LOC110511666 (LOC106589939)


Basic Information

Item Value
gene id LOC110511666
gene name LOC106589939
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 20785995 ~ 20787989 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592482.2
TTTTAtggtattatgtcatgttttgtgttgatcccaggaagagtagctgctgcttcagcaactgctaatggggatcctaataaaatcctAAATGCTAGGTGTGATATACTGACCATTATCATGGGAATTATGACACCTTCCAAGAGGTGAAGGCTGGGTTGGTTGGTTATTTCTTATAAAAGGCTGCCACCAACTCCAGTGTCTAGTAGCCCAGACTGACAGCAAGGTTTTCATTTGGAACCTTGAACCACTAAAATATAGACAACCAATTGATTATTGATTTATTTGCTGCGGAATAATTAGTGTTTTCTGAATCTGGAACAAAATATCAAAGATTTTCTATTTTTGTTGGGGAAAAATGACTTTCTTCATCAACTTTGTGTTTTTGTCCACATTTTCTGCCGTGGCTTTGTCTCTTCCATTCCCTCACAACTCCATCAAGAGCGTTCCTAAGAATGGCGCGAGCCGGGACTTTGAATCATCCGGTAACGGTCCAGTCGACGAACAGGAGCCTATTCGGGGAACGGTCAAAGTAGTCAAACTCAACCCCAATAACCTGGGTCTGTCGGGTCTTTTTAGACGAGGCGGGATTTTCCCCCGTGGTGCGCCCGGTCCGAGGATGCCTTTCCCAGCCTTCTTGTCCACGGGTCGCCCTGGCCCTCTTGCGCTCCCTGACAAAGCAGCTGCGGTGCCTCTGCATCCACTGTCACATCTGCACCACGACAGTCAGGGCAATGGCGGGGTGGGTATGAAGAAGAGGCAAGGATTTGAGATGTGGCAGAGGGCCATAGATAAGAGCGCCCACAGTAAGACCATGTCCATGTCGCTGCCCCTCAGTCTCAAAGACTCTGCCAACAGACAGAGCTGCGCCGCGGTGCCTTTTACTCAGCGGATAACGTCCGATGGCTGCAACGCGGTGACAGTCCACAACAAACTGTGCTTCGGTCAATGCAGTTCGCTGTTCATTCCCTCTGGTTGGGAGTCTGCCAGGCTGACGGGTGCAGGGGGACACCGCCGTGCGCCCTGTTCCCGCTGCGCTCCATCCAAGGCTCACACGGTGACGGTGCCTCTGCGCTGTGGGATGGAGGTGCGGGAGAAGCGCGTGATGGTGGTGGAAGAATGCAAATGTGAGACTGGTCGTGAGGAGGGGAATATCGAGGCTGTGGCCTCCATGCACTTGTAACTGAAGATACTGTAGTTTAAGGGCGACATTTTCCAGGTGCAAAAGCTCTGTGCGAATTAGAAAACGCACACTGCGAAATTATAATGAAGTTTATAGTATTTTTTGCACATTGCAACGCAACATTCTTGCACTACGAAAATATCGCC
>TU1634522
TGGCTTTGTCTCTTCCATTCCCTCACAACTCCATCAAGAGCGTTCCTAAGAATGGCGCGAGCCGGGACTTTGAATCATCCGGTAACGGTCCAGTCGACGAACAGGAGCCTATTCGGGGAACGGTCAAAGTAGTCAAACTCAACCCCAATAACCTGGGTCTGTCGGGTCTTTTTAGACGAGGCGGGATTTTCCCCCGTGGTGCGCCCGGTCCGAGGATGCCTTTCCCAGCCTTCTTGTCCACGGGTCGCCCTGGCCCTCTTGCGCTCCCTGACAAAGCAGCTGCGGTGCCTCTGCATCCACTGTCACATCTGCACCACGACAGTCAGGGCAATGGCGGGGTGGGTATGAAGAAGAGGCAAGGATTTGAGATGTGGCAGAGGGCCATAGATAAGAGCGCCCACAGTAAGACCATGTCCATGTCGCTGCCCCTCAGTCTCAAAGACTCTGCCAACAGACAGAGCTGCGCCGCGGTGCCTTTTACTCAGGTGAGGCAGACCTTTCAATTTTGGTTAACAATGACAAAGATGGTGTAGGACAGTAGGCCTAATGTTTAATCAAATTATTAGACTAAATTAGAAAGTTAAAAGGGATATTTTTTAATAAGTAGGGCCTAATGCTTGAAACATCAAAATACGAAATGTTTATGCGAGTCTAATTTTTTTAAATCGATCTTCCATGTACAGCGGATAACGTCCGATGGCTGCAACGCGGTGACAGTCCACAACAAACTGTGCTTCGGTCAATGCAGTTCGCTGTTCATTCCCTCTGGTTGGGAGTCTGCCAGGCTGACGGGTGCAGGGGGACACCGCCGTGCGCCCTGTTCCCGCTGCGCTCCATCCAAGGCTCACACGGTGACGGTGCCTCTGCGCTGTGGGATGGAGGTGCGGGAGAAGCGCGTGATGGTGGTGGAAGAATGCAAATGTGAGACTGGTCGTGAGGAGGGGAATATCGAGGCTGTGGCCTCCATGCACTTGTAACTGAAGATACTGTAGTTTAAGGGCGACATTTTCCAGGTGCAAAAGCTCTGTGCGAATTAGAAAACGCACACTGCGAAATTATAATGAAGTTTATAGTATTTTTTGCACATTGCAACGCAACATTCTTGCACTACGAAAATATCGCCCTAAATActtGTTTCCCCCCTCACAGCACCTGCTCTAGCCTATTTTGATGACTCTATTCATCGTTTTTGgacagaaaatatttatattgTGATGTCAGATGTGGACATTGATTATGTGTATTGTATGTGTGAGTCTGAATTTCTAATTCAGAGAAAAACGATTTGGAGGCAAGTGCCACCAATGATTGTTGACAAGTGACTAACATTTTTAGTCATGAACATTTCTGTTCAACCCTGTGGCAGAATGAGTCATCCACTCCACAGTGTAATCATGTTGAATAACTTGTTTAGTTTCATCTGAACTGAACTGCATTTTGTTTTTgtgaaataaaaatgtcaa

Function

NR:

description
DAN domain family member 5-like

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0007368 determination of left/right symmetry biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592482.2 False 1329 mRNA 0.50 2 20786463 20787989
TU1634522 True 1463 TUCP 0.47 2 20785995 20787585
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110485646 LOC106589946 coding downstream 54496 20512356 ~ 20731967 (-)
LOC110485645 LOC106590024 coding downstream 215389 20567409 ~ 20571074 (-)
LOC110485519 LOC106590222 coding downstream 236374 20547837 ~ 20550089 (-)
LOC118940353 LOC106590316 coding downstream 244180 20537413 ~ 20542283 (-)
LOC110493429 LOC106564504 coding downstream 357247 20423697 ~ 20429216 (-)
LOC110519576 LOC106589920 coding upstream 477 20788466 ~ 20795116 (-)
LOC110485651 LOC106589910 coding upstream 9356 20797345 ~ 20804443 (-)
LOC110485654 rab3d coding upstream 19108 20807097 ~ 20825381 (-)
LOC110487512 LOC106589682 coding upstream 38058 20826047 ~ 20832359 (-)
LOC118940354 LOC106589906 coding upstream 67899 20855888 ~ 20908598 (-)
G1427505 NA non-coding downstream 4639 20781519 ~ 20781824 (-)
G1427605 NA non-coding downstream 16418 20769280 ~ 20770045 (-)
G1427504 NA non-coding downstream 106510 20678823 ~ 20679953 (-)
G1427538 NA non-coding downstream 158880 20625634 ~ 20627583 (-)
G1427622 NA non-coding upstream 45716 20833705 ~ 20834221 (-)
G1427621 NA non-coding upstream 53080 20841069 ~ 20842443 (-)
G1427643 NA non-coding upstream 58843 20846832 ~ 20847397 (-)
G1427636 NA non-coding upstream 64856 20852845 ~ 20854524 (-)
G1427635 NA non-coding upstream 66712 20854701 ~ 20855766 (-)
G1427608 NA other downstream 12088 20772526 ~ 20774375 (-)
G1427470 NA other downstream 229571 20553196 ~ 20556892 (-)
G1427350 LOC106589837 other downstream 536380 20249795 ~ 20250083 (-)
G1426626 LOC106590134 other downstream 722845 20061680 ~ 20063618 (-)
G1427703 NA other upstream 219552 21007541 ~ 21032030 (-)
LOC110493443 NA other upstream 619093 21407072 ~ 21409247 (-)
G1428161 LOC106564449 other upstream 838688 21626677 ~ 21627280 (-)
G1428291 LOC106588995 other upstream 1016342 21804331 ~ 21804660 (-)
G1428740 NA other upstream 1551390 22339379 ~ 22340563 (-)
G1427537 NA non-coding downstream 164483 20620540 ~ 20621512 (-)

Expression

LOC110511666(LOC106589939) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.75.
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LOC110511666(LOC106589939) Expression in each Bioproject

Bar chart with 16 bars.
LOC110511666(LOC106589939) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network