LOC110493449 (LOC106564566)


Basic Information

Item Value
gene id LOC110493449
gene name LOC106564566
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 21292152 ~ 21293951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567718.2
AAATTGCCCGTATCGCATGAACACTGGTAGAACACGAGTTTAACCAGCGAGAAAACAACTAACATTCCAGTTCGCAAAGAAATTTCAACGGGACGAAAGACTGTGTGGAATCCAATAATTAGTCACCGGACATCAGTTTGAATACTACTGTCAAGAAAAAAAACCCGACGACTATTGACTCGGTACAGTACAGTTCCACTATTTTGGAAGTTTTGCTCTGTTCTACATTGATAACTTTGGGCTTGATTATAATATACCTTCTGCGGAAACGTTTGGTTGCTGAAAAGACACTCGAGAGGGCTTGCCcttttttggacttataaattcaGCTACTACACTGAAGAATTCCAGCAATATTTGAATAATGTCCACAATAATGGAACAGCCTTTCTATCATGACGACTCGTTTCTTTCTGCTTATGGTCATTCAGGCGCTGCCCTGCACGACTACAAGCTCCTCAAGCAGAACATGAACTTGAACTTCGCCGAGAACTATCGGAACCAAAGCCTCAAGGCTCAGCTGCGCAACGAGAGTGAATTCTATCCGACCGGGGGCGCATCAGAAGTCGGCTCACTGAAGCTCGCCTCTCCTGAACTGGAGCGATTGATCATCCAGAACAGCAACGGTGTCATCACTACCACACCGACACCTGGGCAGTACTTCTACAGTAGGGGAATCACAGAGGAACAAGAGGGCTTCGCGGACGGGTTCGTTAAAGCTCTGGACGACCTCCACAAGATGAACCAGATGCCGCCACCGAACGTGTCCATCGGAACCGGTGGAGTCTCCACGTGCACTGTGGCCTCCACCGTGTTTGGTTCCTCCATGCAGCCGGAGCACCTAGAGTACACAACCCTGGACAGCTGTAGCCCTCACACTAATCTCACACCTGCAACCAGCAGCTACCCCTCCACCACCATCAGCTACCTGCCTCACCACCAGTACCAGCACCACCAAGCCGCGGCGCACCCATCCCACCACTTCCAGCACTCGCTAGCCGGAGCAGGCCTACACGCACAGCGATATTTGGGGCTGAAAGAGGAGCCCCAGACCGTTCCAGACATGCAGAGCAGCGACGACGAGTCAGTTTGCGGTATGTCCCCAATCGACATGGAGAACCAGGAGCGCATCAAGGCCGAGCGCAAGAGGCTCAGGAACCGCCTGGCAGCCACCAAGTGCCGGAAACGCAAACTGGAGCGCATCTCGCGCCTGGAGGACAAGGTGAAAATTCTGAAGACAGACAACGCCGGGCTCTCCAGCACAGCTTCCGTCCTGCGCGAGCAGGTAGCTCAACTCAAACAGAAAGTTATGACACACGTCAGTTCTGGCTGTCAACTCATGTTGACATCCAAGATCAAATCGTTTTGAAAACTATAAAACGATGGACTATACAATAAACACTGGACAATAATAGGGAATACATTTGTTTTTCTTTGTTAAAGCAATCAGAACGTACTGCACTGTTGGGATAGCAATTGAGTGAACTACCATGTGTTTTCATGTTGAAAATATTCAAAAGTTGGTtggtttttttgcattgtttattGGTTTCCAGGGTATGATGGACATGGGAAACCGCGTGCACAATAAGACTAATAACACTCGGGGCATTCTGAACAAGTTATATACAGTGTCCTCTAGTTATGGCTTTGCctgtttacatttgtttttattaaTTTGAACTGTCATTTGTGAAATGCATTCCATTTATAAGTTATTGTTTTAAGTCAGGTTGATCCTCACTGTCTTTTTTActtgtacagtatatatttaagTAAAATCTTAACTTTCCCTCGTC
>XM_021567720.2
TAAATTGCCCGTATCGCATGAACACTGGTAGAACACGAGTTTAACCAGCGAGAAAACAACTAACATTCCAGTTCGCAAAGAAATTTCAACGGGACGAAAGACTGTGTGGAATCCAATAATTAGTCACCGGACATCAGTTTGAATACTACTGTCAAGAAAAAAAACCCGACGACTATTGACTCGGCGCTGCCCTGCACGACTACAAGCTCCTCAAGCAGAACATGAACTTGAACTTCGCCGAGAACTATCGGAACCAAAGCCTCAAGGCTCAGCTGCGCAACGAGAGTGAATTCTATCCGACCGGGGGCGCATCAGAAGTCGGCTCACTGAAGCTCGCCTCTCCTGAACTGGAGCGATTGATCATCCAGAACAGCAACGGTGTCATCACTACCACACCGACACCTGGGCAGTACTTCTACAGTAGGGGAATCACAGAGGAACAAGAGGGCTTCGCGGACGGGTTCGTTAAAGCTCTGGACGACCTCCACAAGATGAACCAGATGCCGCCACCGAACGTGTCCATCGGAACCGGTGGAGTCTCCACGTGCACTGTGGCCTCCACCGTGTTTGGTTCCTCCATGCAGCCGGAGCACCTAGAGTACACAACCCTGGACAGCTGTAGCCCTCACACTAATCTCACACCTGCAACCAGCAGCTACCCCTCCACCACCATCAGCTACCTGCCTCACCACCAGTACCAGCACCACCAAGCCGCGGCGCACCCATCCCACCACTTCCAGCACTCGCTAGCCGGAGCAGGCCTACACGCACAGCGATATTTGGGGCTGAAAGAGGAGCCCCAGACCGTTCCAGACATGCAGAGCAGCGACGACGAGTCAGTTTGCGGTATGTCCCCAATCGACATGGAGAACCAGGAGCGCATCAAGGCCGAGCGCAAGAGGCTCAGGAACCGCCTGGCAGCCACCAAGTGCCGGAAACGCAAACTGGAGCGCATCTCGCGCCTGGAGGACAAGGTGAAAATTCTGAAGACAGACAACGCCGGGCTCTCCAGCACAGCTTCCGTCCTGCGCGAGCAGGTAGCTCAACTCAAACAGAAAGTTATGACACACGTCAGTTCTGGCTGTCAACTCATGTTGACATCCAAGATCAAATCGTTTTGAAAACTATAAAACGATGGACTATACAATAAACACTGGACAATAATAGGGAATACATTTGTTTTTCTTTGTTAAAGCAATCAGAACGTACTGCACTGTTGGGATAGCAATTGAGTGAACTACCATGTGTTTTCATGTTGAAAATATTCAAAAGTTGGTtggtttttttgcattgtttattGGTTTCCAGGGTATGATGGACATGGGAAACCGCGTGCACAATAAGACTAATAACACTCGGGGCATTCTGAACAAGTTATATACAGTGTCCTCTAGTTATGGCTTTGCctgtttacatttgtttttattaaTTTGAACTGTCATTTGTGAAATGCATTCCATTTATAAGTTATTGTTTTAAGTCAGGTTGATCCTCACTGTCTTTTTTActtgtacagtatatatttaagTAAAATCTTAACTTTCCCTCGTC

Function

NR:

description
PREDICTED: transcription factor jun-B-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060047 heart contraction biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567718.2 False 1799 mRNA 0.47 1 21292152 21293950
XM_021567720.2 True 1551 mRNA 0.49 2 21292152 21293951

Neighbor

gene id symbol gene type direction distance location
LOC110493451 LOC106564568 coding downstream 5444 21274885 ~ 21286708 (-)
LOC118940357 LOC106589359 coding downstream 71367 21214710 ~ 21220785 (-)
LOC110485675 LOC106564530 coding downstream 80488 21195654 ~ 21211664 (-)
LOC110487282 LOC106589400 coding downstream 97543 21187120 ~ 21194609 (-)
LOC118940356 NA coding downstream 113786 21174172 ~ 21178366 (-)
LOC110495100 LOC106589459 coding upstream 41310 21335261 ~ 21352671 (-)
LOC110493447 LOC106564561 coding upstream 59243 21353194 ~ 21360283 (-)
ntan1 ntan1 coding upstream 70199 21364150 ~ 21367378 (-)
LOC110493446 LOC106589449 coding upstream 83835 21377786 ~ 21385648 (-)
LOC110493443 NA coding upstream 113121 21407072 ~ 21409247 (-)
G1427811 NA non-coding downstream 29199 21262666 ~ 21262953 (-)
G1427797 NA non-coding downstream 43047 21248843 ~ 21249105 (-)
G1427796 NA non-coding downstream 43928 21248024 ~ 21248224 (-)
G1427795 NA non-coding downstream 51392 21240355 ~ 21240760 (-)
G1427794 NA non-coding downstream 55890 21235949 ~ 21236262 (-)
G1427854 NA non-coding upstream 30576 21324527 ~ 21324809 (-)
G1427858 NA non-coding upstream 33549 21327500 ~ 21332468 (-)
G1427860 NA non-coding upstream 55769 21349720 ~ 21349992 (-)
G1427809 NA non-coding upstream 66601 21360552 ~ 21361055 (-)
G1427872 LOC106589436 non-coding upstream 104536 21398487 ~ 21399227 (-)
G1427703 NA other downstream 280832 21007541 ~ 21032030 (-)
LOC110511666 LOC106589939 other downstream 504567 20785995 ~ 20787989 (-)
G1427608 NA other downstream 517777 20772526 ~ 20774375 (-)
G1427470 NA other downstream 735260 20553196 ~ 20556892 (-)
LOC118940353 LOC106590316 other downstream 750971 20537413 ~ 20542283 (-)
G1428161 LOC106564449 other upstream 332726 21626677 ~ 21627280 (-)
G1428291 LOC106588995 other upstream 510380 21804331 ~ 21804660 (-)
G1428740 NA other upstream 1045428 22339379 ~ 22340563 (-)
G1429642 NA other upstream 1960371 23254322 ~ 23254592 (-)

Expression

LOC110493449(LOC106564566) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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LOC110493449(LOC106564566) Expression in each Bioproject

Bar chart with 21 bars.
LOC110493449(LOC106564566) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6000.
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Co-expression Network