LOC110487512 (LOC106589682)


Basic Information

Item Value
gene id LOC110487512
gene name LOC106589682
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 20826047 ~ 20832359 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948324.1
tgcgtcacagtcgatagcgcgccgaacctcgggctagaaggtcgagggttcgagacttgctccctgctgtttcattaaaTTCATTACAATAATAATACATGTTGAACCGTTTTAACAACTGTCTACTGATTGGTGGAAACGTTGCAAATATCCCGCGAGTTTTAAATTGATTGACAGCTCTAGAGCACTGGTCGACGTTCGTCTTCGAAGTCCACTCAATTAAAAGTCCATCGTGAAAACAGATGCACGACGGCggtgaaaaaagtcaagATGTCAGTGGTTCAGATGGTGAAGATCGTGGGTCTGGGGGCTGTGGCCCTCACTCTCAGTGtggagtggttgggctggctctTCTGTCGCCTCTGGCCCCGGAAAATATCCAGAGGGCCCCTGAAAGAAGTCTTCTTTTTCCCTACAGAGGTCGCCTGCACAGAGCGTCTCTTCACTCCTAACTCACCATTCCCCTGCCCCTGTCCTTTACCCCACAACATCAATACCTCCTTCACCCGTCTCCTGGTCCACATCctatctgcctcctcctccttggACCTGTGTGTGTTCGCCTTCACCAACCTGGACCTGAGCCGGGCCATACTGGCCCTCCACACCAGGGGCATCCCCATCCGTATCCTCACTGACATGGACTACACCCTCATCACCGGCTCCCAGATAGGGGCCATCCGCAGAGCAGGCATCTGTGTGAGGTGTGACTCCGGCGCCGTCCACATGCACCACAAGTTCGCCGTGGTGGACGGCCGGCGCCTAATCACCGGCTCCCTGAACTGGACACTGACAGCCATCCAGAGCAACAAGGAGAACATCCTGGTCACGGAGGAACCAGATCTAGTCCTGCCCTTCATCACTGAGTTCCAGAGGCTCTGGGATGTCAATGACCCGGCTAGGAGACACCTGCCGTCCATCACAGAGAAACCTGCTAGTTTAGtactatagagagacagagaaacatggCTGAAATGTTTGTATGGTGCTGGTGTATGGTGCCAGTAGCTGGTGGTTACTTTTGGTTTACCAACTGGTTTACCAACTGGTACGGTGATTATGTAGAATGTTTTATTATATTTTCCATTTGTGAGAAACCTGCTAGTTTAGTATTATGGATAGAAAGGTGTATGGTCCTTATCTGGGACAAACCTGTCCAAATAAAAACAGTATTTATATAAGTGTAGTGTGGTACATTAGGATTGGACAGTACTGGTCAAGTACATGATGTATAATTTGGGTAGTTTGCTATCTAGtagttttatatttttttcaatctCAGATAAACCTGCTCATCCACATCTTATCAGAGAAACCAGCTTTCTTCGTCATGTAGATAGACTTGAAAAACATGGCTTTCATCTGTAGTTTCCTACTTCAGTAGAAGTAATATATTTTTGACAGATCAATCGCTGCTTTAGACTGGTGTGGGGATGATGTAGAATGGGTAGTTTGATATTTTGAAAGTTTTTTATAGTTTTACATTGTTTACATTGAGGTATTTTGTTATTGTACACAATGTTGTATATATTTTAATACAAAGTAATttgaattgttttttttgttaaatgtTATATTGGATAACTAAAATATAGGAATTTGTTTTGTATGTTAAATGCTATATTTAAAATAAGATTTGATTACAGTATTTAGATAAAGATAGAAATAGTGAGAATACTTAATGTTAACTCAGTCCATCTTATGGTTTATCATTAAGAACCAGACCAGTATGCCTAGTCAGAACAATTGCACTGAGAGATAAGTGGTGCATTGCAGTCACGCAGAAGATATTTGTAATGCTTCTCAGAGCACACAGCTCAAATTAAAAATCCACTCTACT
>XM_036948325.1
tgcgtcacagtcgatagcgcgccgaacctcgggctagaaggtcgagggttcgagacttgctccctgctgtttcattaaaTTCATTACAATAATAATACATGTTGAACCGTTTTAACAACTGTCTACTGATTGGTGGAAACGTTGCAAATATCCCGCGAGTTTTAAATTGATTGACAGCTCTAGAGCACTGGTCGACGTTCGTCTTCGAAGTCCACTCAATTAAAAGTCCATCGTGAAAACAGATGCACGACGGCggtgaaaaaagtcaagACCTCAACTATCATTAGCTGTCAAGACTTCACCCTAGCTAGGCTAATCCTAACCAAGAGCTGAAAGGCAGGGGAAAAGATGTCAGTGGTTCAGATGGTGAAGATCGTGGGTCTGGGGGCTGTGGCCCTCACTCTCAGTGtggagtggttgggctggctctTCTGTCGCCTCTGGCCCCGGAAAATATCCAGAGGGCCCCTGAAAGAAGTCTTCTTTTTCCCTACAGAGGTCGCCTGCACAGAGCGTCTCTTCACTCCTAACTCACCATTCCCCTGCCCCTGTCCTTTACCCCACAACATCAATACCTCCTTCACCCGTCTCCTGGTCCACATCctatctgcctcctcctccttggACCTGTGTGTGTTCGCCTTCACCAACCTGGACCTGAGCCGGGCCATACTGGCCCTCCACACCAGGGGCATCCCCATCCGTATCCTCACTGACATGGACTACACCCTCATCACCGGCTCCCAGATAGGGGCCATCCGCAGAGCAGGCATCTGTGTGAGGTGTGACTCCGGCGCCGTCCACATGCACCACAAGTTCGCCGTGGTGGACGGCCGGCGCCTAATCACCGGCTCCCTGAACTGGACACTGACAGCCATCCAGAGCAACAAGGAGAACATCCTGGTCACGGAGGAACCAGATCTAGTCCTGCCCTTCATCACTGAGTTCCAGAGGCTCTGGGATGTCAATGACCCGGCTAGGAGACACCTGCCGTCCATCACAGAGAAACCTGCTAGTTTAGtactatagagagacagagaaacatggCTGAAATGTTTGTATGGTGCTGGTGTATGGTGCCAGTAGCTGGTGGTTACTTTTGGTTTACCAACTGGTTTACCAACTGGTACGGTGATTATGTAGAATGTTTTATTATATTTTCCATTTGTGAGAAACCTGCTAGTTTAGTATTATGGATAGAAAGGTGTATGGTCCTTATCTGGGACAAACCTGTCCAAATAAAAACAGTATTTATATAAGTGTAGTGTGGTACATTAGGATTGGACAGTACTGGTCAAGTACATGATGTATAATTTGGGTAGTTTGCTATCTAGtagttttatatttttttcaatctCAGATAAACCTGCTCATCCACATCTTATCAGAGAAACCAGCTTTCTTCGTCATGTAGATAGACTTGAAAAACATGGCTTTCATCTGTAGTTTCCTACTTCAGTAGAAGTAATATATTTTTGACAGATCAATCGCTGCTTTAGACTGGTGTGGGGATGATGTAGAATGGGTAGTTTGATATTTTGAAAGTTTTTTATAGTTTTACATTGTTTACATTGAGGTATTTTGTTATTGTACACAATGTTGTATATATTTTAATACAAAGTAATttgaattgttttttttgttaaatgtTATATTGGATAACTAAAATATAGGAATTTGTTTTGTATGTTAAATGCTATATTTAAAATAAGATTTGATTACAGTATTTAGATAAAGATAGAAATAGTGAGAATACTTAATGTTAACTCAGTCCATCTTATGGTTTATCATTAAGAACCAGACCAGTATGCCTAGTCAGAACAATTGCACTGAGAGATAAGTGGTGCATTGCAGTCACGCAGAAGATATTTGTAATGCTTCTCAGAGCACACAGCTCAAATTAAAAATCCACTCTACT

Function

NR:

description
mitochondrial cardiolipin hydrolase-like

GO: NA

KEGG:

id description
K16862 PLD6; mitochondrial cardiolipin hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948324.1 False 1840 mRNA 0.44 4 20826047 20832359
XM_036948325.1 True 1918 mRNA 0.44 5 20826047 20832359

Neighbor

gene id symbol gene type direction distance location
LOC110485654 rab3d coding downstream 666 20807097 ~ 20825381 (-)
LOC110485651 LOC106589910 coding downstream 21604 20797345 ~ 20804443 (-)
LOC110519576 LOC106589920 coding downstream 30931 20788466 ~ 20795116 (-)
LOC110511666 LOC106589939 coding downstream 38058 20785995 ~ 20787989 (-)
LOC110485646 LOC106589946 coding downstream 94080 20512356 ~ 20731967 (-)
LOC118940354 LOC106589906 coding upstream 23529 20855888 ~ 20908598 (-)
LOC110485669 LOC106589852 coding upstream 152960 20985319 ~ 20996681 (-)
LOC110487281 LOC106589534 coding upstream 270758 21103117 ~ 21122065 (-)
LOC110485685 LOC106564573 coding upstream 295822 21128181 ~ 21138353 (-)
LOC110485676 LOC106564572 coding upstream 306106 21138465 ~ 21162866 (-)
G1427505 NA non-coding downstream 44223 20781519 ~ 20781824 (-)
G1427605 NA non-coding downstream 56002 20769280 ~ 20770045 (-)
G1427504 NA non-coding downstream 146094 20678823 ~ 20679953 (-)
G1427538 NA non-coding downstream 198464 20625634 ~ 20627583 (-)
G1427537 NA non-coding downstream 204535 20620540 ~ 20621512 (-)
G1427622 NA non-coding upstream 1346 20833705 ~ 20834221 (-)
G1427621 NA non-coding upstream 8710 20841069 ~ 20842443 (-)
G1427643 NA non-coding upstream 14473 20846832 ~ 20847397 (-)
G1427636 NA non-coding upstream 20486 20852845 ~ 20854524 (-)
G1427635 NA non-coding upstream 22342 20854701 ~ 20855766 (-)
G1427608 NA other downstream 51672 20772526 ~ 20774375 (-)
G1427470 NA other downstream 269155 20553196 ~ 20556892 (-)
LOC118940353 LOC106590316 other downstream 284866 20537413 ~ 20542283 (-)
G1427350 LOC106589837 other downstream 575964 20249795 ~ 20250083 (-)
G1427703 NA other upstream 175182 21007541 ~ 21032030 (-)
LOC110493443 NA other upstream 574723 21407072 ~ 21409247 (-)
G1428161 LOC106564449 other upstream 794318 21626677 ~ 21627280 (-)
G1428291 LOC106588995 other upstream 971972 21804331 ~ 21804660 (-)
G1428740 NA other upstream 1507020 22339379 ~ 22340563 (-)

Expression

LOC110487512(LOC106589682) Expression in all Baseline Samples

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LOC110487512(LOC106589682) Expression in each Bioproject

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LOC110487512(LOC106589682) Expression in each Sample
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Co-expression Network