 19169380 ~ 19172677 (-)
LOC110485549 LOC106564452 other downstream 958223 19050725 ~ 19093965 (-)
G1425753 NA other downstream 1152684 18866190 ~ 18866932 (-)
G1426626 LOC106590134 other upstream 40579 20061680 ~ 20063618 (-)
G1427350 LOC106589837 other upstream 228694 20249795 ~ 20250083 (-)
G1427470 NA other upstream 532095 20553196 ~ 20556892 (-)
G1427608 NA other upstream 751425 20772526 ~ 20774375 (-)

Expression


Co-expression Network