LOC110493446 (LOC106589449)


Basic Information

Item Value
gene id LOC110493446
gene name LOC106589449
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 21377786 ~ 21385648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567715.2
CCGAAAATGGCGGCGCCGCCAGAGGAGGAGAGCTTGGAGTCTCGCGTCAGTGAGTCATACGATGCTTTTACTGCTATAACGACTCAATACGTGACCAATTTACTTTCAGAAAACTGAGACAAAGCCACCAACCCTCTGAACAAGGAGGCGGACTGGGACAGTATCCAGGGCTTCTGTGAACAGCTCAACAATGAGCCTGAAGGtCCTCAACTGGCTACCAGACTTTTGGCCCATAAGATCCAGTCACCCCAAGAATGGGAGGCCATGCAAGCACTAATGGTTCTAGAGATGTGCATGAAGAACTGTGGGAAGAGGTTCCACAATGAAGTGGGCAAATTCCGCTTCCTCAACGAGCTCATCAAGGTGGTCTCACCCAAGTACCTGGGTACTCGGGCCCCAGAGCCAGTGAAGAAGAAGGTTCTGGAGGTGATGTTCAGTTGGACGGTGGGTCTGCCTGACGAGCCCAAGATAGCAGACGCCTACCAGATGCTGAAGAAACAAGGCATTGTGAAGCAGGACCCGGTACTTCCTGATGAGCCCCTCCCACCCCCTCCGCCCAGAACTAAGAGCGTCATCTTTGAGGATGAGGAGAAGTCCAAGATGCTGTCTCGGCTTTTGAATAGCACTCACCCTGAAGATCTAAGAGCAGCAAACAAACTCATTAAGGAAATGGTGCAGGAGGACCAGAAGCGAATGGAGAAGGTGTCTAAGCGTGTGAACGCCATCCAGGAGGTGAAGGAGAGTGTGGGCCTGCTGACCCAGCTACTGGGAGACTATAGCAAGGAGAGCAGCTCCCAGAGCAATCAGGAACTCATCAAGgACCTATACCAGAGCTGTGAAAAGATGAGGCCTACTTTGTTCCGATTGGCTAGCGACACAGAGGACAATGATGAGGCCTTGGCTGACATCCTGCAGGCCAACGACAGCCTGACTCAGGTCATCAACCTGTACAGACAGCTGGTGAAGGGAGAAGAGGTGAACGGAGACAGCACAGCCATGCCTACACtaccagGAAGTAGCACAGCCCTCCTAGACCTGACAGGGTTAGACACATCGCCCACTGGACTTCCCTCCTACCCAGACACCCCCTCACTACAGACCACGTCACAAGAACTGGGTATCAGCCTGCTAGATGATGAGCTCATGTCACTAGGACTCAATGACGTAACGCCCAACTCTACCCACACCCCTCAGTCGGGAGACTGGAACTACTTTCAGTGTTTTGACAGTGTAGAGCCAGTCGTCCCAGCGGTGCCTACTGCAACAGTGTTGCTACCGGCCGTGACCCCTATCCCCCAGGCTCCATCAGGGGGGGCCCCCGCTGCTTCCCCTAAAGCCCTGGATGAGTTAGACCTGCTGGGCAAGACCCTGCTGCATCAGTCCCTACCCCCGGGGACGCAGCACGTCAATTGggATAAACTGCAGTCCAGACCCACCCTGCGAGACCTCCAGACCAAGTCCAGTACCAACACTACTAGCACCTCCACCCCCAGCCCTGTCCTGGCCTTCCCCTCTGAGCAGCCTGGGTCTCTTCTAGACTCCCTGCCCAGCCCCGGGCCTCCTACCCCAGTCCCCCAGAACGACATCTCCTTAGCTAACGTGACTGTGCCCTTGGAATCAATCAAGCCCAgCAGCTTGTTACCAGTGACTGTATTTGACAAGCACAGTTTGCGGGTGCTGTTCCACTTTGCCCgtgactctcctccctctcggCCTGACGTGCTGGTAGTGATAATTTCCATGTTGTCCTCGGCCCCCATACCAGTCACCAACATCCGCTTCCAGTCTGCAGTACCCAAGGTGATGAAGGTGAAACTACAGCCTCCTTCAGGAACTGAGCTTCCAGCCTTCAACCCCATCTTACCCCCAGCCGCCATCACACAGGTCCTACTGCTGGCCAATCCTCACaagGAGATGGTCCGGTTGCGATACAAGCTCACATTTGACCTGGGAGAAGAATCACATGATGAATCCGGCGATGTAGAACAGTTCCCCCCTCCAGATACCTGGGGGAACCTTTAGTGGGACTGATCAACTTCCTGTCACCTGATCCGCTGCTTCCCTTAGGTGTAGGTCGAAGGTCCCCCCCAAGCACTGGTCCAGGGAAAGATGGCGTTTTTACATTGTGATGGTTACGGGAAATATGGTCTTAGACCTGTTATTTGGGATCAGTTTCTCCCTTAAGGGTCACACCAAATGTGTGCTGTTGACATCTGACTACCGACTTTTTCGCGTAATTCTACATGTAAAATCGGTTTGCACTCAGTTTTCAAATTACCTCCGGTtctctgttcagaggtgctaagtacacTCGGCAGGTAAACGCTATTGGTGTGTCCGAGCCCTTATGTCTTCCCATTTGTTATGGATTGAATATCGGCAGGGAAAGTGGATCCTAGATAAGTTATTTGTGGGCAGTTTCTCCCTTATGCCATCCATGTGTCCCATCCATGATCCACCACCCCATGTTGTCATCTTTCATACTCccattttgtgtttttcttcattcCATTGACTGTACTACAATCAGCCCTTAGTCTCCAATGCATTACTGTATAATAACCATCTCACGTGATCTGTCCAAAACAAACCATTGCTGTGAGAAGTCGAAGCCTTTTAAACTGAATGTGTGTGGAACGGTTTCTCTCAGGCTATGCCTGATAGCATTATTCTGCACAAAATATGACACTCAAATAGTGTAGTCCCAAAGTATTGTATTATTTTCTATTATTTGTACGGTGTAAGACCAGTTGGGTCTGTGACTGTTATATAAGTTGGGCAGTAGGTGTCTGAAGCTGTAACAAATGTATGTCCTGTCCAATCTTCTGTGAAGGAATATCCAATCTATGACGCTTTTATCCATTCTATTGAAATCACATGATCATATTGTTTTGATCTAAACAGCAGTTTGTTGCCCCCCCCCGATTTAAGTGATTTCATTCCACTACATGATGCATGCACTTCCTGTTAGTTTGGTTATGGACATGAATATGATTCCCTCATTTGCTGTTGACGTTGACCCAAAGGGAGAGGCGTTAGTTCAGTACTGAGTTGTCAGTGCTGACACCGTTTAAATCTGCCGTATGTGCCTAAAGCTGAAAGTTTGTTCTTTATGTATCttggtatttattttttaccttccATGTACATACCAATACTAATTTGGTTGTCAATTTTGTTTCTGAGTTGGACTACTGATTTTCTTATGAAATTTGGTTATGCTTCCTTTGGTGTGAGATGTGAAACGAATATGGTCATTAATGATGCGTTCGTTCAATCTAGGGGCGACCAATCATATCCGCTCCAGTCAAGTAGTACCACACCCGATTCAACCAATAAAATTATTTATAGAAGACTAAGATCAGGTACCATGTTAGTGCTTGGCTAGAAGTAAAGCCAGCAGCCCCACCTGTCTATTGCAGATACAGTGGCTGCATCTCTCACATCATTCTGCAGCTCCCCTCCACATTCCACCTCCCTGCCTTTATTCCCTAGCCtgtgtcccagatctgtttgtgctgtcttgtgaACTCAATGACTGTAGGAGCTGGTAAAACagcccaaacagatctgggactcagGCTACCTATTCCCTGCTCTGACTTTGTAAATAATAATGGTTTTGCAATTATGTACATTTGCCAAAAAAAGTATAATTATAGAGAGCAAATAAATATTGACGGGGGAATGGTGAATGTAGTGCAAATATGTATTTAAGGGAAATAAAGTTATTCTTTTTCTCGGGGGTTTAAA
>XM_021567714.2
ACAACCGTGTAGTAGAGGGACGACCAAGAATGGCTTGATATGATGACGCCCACGTCGTTGCATGAGACTGGCAAAGTAACGCGATAGCTGCCAGTTAATCGGAATCCCCGAAAATGGCGGCGCCGCCAGAGGAGGAGAGCTTGGAGTCTCGCGTCAACAAAGCCACCAACCCTCTGAACAAGGAGGCGGACTGGGACAGTATCCAGGGCTTCTGTGAACAGCTCAACAATGAGCCTGAAGGtCCTCAACTGGCTACCAGACTTTTGGCCCATAAGATCCAGTCACCCCAAGAATGGGAGGCCATGCAAGCACTAATGGTTCTAGAGATGTGCATGAAGAACTGTGGGAAGAGGTTCCACAATGAAGTGGGCAAATTCCGCTTCCTCAACGAGCTCATCAAGGTGGTCTCACCCAAGTACCTGGGTACTCGGGCCCCAGAGCCAGTGAAGAAGAAGGTTCTGGAGGTGATGTTCAGTTGGACGGTGGGTCTGCCTGACGAGCCCAAGATAGCAGACGCCTACCAGATGCTGAAGAAACAAGGCATTGTGAAGCAGGACCCGGTACTTCCTGATGAGCCCCTCCCACCCCCTCCGCCCAGAACTAAGAGCGTCATCTTTGAGGATGAGGAGAAGTCCAAGATGCTGTCTCGGCTTTTGAATAGCACTCACCCTGAAGATCTAAGAGCAGCAAACAAACTCATTAAGGAAATGGTGCAGGAGGACCAGAAGCGAATGGAGAAGGTGTCTAAGCGTGTGAACGCCATCCAGGAGGTGAAGGAGAGTGTGGGCCTGCTGACCCAGCTACTGGGAGACTATAGCAAGGAGAGCAGCTCCCAGAGCAATCAGGAACTCATCAAGgACCTATACCAGAGCTGTGAAAAGATGAGGCCTACTTTGTTCCGATTGGCTAGCGACACAGAGGACAATGATGAGGCCTTGGCTGACATCCTGCAGGCCAACGACAGCCTGACTCAGGTCATCAACCTGTACAGACAGCTGGTGAAGGGAGAAGAGGTGAACGGAGACAGCACAGCCATGCCTACACtaccagGAAGTAGCACAGCCCTCCTAGACCTGACAGGGTTAGACACATCGCCCACTGGACTTCCCTCCTACCCAGACACCCCCTCACTACAGACCACGTCACAAGAACTGGGTATCAGCCTGCTAGATGATGAGCTCATGTCACTAGGACTCAATGACGTAACGCCCAACTCTACCCACACCCCTCAGTCGGGAGACTGGAACTACTTTCAGTGTTTTGACAGTGTAGAGCCAGTCGTCCCAGCGGTGCCTACTGCAACAGTGTTGCTACCGGCCGTGACCCCTATCCCCCAGGCTCCATCAGGGGGGGCCCCCGCTGCTTCCCCTAAAGCCCTGGATGAGTTAGACCTGCTGGGCAAGACCCTGCTGCATCAGTCCCTACCCCCGGGGACGCAGCACGTCAATTGggATAAACTGCAGTCCAGACCCACCCTGCGAGACCTCCAGACCAAGTCCAGTACCAACACTACTAGCACCTCCACCCCCAGCCCTGTCCTGGCCTTCCCCTCTGAGCAGCCTGGGTCTCTTCTAGACTCCCTGCCCAGCCCCGGGCCTCCTACCCCAGTCCCCCAGAACGACATCTCCTTAGCTAACGTGACTGTGCCCTTGGAATCAATCAAGCCCAgCAGCTTGTTACCAGTGACTGTATTTGACAAGCACAGTTTGCGGGTGCTGTTCCACTTTGCCCgtgactctcctccctctcggCCTGACGTGCTGGTAGTGATAATTTCCATGTTGTCCTCGGCCCCCATACCAGTCACCAACATCCGCTTCCAGTCTGCAGTACCCAAGGTGATGAAGGTGAAACTACAGCCTCCTTCAGGAACTGAGCTTCCAGCCTTCAACCCCATCTTACCCCCAGCCGCCATCACACAGGTCCTACTGCTGGCCAATCCTCACaagGAGATGGTCCGGTTGCGATACAAGCTCACATTTGACCTGGGAGAAGAATCACATGATGAATCCGGCGATGTAGAACAGTTCCCCCCTCCAGATACCTGGGGGAACCTTTAGTGGGACTGATCAACTTCCTGTCACCTGATCCGCTGCTTCCCTTAGGTGTAGGTCGAAGGTCCCCCCCAAGCACTGGTCCAGGGAAAGATGGCGTTTTTACATTGTGATGGTTACGGGAAATATGGTCTTAGACCTGTTATTTGGGATCAGTTTCTCCCTTAAGGGTCACACCAAATGTGTGCTGTTGACATCTGACTACCGACTTTTTCGCGTAATTCTACATGTAAAATCGGTTTGCACTCAGTTTTCAAATTACCTCCGGTtctctgttcagaggtgctaagtacacTCGGCAGGTAAACGCTATTGGTGTGTCCGAGCCCTTATGTCTTCCCATTTGTTATGGATTGAATATCGGCAGGGAAAGTGGATCCTAGATAAGTTATTTGTGGGCAGTTTCTCCCTTATGCCATCCATGTGTCCCATCCATGATCCACCACCCCATGTTGTCATCTTTCATACTCccattttgtgtttttcttcattcCATTGACTGTACTACAATCAGCCCTTAGTCTCCAATGCATTACTGTATAATAACCATCTCACGTGATCTGTCCAAAACAAACCATTGCTGTGAGAAGTCGAAGCCTTTTAAACTGAATGTGTGTGGAACGGTTTCTCTCAGGCTATGCCTGATAGCATTATTCTGCACAAAATATGACACTCAAATAGTGTAGTCCCAAAGTATTGTATTATTTTCTATTATTTGTACGGTGTAAGACCAGTTGGGTCTGTGACTGTTATATAAGTTGGGCAGTAGGTGTCTGAAGCTGTAACAAATGTATGTCCTGTCCAATCTTCTGTGAAGGAATATCCAATCTATGACGCTTTTATCCATTCTATTGAAATCACATGATCATATTGTTTTGATCTAAACAGCAGTTTGTTGCCCCCCCCCGATTTAAGTGATTTCATTCCACTACATGATGCATGCACTTCCTGTTAGTTTGGTTATGGACATGAATATGATTCCCTCATTTGCTGTTGACGTTGACCCAAAGGGAGAGGCGTTAGTTCAGTACTGAGTTGTCAGTGCTGACACCGTTTAAATCTGCCGTATGTGCCTAAAGCTGAAAGTTTGTTCTTTATGTATCttggtatttattttttaccttccATGTACATACCAATACTAATTTGGTTGTCAATTTTGTTTCTGAGTTGGACTACTGATTTTCTTATGAAATTTGGTTATGCTTCCTTTGGTGTGAGATGTGAAACGAATATGGTCATTAATGATGCGTTCGTTCAATCTAGGGGCGACCAATCATATCCGCTCCAGTCAAGTAGTACCACACCCGATTCAACCAATAAAATTATTTATAGAAGACTAAGATCAGGTACCATGTTAGTGCTTGGCTAGAAGTAAAGCCAGCAGCCCCACCTGTCTATTGCAGATACAGTGGCTGCATCTCTCACATCATTCTGCAGCTCCCCTCCACATTCCACCTCCCTGCCTTTATTCCCTAGCCtgtgtcccagatctgtttgtgctgtcttgtgaACTCAATGACTGTAGGAGCTGGTAAAACagcccaaacagatctgggactcagGCTACCTATTCCCTGCTCTGACTTTGTAAATAATAATGGTTTTGCAATTATGTACATTTGCCAAAAAAAGTATAATTATAGAGAGCAAATAAATATTGACGGGGGAATGGTGAATGTAGTGCAAATATGTATTTAAGGGAAATAAAGTTATTCTTTTTCTCGGGGGTTTAAA

Function

NR:

description
ADP-ribosylation factor-binding protein GGA1-like isoform X1

GO: NA

KEGG:

id description
K12404 GGA; ADP-ribosylation factor-binding protein GGA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567715.2 False 3753 mRNA 0.48 17 21377786 21385541
XM_021567714.2 True 3791 mRNA 0.49 17 21377786 21385648
Loading

Neighbor

gene id symbol gene type direction distance location
ntan1 ntan1 coding downstream 10408 21364150 ~ 21367378 (-)
LOC110493447 LOC106564561 coding downstream 17503 21353194 ~ 21360283 (-)
LOC110495100 LOC106589459 coding downstream 25115 21335261 ~ 21352671 (-)
LOC110493449 LOC106564566 coding downstream 83835 21292152 ~ 21293951 (-)
LOC110493451 LOC106564568 coding downstream 91078 21274885 ~ 21286708 (-)
LOC110493443 NA coding upstream 21424 21407072 ~ 21409247 (-)
LOC110493441 sox10 coding upstream 25978 21411626 ~ 21417430 (-)
LOC110493440 LOC106564549 coding upstream 43700 21429348 ~ 21439487 (-)
LOC110493454 NA coding upstream 77352 21463000 ~ 21465098 (-)
mb mb coding upstream 105586 21491234 ~ 21494421 (-)
G1427809 NA non-coding downstream 16731 21360552 ~ 21361055 (-)
G1427860 NA non-coding downstream 27794 21349720 ~ 21349992 (-)
G1427858 NA non-coding downstream 45318 21327500 ~ 21332468 (-)
G1427854 NA non-coding downstream 52977 21324527 ~ 21324809 (-)
G1427811 NA non-coding downstream 114833 21262666 ~ 21262953 (-)
G1427872 LOC106589436 non-coding upstream 12839 21398487 ~ 21399227 (-)
G1427871 NA non-coding upstream 14039 21399687 ~ 21400050 (-)
G1427879 NA non-coding upstream 37017 21422665 ~ 21423590 (-)
G1427880 NA non-coding upstream 37964 21423612 ~ 21424091 (-)
G1427883 NA non-coding upstream 42723 21428371 ~ 21429168 (-)
G1427703 NA other downstream 366466 21007541 ~ 21032030 (-)
LOC110511666 LOC106589939 other downstream 590201 20785995 ~ 20787989 (-)
G1427608 NA other downstream 603411 20772526 ~ 20774375 (-)
G1427470 NA other downstream 820894 20553196 ~ 20556892 (-)
LOC118940353 LOC106590316 other downstream 836605 20537413 ~ 20542283 (-)
G1428161 LOC106564449 other upstream 241029 21626677 ~ 21627280 (-)
G1428291 LOC106588995 other upstream 418683 21804331 ~ 21804660 (-)
G1428740 NA other upstream 953731 22339379 ~ 22340563 (-)
G1429642 NA other upstream 1868674 23254322 ~ 23254592 (-)

Expression

LOC110493446(LOC106589449) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110493446(LOC106589449) Expression in each Bioproject

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LOC110493446(LOC106589449) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network